XLOC_015914 (zcchc2)


Basic Information

Item Value
gene id XLOC_015914
gene name zcchc2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 50062165 ~ 50099982 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031576
atgatgaagatgaagctGCGAGCGGCGGGAGGAGAAAATTACCGATGCGACTTGAATTCCGTTAACGGAGCGGATCGGGAGAGCGGCATCGGGGCGGCTCAGCTCGATAAGGAGGCGGTTTTTGAGTGGTTCGGGCTACAGTTGAACCCGGCCGGACGCGTGGAGTTGCTTTGCGGGCTTCTGCATATGTGTCAGCCGTTAGAGCTGCGTTTCCTCGGCGCCTGTCTAGAGGATCTGGCCCGGAGAGATTTCACCGTCCTGCGGGACTTCGAGATCCGGGCCAACAGCCCCGCCGATTTGGAAGGGCTGGTAGACGTAAGCGATCCCGTTGTGTTGTCTAAACTACTCGTGTATTTGTCTCTGCTCGGCTCCAAGAGCAGGGAATGCGCCTGTATTCTCTTCAGGACGTTGAGTCGGATGGACGTGGGTATGTACGGGGCTCTACCGGAGCCGGAGACGGTGGATCAGCTGCGGCTGCTCTTCACCATGGGCTCGCTACACCCGGCGTTCAGTTTCTATCAGCGGGAAGAGCTGCGAGCCCAGTTGGACAGACTCCAAAGATGGAGCCAGTTTTCCAGACCGGGGTTTCTCTGTCCTCACCGCGAGGATGATGGAGACTGGACTCTTTGCAGCAATGCAAACCCACACCTCAGCAGCACATCACAGCGTGAAGGTATCACACCTCTGTATTTCAGCACAAAGACACACTGATACAAAAACTGTTGCAGAATTATAATGATGGTGTCCTTTTGATGTTGCAGTGGTGCACATTGAGAAGATCATTTTGAAGGAGATTTCTGTGGGAGGAGATGGCAGGCATTACAGTTTCGAGGTAAGTTTAAAACCCCTCAGAGACAGTTTCAACACTGACGGTTTATAAAAGAAGCTTAGAGAGCTTCAGGATTGTGGACTTTATTTAGATTGATGTGTACCTGTATTTGTTTGGCTTGCCAGTTAGGGAGTCTTTTCAGGAAGCATGGGAAGTTGGGCTGTAATACAAAACCAAACTCTCCACTATTATTACTTATTACTacactattattgttattgtctTTCCAGAATTTAGCAGACTAAAATGATTGATTATGTGGtgaatttttatgtttaaatactGTTTTTGAATCTAAATCTATGGGGATGGCACTCTGTGGTACGGCGTGAACTTGTACCGTGTCTCATCTGTCTGATATATGCAGGAAATTtgcatcaattaaaaaaatgtgaacacaaca
>TCONS_00031577
GTGGTTCGGGCTACAGTTGAACCCGGCCGGACGCGTGGAGTTGCTTTGCGGGCTTCTGCATATGTGTCAGCCGTTAGAGCTGCGTTTCCTCGGCGCCTGTCTAGAGGATCTGGCCCGGAGAGATTTCACCGTCCTGCGGGACTTCGAGATCCGGGCCAACAGCCCCGCCGATTTGGAAGGGCTGGTAGACGTAAGCGATCCCGTTGTGTTGTCTAAACTACTCGTGTATTTGTCTCTGCTCGGCTCCAAGAGCAGGGAATGCGCCTGTATTCTCTTCAGGACGTTGAGTCGGATGGACGTGGGTATGTACGGGGCTCTACCGGAGCCGGAGACGGTGGATCAGCTGCGGCTGCTCTTCACCATGGGCTCGCTACACCCGGCGTTCAGTTTCTATCAGCGGGAAGAGCTGCGAGCCCAGTTGGACAGACTCCAAAGATGGAGCCAGTTTTCCAGACCGGGGTTTCTCTGTCCTCACCGCGAGGATGATGGAGACTGGACTCTTTGCAGCAATGCAAACCCACACCTCAGCAGCACATCACAGCGTGAAGTGGTGCACATTGAGAAGATCATTTTGAAGGAGATTTCTGTGGGAGGAGATGGCAGGCATTACAGTTTCGAGGTGAAATGGTCAGACTCTTCATCATCTGCTGTCACTAAAAGTCATCGCGAGTTGGAGGATTTTCTGTTAAAGCTTCCTAAGGAGCAGAGTCCTGGTGGCTTTGAGAAGGGCATCGTCAAATTACTCAGTCGTGGCGATCAATGTGAATCCAGAGACCTGGAGAGAAACCTCAGGGAGAAATTCCTGTCTTTATCACAGGATGTCCTTAGGAGATGTGACATTTCCAGGTTCTTCCTGTCTGATGCGTCTGTACTGCCCTGTAGCCACTGTACCAGTGCGCCCGTAGCCAGAATCCATCAGCCTGAACGAGGTTTTTCTGAGGACTGCTCTGAGACTTCCAGCCTGGAGgaggATGTGGAGGCATACAACATCAGAGCTGCAGGATTAAGTAATCAGCGCTCTGAATGCCAGAGAAGAGGAAACTGTGAGCAGAATGGAGAGAGAGTTTGGAAGAAAGAGAATGAATTGGAACAGAACTGCACCAATGACAGAAGAATCTTCACAGCTGGACAGAAGAACAAAGGACGATCTGCTGGAAAACGAGACAGAGTCCGGCGAGTGACCGCTGTCAAGACTTCTAATGGGATCCAGAAACCTTCTGCCGCACTGATGATCAACCAGGCAGCTTGCAAAGATGCAGGAAGGGACCGGTATGGGGACACGTCATCAGAGAGCTCAAACTCTGTGCCATCCAGCCCTGTTCACCAGAAGAGCCTGGAGGACCAAGATACTGAGAGTCAGTCTGATAACTCGGCCCAGGAGCCAACTGAAAAGACTCAACCCACCAAAGGCGTTGGCGGCAAAGCAGTTGCCATGGTGAATCCACTAGTTGCCGAACCCCAGAATGTCCCGCAGACGCCTTCAGTGGTAGAACTGGCACTGACCGCATGCCTCCCCTACTCCCTTCAGTACAACACCACCCAGAGGGATGCTGGCCAGGGTCAGATAACCATCACTATCCCGTTGGCCCAAAACCCAGGAACATCATCATCCGGCACTCAGCCACAGCAGCAGCCACCGCTTGGGGCGTTCAGTGTCCTCTCCGCTGGTCAGTGTCCTCTGCAGCCTGCCAACACCACCACGGCCAATAGTGCCATCAAAACAAACCCAAAGGCCTCCATTACTGCCAGTGGCCCCTCCAGCTCATGCAGTGGTCAAGTACCCATAGCTTGTCCTACAAGTGTACCCACACACACCCCAGGCCCAGCGCCCATGCCTGCTCCTGCGGTCACACACAGCACTGCTCCGAGCGATTCTTTGTCCTACATCAACAGCTCCAGCTTACCAGTAACACCATTGGCTAGTGGGACGCAACAAGCAGGAGGATGCAACACCTGCGGCTGCCGGGGCACCTGTGGAGGCAATGGTGCCCATCAAACACACAGCTACTTCCTGCCACCCCAACCTGCCCGACAGATGTTTGGGCCGCCGCCGCCGCCTTTCTTCCACCTCCCTCCATCTCTATGCAATAGTTTCGCAGCTCAGGGTCACCAAAATAACGGGACGCCTCTGCCCTTCTATGCCCACTCGGGTCCTCCTGCTGCATTCCTGCACGCTCACTCTGATCACTTGCTGGCATCGCAGGCAGGATACAGTCTGCCTCAGATGACCCCCTTCCATCGCTTCTACCCACCTGTGTTTCCACCGGTCGGCCTGATGTCAGGAGGAAACAACCTGAAGAAGACCAACAACGTGTCCTGCTATAACTGCGGCATGAGTGGACATTATGCTCAAGACTGCAAGCAACCATCCATTGATGCCGGGCTGACAGGCAAGTATGCAAACAGAtactaaacctttttttttttttttttaaacatgcaggTCGAAACAAAGAAAGATTTTTAATTTTGAGCATCAAAACAGTTGACATTTGTAAAATGTCTTTTTGTCGTCTCAGCAATAATATAATGACTGCTATAAAATATGTACTTTGATTTAACGTAGACTAACCATTTTCCGTAAACAACGATGTTCTATACAGTTTACCTTTTAACGCCAATCTCTGAATAAAAACTTAGGGTGGTAGACACCCAATA
>TCONS_00031578
CACCCCAACCTGCCCGACAGATGTTTGGGCCGCCGCCGCCGCCTTTCTTCCACCTCCCTCCATCTCTATGCAATAGTTTCGCAGCTCAGGGTCACCAAAATAACGGGACGCCTCTGCCCTTCTATGCCCACTCGGGTCCTCCTGCTGCATTCCTGCACGCTCACTCTGATCACTTGCTGGCATCGCAGGCAGGATACAGTCTGCCTCAGATGACCCCCTTCCATCGCTTCTACCCACCTGTGTTTCCACCGGTCGGCCTGATGTCAGGAGGAAACAACCTGAAGAAGACCAACAACGTGTCCTGCTATAACTGCGGCATGAGTGGACATTATGCTCAAGACTGCAAGCAACCATCCATTGATGCCGGGCTGACAGGTGGTTACCGGCTGAAGTATGTTGCCCCAAACTCCTCAGAAGCACTAGATAAAAATGATTGACATCAAGAAGGGGACCAAAGGCCTGTCAGTCAGCGATTCCAGAGACCCTTCAGACTTTGTCCAAGCATCCTCGTCCAGAGAGGTTTGCTTTAAAAAGAAGCAATGCCAACTACACCGTTGCTAACTTAATGGCTTTTCTCTTAGGATTTAAATTATCTTAATGTTATAGTTTAAAGAAATAGGatgggtttgtttttgttttaggctCAAAATAACTAGTTTATTGTTGTCAGAAGGAATTTTTATATATAAGCTGACGTTCTCATTAGCGGAGTTGATGAGAAAATTAAGAAACTTGAGTCCTTCAGTGCAGTATTTTTGGTTTCTGACACGGGTGAATCTTTATAGGCTTTTTAT

