XLOC_015913 (rpl37)


Basic Information

Item Value
gene id XLOC_015913
gene name rpl37
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 49860722 ~ 49871576 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031573
GTGCGTCTGACGTCACGCGTCGCACGTGTTTCTGTTGTCAAAAATGCAGATCCCAAATAAACATGCGATCTTGCTAAATTAATAGTTGGTAACATTACAGAAGATTGTACTGTATCATTTACAATATGATAAATCGCTTGGGGATTTCGCACGTGTGGTGCTCTTTTTTTCTAAAGATTTGATTCATTGACGTTTGAATAAAGTTTTTCAAAGAGGAAAATGGCCGCGTCCATAATGCGCCGCTCGTAGCgtctttataaaaacaataataatccatGTGCGGGGTTGTCCAGCAGCTAAAGTAAGGATGAGCCGCTCAACCAGCCTCTTGCAGCAGATGACCATCTTCATGACCGTAGTGACTGGCGGTGGTTGTGCTACCATGTACTACCTCATGCAGAAAAACTTTGCTAAATCAGAGTACTACCGTCAGGCTCTTGAGCAGCTGAACAGTAACTCCACAGCCATGGCCAGTCTGGGAGCTCCTCCTCTGAAAATACACAACATCCATCTGTCGGACCGACACAACCGCATTGACCACAGCAGCGCTCAGCTCAAGATTCCAGTCACCGGGTCCAAGACTGGAGGTTACCTTTACACAACATCCACCAGAGACTCTCTGACGAACAGATGGCACCTGCAGCAGGTCGTCCTGAAGCTCAGAAAAGGAGACACCGTTGAGATTTTCAACAACACACAATCTGAAGAGTGACTTCAGAAACAACATGATACAGGGAAAACAAATGCTAATGGACTCTTCctgatatgtttttctttttagtttttattgcGAATTGGGAAGAAATGTTAACAGCCCTTCatagaataaaaacaatattgaCATTTTGTTCAAAGACACCTAATAAATCCAGAGAGACTTATCCAGA
>TCONS_00031574
TAATGCGCCGCTCGTAGCgtctttataaaaacaataataatccatGTGCGGGGTTGTCCAGCAGCTAAAGTAAGGATGAGCCGCTCAACCAGCCTCTTGCAGCAGATGACCATCTTCATGACCGTAGTGACTGGCGGTGGTTGTGCTACCATGTACTACCTCATGCAGAAAAACTTTGCTAAATCAGAGTACTACCGTCAGGCTCTTGAGCAGCTGAACAGTAACTCCACAGCCATGGCCAGTCTGGGAGCTCCTCCTCTGAAAATACACAACATCCATCTGTCGGACCGACACAACCGCATTGACCACAGCAGCGCTCAGGTCAGCAGATCagactaaactgaactaaataaaCCAAACTAATCTAAACtgagggcgtcacggtggtgcagtgggtagcacctcacagcaagaaggtcactggtttgagtctcggctggatcagttggcatttctgtgtggagtttgcatgttctccctgtgtttgatgTCGgttttcatccgggtgctccggtttcccccacagtccaaagacatgcggtataggtgaactgggtgagctaaattgaccgtagtgtatgtgtgcgaatgaatgagagtgtatgggtgtttcccagtgataggttgcagctggaagggcatctgctgcataaaacgtgctggataagttggtgttcattctgcagtggcaacccctgattaataaagggactaagccgaaaataaaatgaatgaatgaatgtttcatatAAGACAGATTTTACAGATGTGAAATCCAAATC
>TCONS_00031575
GGTTGTCCAGCAGCTAAAGTAAGGATGAGCCGCTCAACCAGCCTCTTGCAGCAGATGACCATCTTCATGACCGTAGTGACTGGCGGTGGTTGTGCTACCATGTACTACCTCATGCAGAAAAACTTTGCTAAATCAGAGTACTACCGTCAGGCTCTTGAGCAGCTGAACAGTAACTCCACAGCCATGGCCAGTCTGGGAGCTCCTCCTCTGAAAATACACAACATCCATCTGTCGGACCGACACAACCGCATTGACCACAGCAGCGCTCAGCTCAAGATTCCAGTCACCGGGTCCAAGACTGGAGGTTACCTTTACACAACATCCACCAGAGACTCTCTGACGAACAGATGGCACCTGCAGCAGGTCGTCCTGAAGCTCAGAAAAGGAGACACCGTTGAGATTTTCAACAACACACAATCTGAAGAGTGACTTCAGAAACAACATGATACAGGGAAAACAAATGCTAATGGACTCTTCctgatatgtttttctttttagtttttattgcGAATTGGGAAGAAATGTTAACAGCCCTTCatagaataaaaacaatattgaCATTTTGTTCAAAGACACCTAATAAATCCAGAGAGACTTATCCAGAGAGTGGTCTCTTTTTTCCCATGGCTGTATGTATGAAGACAAAATGTATAGGCCTCctgtaaaaatgattatttttgaaagatttcccaaataatatttatttcaacacattattaaacagtatatttctaataactaattactttttgATGAAAGTATGTTATggctaagagagagagagaaagagagagagttttaattttattgccatttcagcttctatggctatgtcatggcaaaaaaaaaaaatcaaggttaccacattttataaataccactttactatattttaaaaaaaagtcctaataattaaaagtcattaccagaaataaataatacacaaggtaaaatacataaataataatgataatatattagataaaaatctaaaacagttttttaaggtTTCCATTTGATAAAAATTCTACAATTTTAGATggattcacatttttaaaaatttcactTAAAGTCTCTTAAGATAAAAATTGTTTGAGAACATTAAAAATGGAGCTTTCCACAAGACAATACTTTACAGTTTATGTTAcggctaaagtttatttatttatttttattgctctGGCTGACGACCAACATTCAAACTTGTTACCAAGTTTCATACGTTCAACTTCTTTCGAGAGTTTGAGCTTGTAGGGGTGGCCTGCCTAttgatttgattacttttgactatgtttatgtttaggggGAAATACAAGCttcctgtatttttctttaattatttattggtaatttagttcatttactttatagattcttttgtttgttattttggcctgtggccaCCCTGAAGAGATGCTCCTTTAAAATTACTACTTTTTTCCATAATAAATTTATTCAATTACTCACAACAGTGTccgagtttggttgtcgaccgaaaGGGATCTTTTgcattaagttttgttttgtttgggaaatccaccaccccagcacatttgtttttccatttattatgcccatgttgttttcccctagacttggggagtaatatttttgttgttattttgcaagatgcgAGTATTCAGATCAAAGTGCAATACATATATattgttgaagtcaaaattattagccctcacgTGACACtcgttttcaaatatttcccaaatgatgtttaacagtgcaaggaatttttcacagtatgttctATAATATTTAATCTTCTGAaaaaaagtcctatttgttttattttgcctagaataaaagcagttttaaaaaaattataataattttaaggtcaatattattagcccccttaagcaatatgttttaatgaataaaactttctccaaaagaaaaacataataggaaatacagtgaaataattccttgctctgttaaacatcatttgggaaatattaaaagaatttaaatttctAACAATTTTACTCACAGATAAGCAATAGTATGATTAATTCAGGCAGAGTAGAATAGACCATttcgagggatgtaaacaaaaacaatggtctcaacatatttcctgttttacatttttaatttctattccTTCCGAGAatacaaaaagagccacatattgataatgttatgatagctgttttaacattaagttatgattaaattgtcttttttgctacattattaaatagtttgataagcaggaaatgttcatgggccaacgACATGACCACATTTAAATGGTCAAtaacagtggtgtccaaactcaggcctggacggccggtgtcctgcatattttagttctaacctcaattaaacacacctgaactagctaatcaagctctttctaggtatactagaaactttcagggaggtgtgttgaaggaagttggagctaaactatgcaggacaccggccctccaggaccaggtttggacacccctggtctataacattcattcattcatttccttttcggcctagtcccttttttaatcagggatcgccacagtggaatgaactgccaattttctcagcatatgttttacactgcggatgaaATTAGAAAAAGTAGAACACTGTTTAGCGGTACTAAAATAAACAATGCTAGTCTTGGACCATGTGATTAGTGCGGTATCTTTGTAGTTACTAAACCCTACCAGCGGGTGTCAGTAAAACATTATCACTCAATAACCTCAGAAAACTGCAATCCCTTGTTTGTcattactaaaataaatacaaataatttgtttttgtaagAAATGTTAAGAGAtgcgataaaaaaaatattttaaaacaagtgCATTTTCAGAGATCTTCATGAGAAAACAGATTTACAGACAGGTTTCCATGCAAAAtttggtaacgctttcttttacaacccgcaaagtaccgcgtaagtacagtgaaattacactgtacttttctgtacgtactgtgtaagtataatgaacgtatgtgtaggtataagggaacaaaccgtaatgcttgggtaaaaagggggtaacaaccagatgttcatcacgaaaattaccgcgtaagtacagtgaaataacggtgtacttttctgtacctatagtgtaagtataaataacgtttacgtaagtataagggaacaaactgtaatgctcgggtaataaggggataacaaccagatatttagcataaaaggtaccgcgtaagtacagtgaaataaggttgtacttttctttaaattgcaaaagaacaaaccataatgtttgcgtaaaaggggagtaacaataagatatccatcacgcaaagaagtatattaagtttacgatgtacatttcttcaagtattgtatacatataaagaattatgcaaggatggtgacaacctattgctatctgcaaatgtactgtatatgcacctgcgtgagtacattagtactcttattcagtgcttgggttttatatggggtgtttaatgaataaaaggtttacaacctgtgaaattatgaacccttattgtatactgtatgtattttaaatcttcaattcaatataaaatatatttccatacactacttaccttatgtttactcgtcgatctcaccaaagccatcaatgtctccataactcactatcaacaaataactttgcatgacataggcctaccgtcagggttcaatgcagattaaaacaggctcgcatctttactgctgttgcacaggggggctaactgttgcatttcagtaaatgtatagctgatgctttatagaaaaatctagtaatttggtcttcaatcaataaaaactgctgctgtagtttactctgttcttagtgttcaagtatacactagtatgttaaagttcagcttcttccctctttgttccctgtagttaaagggtaaatacagtatttgttccctccttgttccctgtacttacagggtaaataccacatttgagggttgtaaattaaagtgaagctttgttcctcccttgttacctgtacttacagggtaaataccacatttgagggttgtaaattaaagtgaagctttgttcctctcttgttacctccttgttccctgtacttacagggtaaataccacatttgagggttgtaaattaaagtgaagctttgttcctcccttgttacctgtacttacagggtaaataccacatttgagggttgtaaattaaagtgaagctttgttcctctcttgttacctccttgttccctgtacttacagggtaaataccacatttgagggttgtaaattaaagtgaagctttgttcctctcttgttacctccttgttccctgtacttacagggtaaataccacatttgagggttgtaaattaaagtgaagctttgttcctctcttgttacctgtagttaaagggtaaatacaacatttgttccccccttgttccctttagtttacaatgtaaaatcttaaaggcagtgaaataaatatacaaacacacaatatatttcttctttactttgtaacctttattttaataaataagcattttaaaagacttcatattaatcaaacattgtcttgtctatcattgcctatactcattcattttctcttcggctttgtccttttgttaatctggggtcgccacagtggaataaaccaccatcttatccagcatatgttttacgcagtggatgcccttccagctgcaacccatctctgggaaacatccatacacactcactcacacgcattcactacggacaatttggtctacccaattcacctgtaccgcatgtctttggactgtgagggaaaccggagcacccggaggaatcccacgcgaacgcagggagaactccatgcagaaaccttcttgatgtgaggaaacagcactacctactgtgccaccgtgttgccacccagctgcaacccatcactgggtaacatccatacatactcattcacacacatacactacggacaattttagcttacccaatgtcaccacatatttttggacttgtgggagcacccggaggaaacccacgctaacatggggagaacatgcaaactccacacagaaatgccaactgacccagccgaggctcgaaccagcgaccttcttgctgtgaggcgattgtgctacccactgcgcctgcctatactcaaacagcaaaataacacattatttccttccccctttttttctggcatctcttgcttggcttcctcttctgctcttctcagcttccactgaggactctgatggtgagtggctgatgaaatcccatgggtcttgctgctctgcatttatataaaatatataaacagacagaaaggcttttagtaagctatagacatgtttattttcctgtttaatgtgtgtgtagtggttgtcca

