XLOC_015916


Basic Information

Item Value
gene id XLOC_015916
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 50274078 ~ 50279241 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033684
GTCATTCTCTTCACAACCCTCAACGAGAAATGACATTGCATCataaacaacatgagcatttaaaaaaaaaaggaacaagaAACAATCGACtgattacattataaataaaaagccACATAAAGCAATTCTGATGTGACAAAACcttaataaatatgcaatttaattcattttaaaagacCTAACAACAGATTGGTTATGCACAATTTTAAAACAACCCCAAATATAAGCAAAGCAGCATTACTGTGCTTTATCATAAACCAACTTTAGTAATCTATCTGATGGCTGAATAACACTCTTGTTAGTGGATTCATGTGAGCAAAGACGCTTAAAAGACCATATTAATAAACACCCCCAAAAATGACAGAAATGCTTCTTTACGTAATTCAGACAtagttaagaaataaaaaaaaacaagcacaatGAGGACACTATTCGAAATGGTTTGTACATAAATTTGTGCTGCTGCGGCTGATTTTAAACTAACACAACTTCTCCTTAATTATGGTCTTCAAACCTATCACAAAGTCCATGCTTGGCCAGAAGAAGCCTTCGAGGCACATTAAAAGACATCGGAGCAAATGAACCAGTCGTGATCATTTACTACTGAACCATCCGGAGCTTCCTTGTTTTAAAAATGCCCCTATTGTGCTCACGTAGTGTGTAATGTAGGGCTGCTTATAAATGTAAAAGGTCAGCAACTTTTCAAATATAAATGAACTTGTAATTCACAATCACTTCTTTGTTTTGTAGACAACATGAAAGGAATCTTCAGTAATTCCTACACAAGTTTATGGCAAATTTGCATAATGCCAGTCTGTTGTCTTCATTGGCTGCCTGTTATATTGTCTTATTTAACTCTGAAACATTGCTGCACATGCTAAAATACACTGGAAGTGTTGAGTTTGGataaaaaaacatgctgttttctgCACTGTGAAAGCAAATCCACTTGTTCCACCCATAACAGCAGAAGAATTCTCAAAAAGGCGATTTTTAGATAGACAGGATCATTGAAGCAACCATTTCAGGCACTAAGGTCATGTCcatttttctctttgttttggCCAAGAAATGAAAACGTATATTTTTAAAAACGCGGACATTGTGTTGTGGTGTGAACTGTGAAAATGGAGGCATTTGAAAATGATGACAGTGATGTGATGAAGTCATGTGATCAATTCGGCTAACATGGTGGATGACATTATAAAGCAGATGTTTTGGATGCTGTCCGTTTTGACAGCTTTATTAAAGAATAATGTCAGTTTGTACAGTACATGCTCCATATTTTTTCTGTTCAAATGTTTACTGGGAGCTGTTGTTCAGCGGTGGACAGTTTGACGAGGTGTTTCAAAGAgatggaaagtaaataaatagctgGCAGATATAATAGCAGGTAAAAGCGTGTTATGACTATTCACATGGGCAGTTCatgaatgaaagcattttcaGTTGTTTAAAAATGGATGATCGAAAGAATTAAAATGATAGCGTGGACATGGAAAGTTTTAGCATTTCAAATTTATCCAGACTAGAGTAGACGTAGCCAGGGGTGTCGCTAGAGGGGGAgttaggatgattctaagggcTCACCTACTTTTGGGGCCACCAAAGTTACTATTAAGGGAAcccaacaacccccccccccccccccccccaaaccccaGTCTTCAGTTTTGTCCACCACATCACCCCTCCCCCGCTGTTCTTCACTTTCGTTCTTGACACCACCCAGCCCCCTCCCCTTTTCACTTTCATCTGCGACAATGTTTCACATAAGACTTAGCCTAAGAAAAGAGCTGTGCATAATAATTGGAaaagagtatttttttttgttttatttactcttAAACACTATAACTGAAACCTGGAAGAGTGGTTTTGCGGCTCAAAGGATGCTTTTTTCTGCAATGTGAGAGCAAGGccaaattctatttttgtacccctactccTTCTtgccccttggcccttaaaaccgagtgtgaaggggaagggcttcaaaaatTTCCCCtcaagaattgggacagcactaaagCACCTGCACACGTTATCATATGTCAccgtgatctcttgcttcatatgagatcagacgatcgcgactgctgtagttattccagatgtgttattttttggtatttatcttcaagaaatcactaaaagcatatattatgttatcataaccatATAATGTGACAAGAAGatcgtaatactgtgcatttaacacagtggccatattcatttatgtaaacaaaccaaaaacagccttaccattatagcagacactgtaaaaagctcattcacagccactagacattactgacagggtattccagtgtcatcgagtgtcagaatgttgtgggactgctatacaggagttattgttatggattatagattgcgaaatttagcagtttttatttttttaagcatgacagtaCAACACATACACagttataaatattaaaacatgtgtttgtttgtagtaaaaatacaaatttgtggatatccttacttccgggtgtaactgtctgccgttgtggctgatgtattctgggaaattttcttaccccttggtttcaagcgTGGTTctgaaaatctttgttcgaagggctattcacccctttcCCCTTCGCCTTcgagctaaagagaattgggacacccctaacCCTTGACGtgaacgcgcaaaacgaggggtaggggtaaggggaagggctaaggggtagaatagGGATTGGGCCCAAATCTACTTTCTCCaccaatcaaaacagacttgAGCAGTcttgaccaatcagagaaaagCAGGCTCTCAAAAATGCAGGTTTTAGAGACACCGGATCCTTGAACCAACTATTTCAGACACTAAGAAAAGAGGTGGTGTTGTACATATTATTGGTAAAAAGTATATGTTTTGTCCTATTTAACTCCTAAACACTGTAACTGTAGCTGAGACCTAAACAAGTTAAGTTCTTGAcccaaaaatatgttattttctGCACTGGGAGGGCAAATCTACTCTTTCCaccaatcacaacaaactggagcagtcatctgaccaatcagagcaaagctgGCTCTCAAAAAGGCGGGGTTTAGAGAGGCCAGATCTTTGAACCAACCATTTCATACGCTGTAGCTCTGCATTTAATTTGAGTTTATTGTCATCTTTAAGTCTCAAACACTGTAACTATAACTGCAACCAATAGGAGGTTTTTATGTCAaaaagatgttgttttttttgtgtgttgcaCATAAAACAGGAGGAGAACTCATGCTCAAACTAGGATGGTAAAACTACCGTCATTGTTTATATCACTGTGCTTACAAGTGACAAAGAATAGCTCAAATTCAGATATATGGTAATCTGAATATGGTTTCAGACATGCAATGTAAGttatcaaccaatcacaacagactggaccagtcatctgaccaatcagagcaaagcagGCTCTCAAAAAAGGCAGGGTTTAGAGAGACCGGATCCCTGAACCAACCATTACAGACACTAAAAAAGAGCTGGAGCAGTGCATATTATAGGATAAGcgtttaattttagatttttttgttatatttaagtCTCAAACACTGTATCTATAGCTGCAACCTATAAAAGTTTAGGTTTTAATATCAAAAAGATGTTGTTTTCTGCACTGTGAGAGCAAATCTACTTGGTTGTGCTTAAAAAAGGagaactcatgcacagaagaggATGTTAAAACTAATGACATTGTTTATAACACTGTGTTTACAAGTGAAGAGGAGGAGCTCAAATTCACAGCATTTGGTTTTGGACACGCAATGTAAGtgatcaaccaatcacaacaaactGAACCTGTcatatgaccaatcagagcagagcaggcTCTGAGAAAGGCGAGGTTTAGAGAGACTGGATCCTTGAACCAACCCTTTCAGACACTACAAAAAGTGTTGGTaatgaaaaatgtgttttttttaacctcGGATTGACGAAATAAGAAAAACTATAAACCCTAACAGCAAAATAGGGGCACTTCAAGAACATTCACCCCCTCTAAACTGTCCGTCTGCATCATGTTATCCGTAGAGATTGAACAAGCACTTATGGAGAAACAGATAAATAACACTGAATTCTGGCAACTATAAAGAACATGAGATACAAAAGTGCTGCATTGAACATCGATGGGTGATTCAGAAACGCCATTGGCTGATTTCCATgctacaatatattattattgtccTGAAGATGCTGACAACGAAACGCTTAAATACAATCAAACGTCATTATCGGAAAACATAAGTATGCATTCTGTACACATTCCGCTTTGTTCTATTGGAGTATTCGCTGCATTCGTGATCGCCGAacacacatctttttttttaatccgaTCAGAAATATTGCAATGATAAAAATGCATCAGTTGTTGTTTAAAACTGTCATCATGTGTGCATGGGATGAATGGGATCTTACAGAAGTCCTTGTGCTGTACTCACTTACAAAATAATTACAGAACAGACATGCCAGACGTCGCCAAGTGTCCGTTTCACATGGGCTGCTGTCAGAGAGTGAAGCCCCGCCCCTAGGGGGTGTGGCTAAATGAACCACTCCTTCTTGCTCTCGTCGATGGTCTCTGTGAAGGCGGGGTCATTGACGATGATGGCAGCATCGGCGCAGTCTGCAGACTCCGCCCCTTTGGCCTCATTGGTGTGGTAGGAGCCCTTGTGACGGAACATGTGACGCACCAGAAACACCAGCGTGCAGAGGATGGTGAAGATCACCACTGCGATGATGCCTGCG