Function

symbol description
zcchc2 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZCCHC2 (zinc finger CCHC-type containing 2).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-269 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZCCHC2 (zinc finger CCHC-type containing 2).

Ensembl:

ensembl_id ENSDARG00000067950

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031576 False 1232 mRNA 0.48 2 50062165 50068775
TCONS_00031577 False 2658 mRNA 0.52 13 50062290 50095515
TCONS_00031578 True 794 mRNA 0.47 2 50094873 50099982

Neighbor

gene id symbol gene type direction distance location
XLOC_015913 rpl37 coding upstream 190589 49860722 ~ 49871576 (+)
XLOC_015912 BX284666.1 coding upstream 205372 49855746 ~ 49856793 (+)
XLOC_015911 wdr48b coding upstream 228113 49805892 ~ 49834052 (+)
XLOC_015910 si:ch211-190k17.19 coding upstream 261154 49799470 ~ 49801011 (+)
XLOC_015909 BX323861.3 coding upstream 314106 49667767 ~ 49748059 (+)
XLOC_015915 BX927101.1 coding downstream 102656 50202638 ~ 50203295 (+)
XLOC_015916 NA coding downstream 174096 50274078 ~ 50279241 (+)
XLOC_015917 viml coding downstream 291349 50391331 ~ 50409763 (+)
XLOC_015918 PDE1C coding downstream 377797 50477779 ~ 50576188 (+)
XLOC_015919 CABZ01053213.1 coding downstream 490350 50590332 ~ 50590448 (+)
XLOC_015908 BX323861.1 non-coding upstream 414176 49646958 ~ 49647989 (+)
XLOC_015900 NA non-coding upstream 1249485 48807465 ~ 48812680 (+)
XLOC_015896 NA non-coding upstream 1674773 48380910 ~ 48387392 (+)
XLOC_015895 NA non-coding upstream 1764715 48297052 ~ 48297450 (+)
XLOC_015920 NA non-coding downstream 508082 50608064 ~ 50629155 (+)
XLOC_015921 NA non-coding downstream 591902 50691884 ~ 50692346 (+)

Expression


Co-expression Network