XLOC_015894 (hes6)


Basic Information

Item Value
gene id XLOC_015894
gene name hes6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 48288461 ~ 48304696 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031541
TGCATCACATCCCCCTCTGCGTGCTCTAACTGGAGGTGTTCTGCCTGCTCTACGCTCCGTCCTGAACTGCAGCAATATGGCCCCTGCGTCCCGCAGCAACACTCACGACGAGGATTATTACGGAATAAAAGACAGAAAGACGAGGAAACCGCTGGTGGAGAAAAAGAGACGCGCCCGGATAAATGAAAGTTTACAGGAGCTTCGGCTACTGCTAGCCGACCCGGATGCGCAGGTAAAAATGGAGAACGCCGAGGTGTTGGAAATGACCGTGAAGCGCGTGGAAAGTATACTGCAAAACAAAGCGAAGGAGGCTGACAGTGTGAACCGCGAGGCCAACGAGCGCTTCGCCGCGGGCTACATCCAGTGCATGCATGAAGTGCACACATTCGTGTCCAGCTGCCCGGGCATCGACGCCACCATCGCCGCAGATCTGCTGAACCACCTCCTCGAATGTATGCCTCTGAACGACGAGGAGCGCTTTCAGGACATTCTGTCAGACCTCATTTCGGACTCTAACAACTCTGGCACTTGGCCTGGCGAGGCGGCGTACGCTACGTTG
>TCONS_00031542
GGCCACTATCCACAGTATATGTAGTGCTTGTTAGCACAGACTTTTGTCTCGAACTGAACCCGCCGACCATCTGCCCCCCATTCAAGCGTCCTGAACTGCAGCAATATGGCCCCTGCGTCCCGCAGCAACACTCACGACGAGGATTATTACGGAATAAAAGACAGAAAGACGAGGAAACCGCTGGTGGAGAAAAAGAGACGCGCCCGGATAAATGAAAGTTTACAGGAGCTTCGGCTACTGCTAGCCGACCCGGATGCGCAGGTAAAAATGGAGAACGCCGAGGTGTTGGAAATGACCGTGAAGCGCGTGGAAAGTATACTGCAAAACAAAGCGAAGGAGGCTGACAGTGTGAACCGCGAGGCCAACGAGCGCTTCGCCGCGGGCTACATCCAGTGCATGCATGAAGTGCACACATTCGTGTCCAGCTGCCCGGGCATCGACGCCACCATCGCCGCAGATCTGCTGAACCACCTCCTCGAATGTATGCCTCTGAACGACGAGGAGCGCTTTCAGGACATTCTGTCAGACCTCATTTCGGACTCTAACAACTCTGGCACTTGGCCTGGCGAGGCGGCGTACGCTACGTTGTCGCCCGGAGGGACGAGCGTGGCCAACGGTGGCTCCTCCGCCTTGTCCCCGGCCCCGTCCACCACCTCCAGCGACGACATTTGTTCTGACCTGGACGACACAGACACGGAGCACAGCCGCATCTCGGTAGATGCCGGAGATCAGGCGCCAGTCGTGCCAACATTATACACCAACAAGTCCATTTGGAGACCCTGGTAGACAGATGCTCACCTCCGCCGATTCATGAACATTCAAGTATATTTTCTAGTTTAGAAAATAGTCCAGGATTGAGCACCTTTGTGAACCAGTTCTACTTTAGTAATAGGGCGACTTTTTTGTCATCGACCTGTGGATATACCCCTCAGTAAGCTCTTCTAGGTGCAACAATAATGTGCATTTCAGTCCACTTCAGTTACACagaattagtattttatttaattgtgtgttttttgtatAAGCTAAGTTAAGGAAAATACACTGTAAGGATAAATAATATGTCTAGGGAGTGTGTTCCCATCTCTTAATTATTGTAGGATAGGATGTAAATATTTCAATGTCGTTGCTGTAGATAGATCTATGACAGTTATTGTGATTTTTGTGAcgggaagaaaaaaaataagtgtaaatgtCGGGAATAATGTGTTTTATATGTGATTTTACCCTTCATTAAAGCATCTTTCTGATTTGCTACTGCAAA
>TCONS_00031543
ACTGAACCCGCCGACCATCTGCCCCCCATTCAAGCGTCCTGAACTGCAGCAATATGGCCCCTGCGTCCCGCAGCAACACTCACGACGAGGATTATTACGGAATAAAAGACAGAAAGGTACGCAAACACGTCTTTTAATCACCCACAGAAAAGTTTGTCGACGTTTCCCACAACTATTTTTCTCTCCTCAGACGAGGAAACCGCTGGTGGAGAAAAAGAGACGCGCCCGGATAAATGAAAGTTTACAGGAGCTTCGGCTACTGCTAGCCGACCCGGATGCGCAGGTAAAAATGGAGAACGCCGAGGTGTTGGAAATGACCGTGAAGCGCGTGGAAAGTATACTGCAAAACAAAGCGAAGGAGGCTGACAGTGTGAACCGCGAGGCCAACGAGCGCTTCGCCGCGGGCTACATCCAGTGCATGCATGAAGTGCACACATTCGTGTCCAGCTGCCCGGGCATCGACGCCACCATCGCCGCAGATCTGCTGAACCACCTCCTCGAATGTATGCCTCTGAACGACGAGGAGCGCTTTCAGGACATTCTGTCAGACCTCATTTCGGACTCTAACAACTCTGGCACTTGGCCTGGCGAGGCGGCGTACGCTACGTTGTCGCCCGGAGGGACGAGCGTGGCCAACGGTGGCTCCTCCGCCTTGTCCCCGGCCCCGTCCACCACCTCCAGCGACGACATTTGTTCTGACCTGGACGACACAGACACGGAGCACAGCCGCATCTCGGTAGATGCCGGAGATCAGGCGCCAGTCGTGCCAACATTATACACCAACAAGTCCATTTGGAGACCCTGGTAGACAGATGCTCACCTCCGCCGATTCATGAACATTCAAGTATATTTTCTAGTTTAGAAAATAGTCCAGGATTGAGCACCTTTGTGAACCAGTTCTACTTTAGTAATAGGGCGACTTT
>TCONS_00031544
AAATGAAAGTTTACAGGAGCTTCGGCTACTGCTAGCCGACCCGGATGTAAGTTTATCCAGACTATCACTTCTTCAGACTTATGCATGTCCACTCTCACTGTATATCCACTGTACGCACATTTCACATCGCGCTTTGCGTCATTTGTAGGCGCAGGTAAAAATGGAGAACGCCGAGGTGTTGGAAATGACCGTGAAGCGCGTGGAAAGTATACTGCAAAACAAAGCGAAGGAGGCTGACAGTGTGAACCGCGAGGCCAACGAGCGCTTCGCCGCGGGCTACATCCAGTGCATGCATGAAGTGCACACATTCGTGTCCAGCTGCCCGGGCATCGACGCCACCATCGCCGCAGATCTGCTGAACCACCTCCTCGAATGTATGCCTCTGAACGACGAGGAGCGCTTTCAGGACATTCTGTCAGACCTCATTTCGGACTCTAACAACTCTGGCACTTGGCCTGGCGAGGCGGCGTACGCTACGTTGTCGCCCGGAGGGACGAGCGTGGCCAACGGTGGCTCCTCCGCCTTGTCCCCGGCCCCGTCCACCACCTCCAGCGACGACATTTGTTCTGACCTGGACGACACAGACACGGAGCACAGCCGCATCTCGGTAGATGCCGGAGATCAGGCGCCAGTCGTGCCAACATTATACACCAACAAGTCCATTTGGAGACCCTGGTAGACAGATGCTCACCTCCGCCGATTCATGAACATTCAAGTATATTTTCTAGTTTAGAAAATAGTCCAGGATTGAGCACCTTTGTGAACCAGTTCTACTTTAGTAATAGGGCGACTTT