>TCONS_00033685
GACATTGCATCataaacaacatgagcatttaaaaaaaaaaggaacaagaAACAATCGACtgattacattataaataaaaagccACATAAAGCAATTCTGATGTGACAAAACcttaataaatatgcaatttaattcattttaaaagacCTAACAACAGATTGGTTATGCACAATTTTAAAACAACCCCAAATATAAGCAAAGCAGCATTACTGTGCTTTATCATAAACCAACTTTAGTAATCTATCTGATGGCTGAATAACACTCTTGTTAGTGGATTCATGTGAGCAAAGACGCTTAAAAGACCATATTAATAAACACCCCCAAAAATGACAGAAATGCTTCTTTACGTAATTCAGACAtagttaagaaataaaaaaaaacaagcacaatGAGGACACTATTCGAAATGGTTTGTACATAAATTTGTGCTGCTGCGGCTGATTTTAAACTAACACAACTTCTCCTTAATTATGGTCTTCAAACCTATCACAAAGTCCATGCTTGGCCAGAAGAAGCCTTCGAGGCACATTAAAAGACATCGGAGCAAATGAACCAGTCGTGATCATTTACTACTGAACCATCCGGAGCTTCCTTGTTTTAAAAATGCCCCTATTGTGCTCACGTAGTGTGTAATGTAGGGCTGCTTATAAATGTAAAAGGTCAGCAACTTTTCAAATATAAATGAACTTGTAATTCACAATCACTTCTTTGTTTTGTAGACAACATGAAAGGAATCTTCAGTAATTCCTACACAAGTTTATGGCAAATTTGCATAATGCCAGTCTGTTGTCTTCATTGGCTGCCTGTTATATTGTCTTATTTAACTCTGAAACATTGCTGCACATGCTAAAATACACTGGAAGTGTTGAGTTTGGataaaaaaacatgctgttttctgCACTGTGAAAGCAAATCCACTTGTTCCACCCATAACAGCAGAAGAATTCTCAAAAAGGCGATTTTTAGATAGACAGGATCATTGAAGCAACCATTTCAGGCACTAAGGTCATGTCcatttttctctttgttttggCCAAGAAATGAAAACGTATATTTTTAAAAACGCGGACATTGTGTTGTGGTGTGAACTGTGAAAATGGAGGCATTTGAAAATGATGACAGTGATGTGATGAAGTCATGTGATCAATTCGGCTAACATGGTGGATGACATTATAAAGCAGATGTTTTGGATGCTGTCCGTTTTGACAGCTTTATTAAAGAATAATGTCAGTTTGTACAGTACATGCTCCATATTTTTTCTGTTCAAATGTTTACTGGGAGCTGTTGTTCAGCGGTGGACAGTTTGACGAGGTGTTTCAAAGAgatggaaagtaaataaatagctgGCAGATATAATAGCAGGTAAAAGCGTGTTATGACTATTCACATGGGCAGTTCatgaatgaaagcattttcaGTTGTTTAAAAATGGATGATCGAAAGAATTAAAATGATAGCGTGGACATGGAAAGTTTTAGCATTTCAAATTTATCCAGACTAGAGTAGACGTAGCCAGGGGTGTCGCTAGAGGGGGAgttaggatgattctaagggcTCACCTACTTTTGGGGCCACCAAAGTTACTATTAAGGGAAcccaacaacccccccccccccccccccccaaaccccaGTCTTCAGTTTTGTCCACCACATCACCCCTCCCCCGCTGTTCTTCACTTTCGTTCTTGACACCACCCAGCCCCCTCCCCTTTTCACTTTCATCTGCGACAATGTTTCACATAAGACTTAGCCTAAGAAAAGAGCTGTGCATAATAATTGGAaaagagtatttttttttgttttatttactcttAAACACTATAACTGAAACCTGGAAGAGTGGTTTTGCGGCTCAAAGGATGCTTTTTTCTGCAATGTGAGAGCAAGGccaaattctatttttgtacccctactccTTCTtgccccttggcccttaaaaccgagtgtgaaggggaagggcttcaaaaatTTCCCCtcaagaattgggacagcactaaagCACCTGCACACGTTATCATATGTCAccgtgatctcttgcttcatatgagatcagacgatcgcgactgctgtagttattccagatgtgttattttttggtatttatcttcaagaaatcactaaaagcatatattatgttatcataaccatATAATGTGACAAGAAGatcgtaatactgtgcatttaacacagtggccatattcatttatgtaaacaaaccaaaaacagccttaccattatagcagacactgtaaaaagctcattcacagccactagacattactgacagggtattccagtgtcatcgagtgtcagaatgttgtgggactgctatacaggagttattgttatggattatagattgcgaaatttagcagtttttatttttttaagcatgacagtaCAACACATACACagttataaatattaaaacatgtgtttgtttgtagtaaaaatacaaatttgtggatatccttacttccgggtgtaactgtctgccgttgtggctgatgtattctgggaaattttcttaccccttggtttcaagcgTGGTTctgaaaatctttgttcgaagggctattcacccctttcCCCTTCGCCTTcgagctaaagagaattgggacacccctaacCCTTGACGtgaacgcgcaaaacgaggggtaggggtaaggggaagggctaaggggtagaatagGGATTGGGCCCAAATCTACTTTCTCCaccaatcaaaacagacttgAGCAGTcttgaccaatcagagaaaagCAGGCTCTCAAAAATGCAGGTTTTAGAGACACCGGATCCTTGAACCAACTATTTCAGACACTAAGAAAAGAGGTGGTGTTGTACATATTATTGGTAAAAAGTATATGTTTTGTCCTATTTAACTCCTAAACACTGTAACTGTAGCTGAGACCTAAACAAGTTAAGTTCTTGAcccaaaaatatgttattttctGCACTGGGAGGGCAAATCTACTCTTTCCaccaatcacaacaaactggagcagtcatctgaccaatcagagcaaagctgGCTCTCAAAAAGGCGGGGTTTAGAGAGGCCAGATCTTTGAACCAACCATTTCATACGCTGTAGCTCTGCATTTAATTTGAGTTTATTGTCATCTTTAAGTCTCAAACACTGTAACTATAACTGCAACCAATAGGAGGTTTTTATGTCAaaaagatgttgttttttttgtgtgttgcaCATAAAACAGGAGGAGAACTCATGCTCAAACTAGGATGGTAAAACTACCGTCATTGTTTATATCACTGTGCTTACAAGTGACAAAGAATAGCTCAAATTCAGATATATGGTAATCTGAATATGGTTTCAGACATGCAATGTAAGttatcaaccaatcacaacagactggaccagtcatctgaccaatcagagcaaagcagGCTCTCAAAAAAGGCAGGGTTTAGAGAGACCGGATCCCTGAACCAACCATTACAGACACTAAAAAAGAGCTGGAGCAGTGCATATTATAGGATAAGcgtttaattttagatttttttgttatatttaagtCTCAAACACTGTATCTATAGCTGCAACCTATAAAAGTTTAGGTTTTAATATCAAAAAGATGTTGTTTTCTGCACTGTGAGAGCAAATCTACTTGGTTGTGCTTAAAAAAGGagaactcatgcacagaagaggATGTTAAAACTAATGACATTGTTTATAACACTGTGTTTACAAGTGAAGAGGAGGAGCTCAAATTCACAGCATTTGGTTTTGGACACGCAATGTAAGtgatcaaccaatcacaacaaactGAACCTGTcatatgaccaatcagagcagagcaggcTCTGAGAAAGGCGAGGTTTAGAGAGACTGGATCCTTGAACCAACCCTTTCAGACACTACAAAAAGTGTTGGTaatgaaaaatgtgttttttttaacctcGGATTGACGAAATAAGAAAAACTATAAACCCTAACAGCAAAATAGGGGCACTTCAAGAACATTCACCCCCTCTAAACTGTCCGTCTGCATCATGTTATCCGTAGAGATTGAACAAGCACTTATGGAGAAACAGATAAATAACACTGAATTCTGGCAACTATAAAGAACATGAGATACAAAAGTGCTGCATTGAACATCGATGGGTGATTCAGAAACGCCATTGGCTGATTTCCATgctacaatatattattattgtccTGAAGATGCTGACAACGAAACGCTTAAATACAATCAAACGTCATTATCGGAAAACATAAGTATGCATTCTGTACACATTCCGCTTTGTTCTATTGGAGTATTCGCTGCATTCGTGATCGCCGAacacacatctttttttttaatccgaTCAGAAATATTGCAATGATAAAAATGCATCAGTTGTTGTTTAAAACTGTCATCATGTGTGCATGGGATGAATGGGATCTTACAGAAGTCCTTGTGCTGTACTCACTTACAAAATAATTACAGAACAGACATGCCAGACGTCGCCAAGTGTCCGTTTCACATGGGCTGCTGTCAGAGAGTGAAGCCCCGCCCCTAGGGGGTGTGGCTAAATGAACCACTCCTTCTTGCTCTCGTCGATGGTCTCTGTGAAGGCGGGGTCATTGACGATGATGGCAGCATCGGCGCAGTCTGCAGACTCCGCCCCTTTGGCCTCATTGGTGTGGTAGGAGCCCTTGTGACGGAACATGTGACGCACCAGAAACACCAGCGTGCAGAGGATGGTGAAGATCACCACTGCGATGATGCCTGCG

