XLOC_015891


Basic Information

Item Value
gene id XLOC_015891
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 48263030 ~ 48264841 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033682
ATTACAAATAGTCTatataaaatgatacattttttgaCATTGGTGTTCGGCTTGGCGTTAAACATTATGGCGTTGGTGGTGTTCTGCAGGCTGCTCCGAAAATGGACAGAGTCTTCAATCTACATGACTAATCTGGCACTGATggacctgctgctgctgcttcagtTGCCCTTCAAAATGCACGCCGCGCACCACGAGTGGGCAGAGGACAAGAAGCTGCTCTGCTCCTTCCTGGAAAGTCTTTATTTTGTGGCTATGTATGGTAGTATCTACACAATTGCATGCATAGCCCTAGACCGATACTTCGCAATAAACCACCCGTTTCGTGCCAAGCAGTTGCGCTCGAAAAGAAACGCCTTGATTATTTGTGTGTTCATCTGGCTGTTTGTGATGGGAGCCACTTCACCGATTTACACCTTCCGCAGAGAAAAGACTGGTAATTTTACATGTTTTCATGGTTTTTCGGATAAAGGTTGGAGCACTGCACTAATTGTGTGCCTGGAGGTCTTTGGTTTCCTGTTGCCTGCCGCGGTACTGGTGGTGTGTTCGATTCAGAGCATCCGTACACTCAAAGCTACAAAAAACAGCAACCGTAAGAAGCAAGCTGGTGTGAGAATCATCTACAGCAGCCTCGCTGCCTTCCTAGTGCCCTTCACTCCTTGTCACATTGCCATATTCCTCCAGTATCTAGTCCGAAATGACCACATTTTAGACTGCAAAAAGAAGCAGGACATCGCTCTCTTCATACAGGTCTCTATCAACATCGCAAATGTGACCTGCTGCTTGGACGCACTGTGTTACTATTTCATCGCCAAGGAAGTTCGATCCACGCTTGAAGCACACAGCGCAAAGGAATTGCATTTCTATGAAAAATCCTGCAGGGTCACCTCAGGG
>TCONS_00031539
TGACGAACTGCTCAACTGAAGGTGTGGATACTTTAACAAAGAAGCTGGATTTGGTGATTTACGTGCCCATCCTGGTGTTCGGCTTGGCGTTAAACATTATGGCGTTGGTGGTGTTCTGCAGGCTGCTCCGAAAATGGACAGAGTCTTCAATCTACATGACTAATCTGGCACTGATggacctgctgctgctgcttcagtTGCCCTTCAAAATGCACGCCGCGCACCACGAGTGGGCAGAGGACAAGAAGCTGCTCTGCTCCTTCCTGGAAAGTCTTTATTTTGTGGCTATGTATGGTAGTATCTACACAATTGCATGCATAGCCCTAGACCGATACTTCGCAATAAACCACCCGTTTCGTGCCAAGCAGTTGCGCTCGAAAAGAAACGCCTTGATTATTTGTGTGTTCATCTGGCTGTTTGTGATGGGAGCCACTTCACCGATTTACACCTTCCGCAGAGAAAAGACTGGTAATTTTACATGTTTTCATGGTTTTTCGGATAAAGGTTGGAGCACTGCACTAATTGTGTGCCTGGAGGTCTTTGGTTTCCTGTTGCCTGCCGCGGTACTGGTGGTGTGTTCGATTCAGAGCATCCGTACACTCAAAGCTACAAAAAACAGCAACCGTAAGAAGCAAGCTGGTGTGAGAATCATCTACAGCAGCCTCGCTGCCTTCCTAGTGCCCTTCACTCCTTGTCACATTGCCATATTCCTCCAGTATCTAGTCCGAAATGACCACATTTTAGACTGCAAAAAGAAGCAGGACATCGCTCTCTTCATACAGGTCTCTATCAACATCGCAAATGTGACCTGCTGCTTGGACGCACTGTGTTACTATTTCATCGCCAAGGAAGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000038553

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033682 False 894 lncRNA 0.46 3 48263030 48264841
TCONS_00031539 True 853 processed_pseudogene 0.47 1 48263750 48264602

Neighbor

gene id symbol gene type direction distance location
XLOC_015890 pitrm1 coding upstream 143621 48089057 ~ 48119409 (+)
XLOC_015889 klf6b coding upstream 180848 48073972 ~ 48082182 (+)
XLOC_015888 NA coding upstream 264610 47980867 ~ 47998420 (+)
XLOC_015887 NA coding upstream 286324 47973613 ~ 47976706 (+)
XLOC_015886 ftr19 coding upstream 311463 47944967 ~ 47951567 (+)
XLOC_015892 NA coding downstream 10757 48275598 ~ 48276079 (+)
XLOC_015893 lpar5a coding downstream 17749 48282590 ~ 48284160 (+)
XLOC_015894 hes6 coding downstream 23620 48288461 ~ 48304696 (+)
XLOC_015895 NA coding downstream 32211 48297052 ~ 48297450 (+)
XLOC_015896 NA coding downstream 116069 48380910 ~ 48387392 (+)
XLOC_015882 NA non-coding upstream 346058 47841571 ~ 47916972 (+)
XLOC_015877 NA non-coding upstream 938651 47308209 ~ 47324379 (+)
XLOC_015876 NA non-coding upstream 964932 47295989 ~ 47298098 (+)
XLOC_015900 NA non-coding downstream 542624 48807465 ~ 48812680 (+)
XLOC_015908 BX323861.1 non-coding downstream 1382117 49646958 ~ 49647989 (+)

Expression


Co-expression Network