XLOC_015888


Basic Information

Item Value
gene id XLOC_015888
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 47980867 ~ 47998420 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033681
TTTCTCAAGGCGCTCCCGTTCCTCCAAGACCTTTATAGTGAGCTTCAGATCTTTACTTTCAATGGTCCCCAGTGCCTTTAAAAAAGCCCTCATCTGTTTAAAGGTTTTATCCCAGACAAGCTTGATCagtttgtcatcatcatcatcatcgtcatctgAATCATTGTCAGAGGTTGTAGGCGCTTCTACTTTTTTGTCTGCATACATAGCTGAGTTGTTGAAGCTGAAATGCGTTGGTTGTCCCTTTTTATTCTTTTGACTGGGCAGATCTGCTGCTTTGATGGCTTCTAGAACTGGGATCTCTTTACCATCAGCAAATGTCACCATAACTATAATGTTCTCTGCAATGTCTTTTCCAAAAGTGGATAAGATTGAGTCAAAGATATACTTCTGGTTGGCACTCAATCGGGCAAGAGAGGCCTGGACAACAAAGCAGACGGCATCAATGTGATCGATTCCCAAAGGGCTGCAAAGAAAGCTTTTGAGCTGCTCTGTTATCAGTTTGTCATGTGCAATTCCTCTTGTGTCCCCAAATCCTGGAGTATCCACGATTGTGAGGGAGTAGGGAATTTGAAAGCCAGGCTGATTGTACAGCTCGTAAGATGAAACGATATATGTCTGACTCTCTGCTTGTGAGCGATTCGTCACTTCATTGATCAGTTTAAAGCGATAGCTATCCTCCCACTCTACTCCCAGTATGTAATTGACCAACACATTGACCAGCGTGGTTTTTCCTGCTCCTGTTGATCCTAGAAGAAGAATGACTTTGTTTTTCACATCCTCTACTTTTCTTCCAAATACATACTGATTAAAATGTTCATTCTCTTCAATTTTTTTATGTAGCTCAAGTATGTGAATTGAAGGATTCCCCTTATGTATACGTGAAGATTGATTTAAGAATATCCCACTTCCAACCTTGACTGGCTGTTTGCTTTTCAGGTTTACAGAAAACCTTGAGTCAGAGCTGTAAAGACTCTCTCCATAATTTCCACATTTAGCAGAAACTCTGACTGTGTAATCTGTGTTTTCTTTCAGTCCCTGAAGAGTGCACTCTCTGCTTGTACATTTCACAGCGTTCCATCGCTTTTCGTTTTCCAGATCTTTTGTATATTCTCTGAACTCCAGCACATAACCAGTGAGCAGAACATCTTCACCCACAGATGTAGGAACATCCCAAGCTACAGTTACTGACTCAGATTCAGCTCTTTTCACCATAGGCGCTCCTGGAGGAGCACATGGACGAGTCTTAAAGAAAGATGTTGAGTCACTTGCTAGACTCACTCCTGGACGACACACAGCCTTACAGGTGAAACGATATTCTTTATTCGGCTGTAAGTGCTTCACAGTGACCTGATCTGAAACCCCTTCAGTTAACACCTCTGTCCATTCAGAGCTCTGTGCAGACTGATATGAGATACAGTAGGAGGTCACAAACCTTACACCACGCTCAGGAGAACTGATTTGCAGATGAATGCAGTCATGTTCAGCACTCAACACAACCGGTGTTGGTGGTTTTGAGGGAAGCTCAAACTGAGAGTTTAAGAGTCTGCCTCTTTCATACACATGAATTGAAGAAGCAGAGCTGAGTTCATCTGGGATTGATGCAATGCAGAATTCAATATTCTCTCTTCCTCTATTGGCTTCTTTAAAATCTAGGAAGGCCTGTATGGTTTCCCTGGTAAGTGCAGTTACATTTCCTGAGGAAAACCATTTCTCTGTCTTCTTTGAAGAGTTTTGATCATAACTTTCTTGCTCTCCATTGTTGCGTGCTTGATTTTTCAGGTAAGTCTCCAAGTCTGAAATGTACAGTTCATTTTCATCTAAGGAAGAGAGTGCAAAGGCTATGACATAGTGACTGGATGGCTTCAAGACAACCTTGTCCAAGTCGTTGCTGGATGAACAAACAGGAACATCTTTCATGATGTCCAGGTAAGATCTGACAACATTCATCTCTCGCTCTCGCTCTTGTAGATACTTGTTTACCAGAGCACCCTGAAATGGGGATCTTTCTTTGTCATTCAGAACATTAACAAGCTCTTGTTCTTCTGTTCCTCCACCCCTGATAGATGGAAGAAGACTGCAGAGATGTTTTTGAAAAATAGTTTTATACTCTGAGCAGAGGTCTTTAAATTTTCTTAATTTGGTTTTGATTTCGGGGAACTGAGTGGCGATATTGTCCCTCATCAGGTCTTGGCAGTGAATGTCACAGTTATCCAGTGCTTCCATGATCCGTTGTGCACTTCGCACTAGACTGACACTGATCTCCCTGACTAACTGTGCAGCTTGTGAATCTAGTTTTTTCAGAGGGTAAAGCCACACGGTTATAGGCACAGTGTTCTCTCCATGTTCTCCCAGCAGTTTTGGCAGCTCTGAGTACACCTTGATGGCATCCACATAAGACACTGGATTGTTCTCCAGGGCAAAATCTCCATGAAAAGTGCAGctaaacttatttattttctcctGTTCTGATTCACTCATGTTCACTGATGCCTGACCTTCAACTGATATTGTAGGAATGTTTTTGATTGCTGCTTGGAGCTCACCGTGTATTTCTTGATGGTTTTCATTGGATGAAACCTCTCTGTCAAAAATGAAGAAGGCTTGAGCTCCGTACAGTAGACCTGTAATAACATGTGTGGCTGAGCCCTCCCGCAATACATTGCAATGCTTTATGTTCCCTGCTCCCAAATGCTTCATAGTTAACTGCTCAAAACGTGAGGTTGTTCGATATTGTAAGGTCACTCGAGACTGATGTttagatttctttttattttttaaaaagtctgctGACCCTTTCACTTTAACTAATCCACCTATAAAGCTGGCTTCAAGAGATGCAGAAATATTCAAGGCTTCTGCTTTGTCTTCGCTTGAATCTGAGGCAATGATTTTGAAGTCAGTATTGGGCTGCGGTCGTACATTAATATTCTTCTGCAGCATCTCAGCATCCCAAAGAGTTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033681 True 2963 lncRNA 0.42 2 47980867 47998420

