XLOC_015889 (klf6b)


Basic Information

Item Value
gene id XLOC_015889
gene name klf6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 48073972 ~ 48082182 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031535
ACAGGCTTCCTTCCTCGGTTGAAGTGAAGTGAGAACATGAAGGGGGTATGTTTATATACCTCCCCAGAAATAGCGCCAACTACAACTCACCAATCATCACACAGAAGGATAAGCCAACAACCAATCACCATCCAATTACCCGGACTGCCTCTCTAAGTGGGTGGAGTCTAGATAGTGGGCGTGGGACTATCTGCGCGCCTCTGATTCGTTCACTGACAGCTGATGACGACACGCAGCGTGTTAGGTTTGTTTTGAAATGGGAAGTTTGCAGTTTACAGCGCTTTCTCTGCAGCCGAGTGTTCGCTACCGCTACAGACAAAGCTGCTGCCTTACATGAAGACACGGCGGGAAAACGCATTTTCAAGCTGAATTTGACAGTTCTGGGAGGGATATGGATGTTATTCCTATGTGTAGTATATTCCAGGAGCTGCAGAGTGTGCTTGACACGGGATACCTGTCCGCGTTACCGTCTCTGGAGGAGTACTGGCAACAGacTTGTCTTGAGCTTGAGCGCTATCTGCAGAGCGAGCCCTATGTCTCTGCAGCAGATCTGAGGTCAGTATGCGAATCCGACCATCTGTGGAGCCAGTTTGTGCGGTGCTGTGGGACAGAAGCAAACCTGTCCCCACCGGGAGCCTCTATCCCCAGACAGGATGAGATCGCAGCATCCTGCCATTCATCATTCGGCAGCTGTGAGAAGATCATCGCATCTGCTGATGTTCACACACACCCACTGGGCCACAACGCGTCTGAGCAGCAGTGTGTAATCGCAAGCACACCGCCCTCCTCGCCCTCACTGGTGAAAGAAGATGCAGACGGTCCAAGAGGGGAGGAGGTCAGATGTGAAGGGTCACCTGAAGGACGAAGGAGAGCTCATCGATGCTACTTTAACGGTTGCAGGAAGGTTTACACAAAGAGTTCTCACCTGAAAGCACATCAGCGCACACACACGGGTGAAAAGCCATATAGGTGTTCGTGGGAAGGCTGTGAGTGGCGTTTCGCTCGAAGTGATGAACTGACCAGACACTTCAGAAAACACACTGGAGCAAAACCTTTCAAATGCAGCCACTGTGACaggtgcgtgtgtgcgcgcgcacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgtgtgtgtgtgatgcagcaTTTAATGGCTCATTTCCTGTAACTGGTAAGAACAGTACAATACTCAATTTCTAA
>TCONS_00031536
TTTACAGCGCTTTCTCTGCAGCCGAGTGTTCGCTACCGCTACAGACAAAGCTGCTGCCTTACATGAAGACACGGCGGGAAAACGCATTTTCAAGCTGAATTTGACAGTTCTGGGAGGGATATGGATGTTATTCCTATGTGTAGTATATTCCAGGAGCTGCAGAGTGTGCTTGACACGGGATACCTGTCCGCGTTACCGTCTCTGGAGGAGTACTGGCAACAGacTTGTCTTGAGCTTGAGCGCTATCTGCAGAGCGAGCCCTATGTCTCTGCAGCAGATCTGAGGTCAGTATGCGAATCCGACCATCTGTGGAGCCAGTTTGTGCGGTGCTGTGGGACAGAAGCAAACCTGTCCCCACCGGGAGCCTCTATCCCCAGACAGGATGAGATCGCAGCATCCTGCCATTCATCATTCGGCAGCTGTGAGAAGATCATCGCATCTGCTGATGTTCACACACACCCACTGGGCCACAACGCGTCTGAGCAGCAGTGTGTAATCGCAAGCACACCGCCCTCCTCGCCCTCACTGGTGAAAGAAGATGCAGACGGTCCAAGAGGGGAGGAGGTCAGATGTGAAGGGTCACCTGAAGGACGAAGGAGAGCTCATCGATGCTACTTTAACGGTTGCAGGAAGGTTTACACAAAGAGTTCTCACCTGAAAGCACATCAGCGCACACACACGGGTGAAAAGCCATATAGGTGTTCGTGGGAAGGCTGTGAGTGGCGTTTCGCTCGAAGTGATGAACTGACCAGACACTTCAGAAAACACACTGGAGCAAAACCTTTCAAATGCAGCCACTGTGACagGTGTTTCTCTCGTTCTGATCATCTGGCTCTGCACATGAAGAGACACATCTGAATGACGAGCAGCGAGAGACGAACAACCTGCTACAGCACAAAAACAAACCAAGCGTGTGTGTGAGAATCCCAAACACCTGCACGGctgtttttgtgtgcattcagTGAGTGCCTGCGTTGCACATTTTGCACCTACTTCTTATATGCATTCAAATCGAGACTTAAAAAAAGGATggcattttatttgttaatttaatgcaCAACGTTCTGGTGCTGAATAGAGGTTAACTTGTTTGTAGAATTTCCAAATTGGGGTAAATTCATTTCACCTGGggtaaaa

Function

symbol description
klf6b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in midbrain. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human KLF6 (Kruppel like factor 6).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-633 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in midbrain. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human KLF6 (Kruppel like factor 6).

Ensembl:

ensembl_id ENSDARG00000038561

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031535 False 1222 mRNA 0.51 3 48073972 48080964
TCONS_00031536 True 1137 mRNA 0.49 4 48074243 48082182

Neighbor

gene id symbol gene type direction distance location
XLOC_015888 NA coding upstream 75552 47980867 ~ 47998420 (+)
XLOC_015887 NA coding upstream 97266 47973613 ~ 47976706 (+)
XLOC_015886 ftr19 coding upstream 122405 47944967 ~ 47951567 (+)
XLOC_015885 ftr26 coding upstream 130480 47935476 ~ 47943492 (+)
XLOC_015884 ftr25 coding upstream 144689 47927026 ~ 47929283 (+)
XLOC_015890 pitrm1 coding downstream 6875 48089057 ~ 48119409 (+)
XLOC_015891 NA coding downstream 180848 48263030 ~ 48264841 (+)
XLOC_015892 NA coding downstream 193416 48275598 ~ 48276079 (+)
XLOC_015893 lpar5a coding downstream 200408 48282590 ~ 48284160 (+)
XLOC_015894 hes6 coding downstream 206279 48288461 ~ 48304696 (+)
XLOC_015882 NA non-coding upstream 157000 47841571 ~ 47916972 (+)
XLOC_015877 NA non-coding upstream 749593 47308209 ~ 47324379 (+)
XLOC_015876 NA non-coding upstream 775874 47295989 ~ 47298098 (+)
XLOC_015895 NA non-coding downstream 214870 48297052 ~ 48297450 (+)
XLOC_015896 NA non-coding downstream 298728 48380910 ~ 48387392 (+)
XLOC_015900 NA non-coding downstream 725283 48807465 ~ 48812680 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000118_00366254_00372631 NA coding CI01000118 null 366254 ~ 372944 (+)