XLOC_015896


Basic Information

Item Value
gene id XLOC_015896
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 48380910 ~ 48387392 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033312
CGGGTTGTCTTTTGGATCCTATCCTGGGCATTACGTCACCACACCAAGAGGACACATCGCTGAGCTAAAGTTCTTCAAATCAGCAACAATGATGAAACTACATCTACATCTCAAATGGCCAGAGGGTGAGTCCATTTACTGCAACTTATGACTGAACTGTCTCCTTACACCAACATTGCAAACTGATGTTCACCTGCTTCCCCTTTTGCCCAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033312 True 214 lncRNA 0.45 2 48380910 48387392

Neighbor

gene id symbol gene type direction distance location
XLOC_015894 hes6 coding upstream 76214 48288461 ~ 48304696 (+)
XLOC_015895 NA coding upstream 83460 48297052 ~ 48297450 (+)
XLOC_015893 lpar5a coding upstream 96750 48282590 ~ 48284160 (+)
XLOC_015892 NA coding upstream 104831 48275598 ~ 48276079 (+)
XLOC_015891 NA coding upstream 116069 48263030 ~ 48264841 (+)
XLOC_015897 CR381673.1 coding downstream 232763 48620155 ~ 48627261 (+)
XLOC_015898 CR381673.2 coding downstream 251435 48638827 ~ 48653207 (+)
XLOC_015899 si:dkey-53k12.1 coding downstream 300136 48687528 ~ 48693669 (+)
XLOC_015900 NA coding downstream 420073 48807465 ~ 48812680 (+)
XLOC_015901 abhd17aa coding downstream 651767 49039159 ~ 49063911 (+)
XLOC_015888 NA non-coding upstream 382490 47980867 ~ 47998420 (+)
XLOC_015887 NA non-coding upstream 404204 47973613 ~ 47976706 (+)
XLOC_015908 BX323861.1 non-coding downstream 1259566 49646958 ~ 49647989 (+)
XLOC_015912 BX284666.1 non-coding downstream 1468354 49855746 ~ 49856793 (+)
XLOC_015915 BX927101.1 non-coding downstream 1815246 50202638 ~ 50203295 (+)
XLOC_015916 NA non-coding downstream 1886686 50274078 ~ 50279241 (+)

Expression


Co-expression Network