Neighbor

gene id symbol gene type direction distance location
XLOC_015887 NA coding upstream 4161 47973613 ~ 47976706 (+)
XLOC_015886 ftr19 coding upstream 29300 47944967 ~ 47951567 (+)
XLOC_015885 ftr26 coding upstream 37375 47935476 ~ 47943492 (+)
XLOC_015884 ftr25 coding upstream 51584 47927026 ~ 47929283 (+)
XLOC_015882 NA coding upstream 63895 47841571 ~ 47916972 (+)
XLOC_015889 klf6b coding downstream 75552 48073972 ~ 48082182 (+)
XLOC_015890 pitrm1 coding downstream 90637 48089057 ~ 48119409 (+)
XLOC_015891 NA coding downstream 264610 48263030 ~ 48264841 (+)
XLOC_015892 NA coding downstream 277178 48275598 ~ 48276079 (+)
XLOC_015893 lpar5a coding downstream 284170 48282590 ~ 48284160 (+)
XLOC_015877 NA non-coding upstream 656488 47308209 ~ 47324379 (+)
XLOC_015876 NA non-coding upstream 682769 47295989 ~ 47298098 (+)
XLOC_015874 BX248512.2 non-coding upstream 831298 47148933 ~ 47149569 (+)
XLOC_015895 NA non-coding downstream 298632 48297052 ~ 48297450 (+)
XLOC_015896 NA non-coding downstream 382490 48380910 ~ 48387392 (+)
XLOC_015900 NA non-coding downstream 809045 48807465 ~ 48812680 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G14850 LOC107724821,LOC107698475,LOC107573003,LOC107709797,LOC107680183,LOC107577770 non-coding NC_056700.1 CM032069.1 23668563 ~ 23683398 (+)