Function

symbol description
rpl37 Predicted to enable metal ion binding activity and rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial cytochrome c oxidase assembly and mitochondrial respiratory chain complex I assembly. Predicted to act upstream of or within translation. Predicted to be located in membrane and ribosome. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL37 (ribosomal protein L37).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0032981 mitochondrial respiratory chain complex I assembly biological_process
GO:0033617 mitochondrial cytochrome c oxidase assembly biological_process
GO:0031305 integral component of mitochondrial inner membrane cellular_component
GO:0005840 ribosome cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0019843 rRNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-040625-39 Predicted to enable metal ion binding activity and rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial cytochrome c oxidase assembly and mitochondrial respiratory chain complex I assembly. Predicted to act upstream of or within translation. Predicted to be located in membrane and ribosome. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL37 (ribosomal protein L37).

Ensembl:

ensembl_id ENSDARG00000076360

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031573 False 887 mRNA 0.43 5 49860722 49866788
TCONS_00031574 False 782 lncRNA 0.47 3 49860954 49865028
TCONS_00031575 True 5392 mRNA 0.37 4 49864219 49871576

Neighbor

gene id symbol gene type direction distance location
XLOC_015912 BX284666.1 coding upstream 3929 49855746 ~ 49856793 (+)
XLOC_015911 wdr48b coding upstream 26670 49805892 ~ 49834052 (+)
XLOC_015910 si:ch211-190k17.19 coding upstream 59711 49799470 ~ 49801011 (+)
XLOC_015909 BX323861.3 coding upstream 112663 49667767 ~ 49748059 (+)
XLOC_015908 BX323861.1 coding upstream 212733 49646958 ~ 49647989 (+)
XLOC_015914 zcchc2 coding downstream 190589 50062165 ~ 50099982 (+)
XLOC_015915 BX927101.1 coding downstream 331062 50202638 ~ 50203295 (+)
XLOC_015916 NA coding downstream 402502 50274078 ~ 50279241 (+)
XLOC_015917 viml coding downstream 519755 50391331 ~ 50409763 (+)
XLOC_015918 PDE1C coding downstream 606203 50477779 ~ 50576188 (+)
XLOC_015900 NA non-coding upstream 1048042 48807465 ~ 48812680 (+)
XLOC_015896 NA non-coding upstream 1473330 48380910 ~ 48387392 (+)
XLOC_015895 NA non-coding upstream 1563272 48297052 ~ 48297450 (+)
XLOC_015919 CABZ01053213.1 non-coding downstream 718756 50590332 ~ 50590448 (+)
XLOC_015920 NA non-coding downstream 736488 50608064 ~ 50629155 (+)
XLOC_015921 NA non-coding downstream 820308 50691884 ~ 50692346 (+)

Expression


Co-expression Network