XLOC_015900


Basic Information

Item Value
gene id XLOC_015900
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 48807465 ~ 48812680 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033313
CTTAATTCAACTGCATTGTACATCCATGAGTTTGCAATGCAGTattcccagacagcacacatacgttgggccgacgtcggccgaaggtcaacacgtcggcccctttaattctaacatcggtatatgatcggccaaacatacgcatgatcgttcggtcgtgtgttctattgttccagctcAACAAACGTCGGCTCTGCATCGGTTAACGACCAGAGGCCGACGAAGCACTTTATCTCTCATACCCATGAAAGAATCCGGCAACATATttggtttacaaACTTtaatgtgcgcgcgcgcgtcttCAAACACTGGAGCGGAGAGGATGTTGCTATGGGAAACGAAGCTAACACGACACGACACCACCCAAAAGACACAACACGACTTCTCTCAAGCTGCCGTTTTGACtgttttcaggagtgagagaataacctcctgctacagaaaatataactcaagattcctaaatttctga
>TCONS_00033314
gagtgagagaataacctcctgctacagaaaatataactcaagattcctaaatttctgaagggagctgatcacagagatacaggaaagacaggaggtctaagtttaacctaagtgccgtgttgctgatgaacatctttatattccctttattaatctggggtcaccacagcggaatgaactgtcaacttatccagcatatgttttacgcagtggatgcccttacagctgcaacccatcactgggtaacaaccatatacgcttattctcactcatacactacagacaatttagcctacccaattcacctgtaccccatgtctttggacttgtaggcaaaactggagcacccagagaaaacccacgcaaacgcagagagaatttgcaaactccacacagaaatgccagctgatccagccgaggctcgagtcagcatccttgcttattggatgcctgattgcagttcaactccaaacttagttggaccagctgatcagtgtcttcagtattaccacaagctactgggcagatgtgtggacagctatgagccaaacttgggacgtttggtttttagcAGGTGGAGAGACCGTCTGGgcagcagaaacaagacaactaatcatagttga
>TCONS_00033315
gaggtctaagtttaacctaagtgccgtgttgctgatgaacatctttatattccctttattaatctggggtcaccacagcggaatgaactgtcaacttatccagcatatgttttacgcagtggatgcccttacagctgcaacccatcactgggtaacaaccatatacgcttattctcactcatacactacagacaatttagcctacccaattcacctgtaccccatgtctttggacttgtaggcaaaactggagcacccagagaaaacccacgcaaacgcagagagaatttgcaaactccacacagaaatgccagctgatccagccgaggctcgagtcagcatccttgctgtaaggcgacagcactacctattgtgccaccacgtcacgctcttattaaattatatttatataatgttgtttcagtacatactattttgggaagacaaaatatattcataagctctcagaaaattcaataagagaattaactgcacaattacttgaaatgtgtggatgggattacattatttgttaacccaaagtgagtttctctttctttgcagtattggatgcctgattgcagttcaactccaaacttagttggaccagctgatcagtgtcttcagtattaccacaagctactgggcagatgtgtggacagctatgagccaaacttgggacgtttggtttttagcAGGTGGAGAGACCGTCTGGgcagcagaaacaagacaactaatcatagttgagttgagattagtattattaacttgactagtttggttgcagacttgttcaatacttaacaatttgtataagttacaagatcaatggtcctgctatcaatgtttttgtaacttaaattcattacagtttagatacaatcaaatgtccaaaccatctctgagtgaatgacatcaaggaaacaggatcaaaagatcattcattatagaccgtttcatagatcattctgttctcctggttgtgaggatgtgcagaggctgtatttgtcagtgttaaaagacttgtgcagctttatccagacatacaagcagccgacaaagagttctggagcaggacagacagggcagcacggtggcgcagagggtagcacgtttgcctcacagcaagaaggttgctgcttcaagcttcggctgggtcagttggcgtttctgtgtgaagtttgcatgctctccccgtgttggcatgggtttcctccgggtgctccggttttcccaagtccaaagacatag

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0030163 protein catabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005829 cytosol cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0031369 translation initiation factor binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033313 False 472 lncRNA 0.47 3 48807465 48808894
TCONS_00033314 False 623 lncRNA 0.45 5 48808837 48810864
TCONS_00033315 True 1251 lncRNA 0.43 5 48809596 48812680

Neighbor

gene id symbol gene type direction distance location
XLOC_015899 si:dkey-53k12.1 coding upstream 113796 48687528 ~ 48693669 (+)
XLOC_015898 CR381673.2 coding upstream 154258 48638827 ~ 48653207 (+)
XLOC_015897 CR381673.1 coding upstream 180204 48620155 ~ 48627261 (+)
XLOC_015896 NA coding upstream 420073 48380910 ~ 48387392 (+)
XLOC_015894 hes6 coding upstream 502769 48288461 ~ 48304696 (+)
XLOC_015901 abhd17aa coding downstream 226479 49039159 ~ 49063911 (+)
XLOC_015902 sema6ba coding downstream 419879 49232559 ~ 49342504 (+)
XLOC_015903 rorcb coding downstream 605220 49417900 ~ 49454451 (+)
XLOC_015904 sh3gl1a coding downstream 644769 49457449 ~ 49511458 (+)
XLOC_015905 stap2a coding downstream 709498 49522178 ~ 49603681 (+)
XLOC_015895 NA non-coding upstream 510015 48297052 ~ 48297450 (+)
XLOC_015892 NA non-coding upstream 531386 48275598 ~ 48276079 (+)
XLOC_015891 NA non-coding upstream 542624 48263030 ~ 48264841 (+)
XLOC_015888 NA non-coding upstream 809045 47980867 ~ 47998420 (+)
XLOC_015908 BX323861.1 non-coding downstream 834278 49646958 ~ 49647989 (+)
XLOC_015912 BX284666.1 non-coding downstream 1043066 49855746 ~ 49856793 (+)
XLOC_015915 BX927101.1 non-coding downstream 1389958 50202638 ~ 50203295 (+)
XLOC_015916 NA non-coding downstream 1461398 50274078 ~ 50279241 (+)
XLOC_015919 CABZ01053213.1 non-coding downstream 1777652 50590332 ~ 50590448 (+)

Expression


Co-expression Network