XLOC_015917 (viml)


Basic Information

Item Value
gene id XLOC_015917
gene name viml
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 50391331 ~ 50409763 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031580
GCAGACTAACCTCATCGCAGAGCTACAATAACCATAAACTCCATCATGTCTACCTCTTCATATAGAAAGAGATTCGGAGATGTGTCCCGGAGCAGCGCTTTATCCAGTCGCCAGACTTTCAGCTCCTCCGCGCGCACACGAGTGTCTTTTGGCGCGTCCTCGTCTCCGGTTATTTACGCGTCGAAAAGCGCCAAAGTCCGAAGTAGCGCTGCCATGCCACGACTTACATCCGAGACTTTGGATTTTAACCTCTCGGACGCTTTAAACACGGAATTCAAGGCGAATAGACTGAATGAAAAGGCGCAGATGCAGTCGCTGAATGACCGCTTCGCTAGTTACATCGAGAAGGTGCGCTTTCTGGAGCAGCAGAATAAGATCCTGAGCGCGGAGCTGGAGCAGCTGAGGGGTCAGAGGTCATCTCGCATCGCAGATCTCTATGAGGAGGAGATGCGGGATCTGAGGCGGCAGGTGGATCTGCTGACCACCGAGAAAACACGAGCTGAAGTGATGCGAGACAACCTGGCTGAAGATGTAGAGCGACTCAAAGAGAAACTGCAGGACGAGATGCTTCAGCGGGAAGATGCAGAGAACAGCATGAAGAGTTTCAGACAGGACGTGGACAATGCGGCTCTTGCTCGAGTGGATCTGGAGAGGAAAGTGGAGTCTCTTCAGGACGAACTGGCCTTCCTGAAAAACCTCCATGATGAGgAGCTGGCAGAGCTGCAGACTCAGATTCAGGgccagcaggtgcaggtggagatGGACATGGCTAAACCTGATCTGACAGCCGCTCTCAGAGACGTCAGACTGCAGTATGAAAACCTGGCAAGCAAAAACATACAGGAGTCAGAGGACTGGTACAAATCCAAGTTTGCAGACCTGACCGAAGCTGCTAACAGAAATAATGAAGCTCTGCGACTGGCCAAGCAGGAGACCAATGAGTACCGGCGTCAGGTGCAGGCGATCACCTGTGAACTGGACGCTCTCAGAGGAACAAACGAGTCTCTAGAGCGTCAGATGCGGGAGATGGAGGAGAACTTCAGCATGGAGTCATCTGGTTTTCAGAACACCATCGGCCGGCTGGAGGAGGACATTGGCAACATGAAGGACGAGATGGCGAGACACCTGCGTGAATACCAGGACCTGCTCAACGTCAAGATGGCGCTGGACATCGAGATCGCAACCTACAGAAAACTGCTGGAGGGAGAGGAGAGCAGAATTGCTGCTCCTCTTCCAAACTTCTCCTCCTTTAATCTGAGAGaAACAATGCTTGAGTCCAAGCTTGTTCCTGAAAACACATTTACTAAGAAAGTTCTTATTAAAACCATTGAGACCAGAGATGGCAAGGTGATCAATGAGTCGACGCAGAACCACGATGATCTGGAGTGATGAAGCTGTAAATCTCTTTGAATCCTGAATCTCAGCTCAGTCTGATGGGAAAACACAGTGTCCTGCTTCTGAGTGCCTTTACCTGCTGTAAGATGTGTAATGAGGAAACAAGAACTTTAGCAAACTGTGAATCTTTTTACTGTCTCTCAACCTGCGTTCACTTTCCACAtactgtagcatttctgagcCAACCTAATGCAGTCTGAGCAAAATGCTTGAATAAAAACAGTCTTAGAAAAGTTTGCATTTCTAATAAACCTTCATTTGCT

Function

symbol description
viml Predicted to be located in intermediate filament.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005882 intermediate filament cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1743 Predicted to be located in intermediate filament.

Ensembl:

ensembl_id ENSDARG00000044501

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031580 True 1658 mRNA 0.49 9 50391331 50409763

Neighbor

gene id symbol gene type direction distance location
XLOC_015916 NA coding upstream 112090 50274078 ~ 50279241 (+)
XLOC_015915 BX927101.1 coding upstream 188036 50202638 ~ 50203295 (+)
XLOC_015914 zcchc2 coding upstream 291349 50062165 ~ 50099982 (+)
XLOC_015913 rpl37 coding upstream 519755 49860722 ~ 49871576 (+)
XLOC_015912 BX284666.1 coding upstream 534538 49855746 ~ 49856793 (+)
XLOC_015918 PDE1C coding downstream 68016 50477779 ~ 50576188 (+)
XLOC_015919 CABZ01053213.1 coding downstream 180569 50590332 ~ 50590448 (+)
XLOC_015920 NA coding downstream 198301 50608064 ~ 50629155 (+)
XLOC_015921 NA coding downstream 282121 50691884 ~ 50692346 (+)
XLOC_015922 fyco1b coding downstream 312676 50722439 ~ 50765082 (+)
XLOC_015908 BX323861.1 non-coding upstream 743342 49646958 ~ 49647989 (+)
XLOC_015900 NA non-coding upstream 1578651 48807465 ~ 48812680 (+)
XLOC_015926 BX255896.1 non-coding downstream 661936 51071699 ~ 51079083 (+)
XLOC_015928 NA non-coding downstream 988792 51398555 ~ 51407126 (+)

Expression


Co-expression Network