XLOC_015904 (sh3gl1a)


Basic Information

Item Value
gene id XLOC_015904
gene name sh3gl1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 49457449 ~ 49511458 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031554
ATATAAACAACATATatttaaacacattataaaatacatttaaataagtcACACCTTTATTGCTGAAATTGCTGAGAAACAGCGCGCAAAGGGAGCCACGCATCCTGACGTTGGCAAGCAGCCGACCAATCAGAAATCTTCCATCATACGCGACGCGTGTATATGAGCGTTCTAGTTGCGTCGCGTCGCGGTATAGATGATGGGGTGTGACGTGCACTGCAGGTTCAAACTCTAGTCTGAGCAGGAAGAAGGAATTGCGAGAGTTTTCTCACAGTTTTTCAAACGctctctgtttttgtttttaactattGATCTAACATTACACCGACATTTGTGACAAAGACAGGATCAAACGCAAAGATGTCTGTCGCCGGACTGAAGAAACAGTTTTACAAAGCCAGTCAGttgaTGAGTGAGAAGGTTGGAGGAGCAGAAGGAACCAAACTGGACGAGGACTTCAAAGATCTGGAGAGGAAAGCTGACATCACCAGTAAAGCCATATCAGATGTGCTCTGCAAAACTACTGAATACCTGCAGCCAAATCCAGCATCGAGAGCGAGGCTGACGATGGCGAACACCATGTCTAAGATGCGCGGGCAGGTCAAGAGTCTTGGTTATCCACAGGCAGAGGGCCTTCTGGGAGAATGCATGCTGAAATACGGTCGAGACATGGGAGAAGACACCAACTTCGGCGGTGCTTTAGTGGAGATGGGGGAGGCCATGAAGAGATTGGCAGAAGTCAAAGACTCTCTAGACATTGACGTCAAGCAGAACTTCATCGACCCTTTCCAAACGATAGTCGACAAGGACCTGAAAGACATTCAGcATCACTTGAAGAAACTGGAGGGCCGTCGACTGGATTACGACTACAAGAAGAAACGTCAGGGGAAAATTGCTGATGAGGAGCTCCGGATGGCAATGGAGAAGTTTGAGGAGTCCAGAGACGCAGCAGAAACCAGCATGCAGAACCTGCTGGATACTGACgtggagCAGGTCAGTCAACTCTGTGCTCTGGTGGAATCTCAGCTGCAGTTTCACAAACAGTCGATGCAGGTCCTGGAGGAGCTGGCAGGGGCCATGAGAGAAAGAGTAAACAAGGCCCAGTCTCAGCCTCGGCAGAAGCGGATGCCTGTGTCCAGACCGAGCATTGATTACTCGGATCCAGAAGACTCCAACGGAGGCTGGAATCCATCAGCAGCAGCACCACCCTCATACTCATCCACAGCCGCAGATCAGCCGTGCTGCAGAGCTCTGTATGACTTTGAGCCGGAAAATGAGGGAGAGCTGGGCTTTAACGAGGGCGATGTGATCACACTCACCAACCAGATTGACGACAACTGGTATGAGGGAAGCTTTCGTGGTCAGACTGGACTCTTTCCATGCAACTACGTGGAGGTGATGGTGCCTCTGCGCTAA
>TCONS_00031555
GCGTCGCGTCGCGGTATAGATGATGGGGTGTGACGTGCACTGCAGGTTCAAACTCTAGTCTGAGCAGGAAGAAGGAATTGCGAGAGTTTTCTCACAGTTTTTCAAACGctctctgtttttgtttttaactattGATCTAACATTACACCGACATTTGTGACAAAGACAGGATCAAACGCAAAGATGTCTGTCGCCGGACTGAAGAAACAGTTTTACAAAGCCAGTCAGttgaTGAGTGAGAAGGTTGGAGGAGCAGAAGGAACCAAACTGGACGAGGACTTCAAAGATCTGGAGAGGAAAGCTGACATCACCAGTAAAGCCATATCAGATGTGCTCTGCAAAACTACTGAATACCTGCAGCCAAATCCAGCATCGAGAGCGAGGCTGACGATGGCGAACACCATGTCTAAGATGCGCGGGCAGGTCAAGAGTCTTGGTTATCCACAGGCAGAGGGCCTTCTGGGAGAATGCATGCTGAAATACGGTCGAGACATGGGAGAAGACACCAACTTCGGCGGTGCTTTAGTGGAGATGGGGGAGGCCATGAAGAGATTGGCAGAAGTCAAAGACTCTCTAGACATTGACGTCAAGCAGAACTTCATCGACCCTTTCCAAACGATAGTCGACAAGGACCTGAAAGACATTCAGcATCACTTGAAGAAACTGGAGGGCCGTCGACTGGATTACGACTACAAGAAGAAACGTCAGGGGAAAATTGCTGATGAGGAGCTCCGGATGGCAATGGAGAAGTTTGAGGAGTCCAGAGACGCAGCAGAAACCAGCATGCAGAACCTGCTGGATACTGACgtggagCAGGTCAGTCAACTCTGTGCTCTGGTGGAATCTCAGCTGCAGTTTCACAAACAGTCGATGCAGGTCCTGGAGGAGCTGGCAGGGGCCATGAGAGAAAGAGTAAACAAGGCCCAGTCTCAGCCTCGGCAGAAGCGGATGCCTGTGTCCAGACCGAGCATTGATTACTCGGATCCAGAAGACTCCAACGGAGGCTGGAATCCATCAGCAGCAGCACCACCCTCATACTCATCCACAGCCCCTTCCTTTAACAGGGCATCTTCACGCCAGAAACGTAATTCCGCAGATCAGCCGTGCTGCAGAGCTCTGTATGACTTTGAGCCGGAAAATGAGGGAGAGCTGGGCTTTAACGAGGGCGATGTGATCACACTCACCAACCAGATTGACGACAACTGGTATGAGGGAAGCTTTCGTGGTCAGACTGGACTCTTTCCATGCAACTACGTGGAGGTGATGGTGCCTCTGCGCTAAAAATTACAGCGGATAAACAGTGCAATGTCAGGTACAGACAGAAGCAAAGGGAACATCCCTGACTTCTGTTTCACTACGAGCACCTTTACCTCCTGAAAGACAGAGAATATACAGTTATTATTCCTTCCAGCGCTGTGCTGAAACACTACCATTCCTTCcttcatacagtatataataaatgTTGTTGAGAAAGTTGTCAAAAGTGTTTTGGTAAAGCACTGCTATTCTTTACTTCACATATAATAAACATTGTTGAGAAAGGTGATGAAGATAAAAACCATTTCGGGAGTGTTCCTTGTGGAGTTCAGTAGGTTTTTGTGTTTACTTTGAAATTCGTATCAGCGTCTGCAGAGGAAATGTGTGATGTTGGTGATTACTGTCCTCTAGTGGCCACGTTTGAACATTACAGCTCTTAAGGCGAGACTGTTCACTGCAGGTGAACACTAAAAATATGTATTACTCATAGCGAACACTATATTTCTCCAGGTGATTGAGATTAAGAATTGCAAAGATTATTTGTGATACAagctttaaaaatacaatgtttaaatatgcaaatgaggtgtTTCAATAAATATACACttgtttgcataca

