XLOC_015887



Basic Information


Item Value
gene id XLOC_015887
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 47973613 ~ 47976706 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00033680
CGCTCATCAGTTGTTCGATTCGTCTACGAGTCACTCTTTTGAATCGGTTCTTCTTATTGATTCGAATGAAAGGCACAAGGCAGCTCTAGCGACATAGTGAATCTTTTGGCGCGGTTTTGAAAGTTGTTAGacagaaaatgaacattttaggaCACATCCAACGAAAATAGTGATGAATGATGTCAATAGTTATCTATAGTcaaatgaaatgtgtttttttgccGTTGAAGGGATGAAAAGAAAGTGAACACCTgcgttttcggcgtctgaacaacGACGAACGTTATGCTAAAGCTAACGTTAGTGAATGGTTACTAAAATAAATTCAGaaattgatTGAATGAGGCTCTCAGGAGGTGTACTCTGGCGGATTGGTC

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00033680 True 377 lncRNA 0.40 3 47973613 47976706

Neighbor


gene id symbol gene type direction distance location
XLOC_015886 ftr19 coding upstream 22046 47944967 ~ 47951567 (+)
XLOC_015885 ftr26 coding upstream 30121 47935476 ~ 47943492 (+)
XLOC_015884 ftr25 coding upstream 44330 47927026 ~ 47929283 (+)
XLOC_015882 NA coding upstream 56641 47841571 ~ 47916972 (+)
XLOC_015883 ftr23 coding upstream 61866 47905735 ~ 47911747 (+)
XLOC_015888 NA coding downstream 4161 47980867 ~ 47998420 (+)
XLOC_015889 klf6b coding downstream 97266 48073972 ~ 48082182 (+)
XLOC_015890 pitrm1 coding downstream 112351 48089057 ~ 48119409 (+)
XLOC_015891 NA coding downstream 286324 48263030 ~ 48264841 (+)
XLOC_015892 NA coding downstream 298892 48275598 ~ 48276079 (+)
XLOC_015877 NA non-coding upstream 649234 47308209 ~ 47324379 (+)
XLOC_015876 NA non-coding upstream 675515 47295989 ~ 47298098 (+)
XLOC_015874 BX248512.2 non-coding upstream 824044 47148933 ~ 47149569 (+)
XLOC_015873 BX248512.1 non-coding upstream 859959 47112696 ~ 47113654 (+)
XLOC_015895 NA non-coding downstream 320346 48297052 ~ 48297450 (+)
XLOC_015896 NA non-coding downstream 404204 48380910 ~ 48387392 (+)

Expression



Co-expression Network