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:0036297 interstrand cross-link repair biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006996 organelle organization biological_process
GO:0007017 microtubule-based process biological_process
GO:0007049 cell cycle biological_process
GO:0007059 chromosome segregation biological_process
GO:0033554 cellular response to stress biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006281 DNA repair biological_process
GO:0016043 cellular component organization biological_process
GO:0000280 nuclear division biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005819 spindle cellular_component
GO:0005874 microtubule cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0015631 tubulin binding molecular_function
GO:0140097 catalytic activity, acting on DNA molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033684 False 4774 lncRNA 0.39 2 50274078 50279241
TCONS_00033685 True 4743 lncRNA 0.39 2 50274109 50279241

Neighbor

gene id symbol gene type direction distance location
XLOC_015915 BX927101.1 coding upstream 70783 50202638 ~ 50203295 (+)
XLOC_015914 zcchc2 coding upstream 174096 50062165 ~ 50099982 (+)
XLOC_015913 rpl37 coding upstream 402502 49860722 ~ 49871576 (+)
XLOC_015912 BX284666.1 coding upstream 417285 49855746 ~ 49856793 (+)
XLOC_015911 wdr48b coding upstream 440026 49805892 ~ 49834052 (+)
XLOC_015917 viml coding downstream 112090 50391331 ~ 50409763 (+)
XLOC_015918 PDE1C coding downstream 198538 50477779 ~ 50576188 (+)
XLOC_015919 CABZ01053213.1 coding downstream 311091 50590332 ~ 50590448 (+)
XLOC_015920 NA coding downstream 328823 50608064 ~ 50629155 (+)
XLOC_015921 NA coding downstream 412643 50691884 ~ 50692346 (+)
XLOC_015908 BX323861.1 non-coding upstream 626089 49646958 ~ 49647989 (+)
XLOC_015900 NA non-coding upstream 1461398 48807465 ~ 48812680 (+)
XLOC_015896 NA non-coding upstream 1886686 48380910 ~ 48387392 (+)
XLOC_015926 BX255896.1 non-coding downstream 792458 51071699 ~ 51079083 (+)
XLOC_015928 NA non-coding downstream 1119314 51398555 ~ 51407126 (+)

Expression


Co-expression Network