Function

symbol description
sh3gl1a Predicted to enable lipid binding activity. Predicted to be located in early endosome membrane. Is expressed in several structures, including EVL; digestive system; epidermis; hatching gland; and periderm. Human ortholog(s) of this gene implicated in acute myeloid leukemia and high grade glioma. Orthologous to human SH3GL1 (SH3 domain containing GRB2 like 1, endophilin A2).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4524 Predicted to enable lipid binding activity. Predicted to be located in early endosome membrane. Is expressed in several structures, including EVL; digestive system; epidermis; hatching gland; and periderm. Human ortholog(s) of this gene implicated in acute myeloid leukemia and high grade glioma. Orthologous to human SH3GL1 (SH3 domain containing GRB2 like 1, endophilin A2).

Ensembl:

ensembl_id ENSDARG00000067958

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031554 False 1416 mRNA 0.49 9 49457449 49510863
TCONS_00031555 True 1876 mRNA 0.46 10 49457626 49511458

Neighbor

gene id symbol gene type direction distance location
XLOC_015903 rorcb coding upstream 2998 49417900 ~ 49454451 (+)
XLOC_015902 sema6ba coding upstream 114945 49232559 ~ 49342504 (+)
XLOC_015901 abhd17aa coding upstream 393538 49039159 ~ 49063911 (+)
XLOC_015900 NA coding upstream 644769 48807465 ~ 48812680 (+)
XLOC_015899 si:dkey-53k12.1 coding upstream 763780 48687528 ~ 48693669 (+)
XLOC_015905 stap2a coding downstream 10720 49522178 ~ 49603681 (+)
XLOC_015906 si:ch211-209f23.6 coding downstream 119585 49631043 ~ 49634872 (+)
XLOC_015907 si:ch211-209f23.7 coding downstream 133345 49644803 ~ 49646036 (+)
XLOC_015908 BX323861.1 coding downstream 135500 49646958 ~ 49647989 (+)
XLOC_015909 BX323861.3 coding downstream 156309 49667767 ~ 49748059 (+)
XLOC_015896 NA non-coding upstream 1070057 48380910 ~ 48387392 (+)
XLOC_015895 NA non-coding upstream 1159999 48297052 ~ 48297450 (+)
XLOC_015892 NA non-coding upstream 1181370 48275598 ~ 48276079 (+)
XLOC_015891 NA non-coding upstream 1192608 48263030 ~ 48264841 (+)
XLOC_015912 BX284666.1 non-coding downstream 344288 49855746 ~ 49856793 (+)
XLOC_015915 BX927101.1 non-coding downstream 691180 50202638 ~ 50203295 (+)
XLOC_015916 NA non-coding downstream 762620 50274078 ~ 50279241 (+)
XLOC_015919 CABZ01053213.1 non-coding downstream 1078874 50590332 ~ 50590448 (+)

Expression


Co-expression Network