Function

symbol description
hes6 Enables protein heterodimerization activity. Acts upstream of or within negative regulation of transcription, DNA-templated and somitogenesis. Predicted to be part of transcription repressor complex. Predicted to be active in nucleus. Is expressed in several structures, including eye; margin; optic vesicle; pectoral fin; and segmental plate. Orthologous to human HES6 (hes family bHLH transcription factor 6).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0001756 somitogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0017053 transcription repressor complex cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030828-5 Enables protein heterodimerization activity. Acts upstream of or within negative regulation of transcription, DNA-templated and somitogenesis. Predicted to be part of transcription repressor complex. Predicted to be active in nucleus. Is expressed in several structures, including eye; margin; optic vesicle; pectoral fin; and segmental plate. Orthologous to human HES6 (hes family bHLH transcription factor 6).

Ensembl:

ensembl_id ENSDARG00000019335

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031541 False 559 mRNA 0.56 5 48288461 48304020
TCONS_00031542 False 1264 mRNA 0.48 4 48303142 48304696
TCONS_00031543 False 923 lncRNA 0.54 3 48303194 48304333
TCONS_00031544 True 794 lncRNA 0.53 2 48303425 48304333

Neighbor

gene id symbol gene type direction distance location
XLOC_015893 lpar5a coding upstream 4301 48282590 ~ 48284160 (+)
XLOC_015892 NA coding upstream 12382 48275598 ~ 48276079 (+)
XLOC_015891 NA coding upstream 23620 48263030 ~ 48264841 (+)
XLOC_015890 pitrm1 coding upstream 169052 48089057 ~ 48119409 (+)
XLOC_015889 klf6b coding upstream 206279 48073972 ~ 48082182 (+)
XLOC_015896 NA coding downstream 76214 48380910 ~ 48387392 (+)
XLOC_015897 CR381673.1 coding downstream 315459 48620155 ~ 48627261 (+)
XLOC_015898 CR381673.2 coding downstream 334131 48638827 ~ 48653207 (+)
XLOC_015899 si:dkey-53k12.1 coding downstream 382832 48687528 ~ 48693669 (+)
XLOC_015900 NA coding downstream 502769 48807465 ~ 48812680 (+)
XLOC_015888 NA non-coding upstream 290041 47980867 ~ 47998420 (+)
XLOC_015887 NA non-coding upstream 311755 47973613 ~ 47976706 (+)
XLOC_015882 NA non-coding upstream 371489 47841571 ~ 47916972 (+)
XLOC_015908 BX323861.1 non-coding downstream 1342262 49646958 ~ 49647989 (+)
XLOC_015912 BX284666.1 non-coding downstream 1551050 49855746 ~ 49856793 (+)
XLOC_015915 BX927101.1 non-coding downstream 1897942 50202638 ~ 50203295 (+)

Expression


Co-expression Network