XLOC_015927 (lrrc24)


Basic Information

Item Value
gene id XLOC_015927
gene name lrrc24
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 51183320 ~ 51199922 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031603
GGCTTGTCCTTCCGGGTGTCGCTGCTATAGTTTGACTGTCGAATGCGGATCCATCGGAATCAAAGAGATCCCACAAGGCATCACACAAGGGACGCAGACCATTTTTCTGCAGGACAATGCCATCGGTCAGATCCGCCAACGGGACCTGTCTGACCTGGGCCAGCTACACTACCTCTACCTGCAGAACAACAGCATCAGCACGCTGGAGCCCGGGGCCTTCAGGAGCCTCGGTCTGCTTCTGGAGCTGGCTCTCAACGGGAACCGCATTCACCTGATCACGGCAGACGTATTTCGGGGCCTCGATCACCTGCGCATCTTGTACCTTGCAGGAAACCAAATCAACAGACTGGAGGATTACACCTTCCGCGGACTGCAGCGGCTGCAGGAGCTTCATCTGCAGGAGAATGTGCTGGAGGTGCTGGGAGATCAGGCTCTGGTGGGACTGTCCTCGCTGGCTCTTCTGGACCTCAGCCGAAATAACCTGAGAACTCTGAGTCCCGCTTCACTGAAGCCTCTGGTCAGCCTGCAGGTGCTGAGAGTCACTGATAACCCATGGCGCTGCGACTGCGCTCTACACTGGCTGCGTGGCTGGATAAACGAAGAAGGTCAGAGGCTTTTAAGCTCAGCCGAGCGCCGGATGTTGTGCGCCGAACCTCCGCGGCTTTCCCACCTCAGTCTGGTCGAAGTTCCTCCAAACAGCCTTGTTTGCATCCCACCCGTGGTCCAACTAGAACCCAGCCATTTGACAGTACGTTTAGGGGAGAGTCTCCGAGTGTCCTGCCAAGCGTCCGGATACCCACAACCACAAGTCACCTGGAGGAAAGCGTCTCACGGAAAAGCCCAGCTGTCTCCCAGAGGTCTGGTGCAGGAGGTTGGGATGGATGGAGACACAAGGAATGGTGGTAGATTGGTAACAGCGAGGCCTGGAGGAAAAGGAGGACCATCGAGTCATGGACCGatcagaggaggagctgatgaCGGAGCCGACCGGGAAAATTTCGATCCTGATACAGGAAGCGGAATGCTATTTCTTAGTAACGTCACAGTGGCGCATGCGGGACGCTATGAATGTGAAGCGTGGAATCCTGGCGGTGTCGCTCGTGTGACTTTTCACCTTTCGGTGAACATGTCTTCATCGTCATCCCGCTCAGAAATCTGGCCTCGACTGCATTCCTCATCTTACTATCATCCTTCATCGGTGGATGTGAGTCAGGAGCCGCTGTATGAACTCGAAAGCATGGACTTTAATGCGCTGGGCACTGCTACGCAGACGGCAATCGCAGTGGGAATCTCTTTGCTGGCGTTGACTGCCCTTCTGCTGCTCTGCATGATCTACAGCCGACACCGACAGAGGCAGAAAGAGGAGGGCGGATATGGAGCTAGCAAAGAGGAAAGCATCCTTTATGTCAACGACTACTCTGATGGTCCCACCACATTCGCTCAGCTTGAAGAGTACCGGGATGAACGGGGCCATGAGATGTACGTGTTAAACCGCGCCAAACCGGTGCTGGCTCCGCAACCGATGTGCATCCAACAGGGATCTGCAACTCTAAAGGCCAGCGAGTGTCAGGGTGTGTTGACCCCAGGACGAGCCGGAGGGATCGGACCCCGCAGGGCTCCCGCAGAAGGGGGAGAAGCACCTCCGCTTGATCCCGAAGGGCTGTTCATGAACCAGAGCTTGCTGTTTGATACGCAGATTGCGTATGAGATTCACTGCTAA
>TCONS_00031604
aatacactaaaatacattgcctatattcactgagaaattgatttatttactgtctgctctaccaaatggttgaccatattttgactgttttaaataatggtttacacacgcacacgcacacacacacacacacacacacacacacacacacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacataaatatatatacacatacacacacacacacacacatatatatatatgtgcactATACACTATACACACATACGCACTATATGTATGTGTGCAATTTTTGTGTTCGTGTTTAACATCAGTATTTTAACATAATATTCCgtcatcgtttactcaaagtGTAAGTTTGTTCACTAATGTGGTTAACAAATCTTGCTTAAGGTGTTTTTCACATTCTTCTTTTTGTTTAAACCTTGTGCAAATGTTTTACCCTGACACTGAGAACGACATGAAATACTAATATCCACATGTGTGCTTGTAtcagtaaattaatttttaaaattaaaatttctaCATAAGCTTTACATAAAGTTTAACCACATAAAGCGTGCACAAGCTCATGAGAGTGAAAGAGAAGTGCAAACCACAGAAAAGCagtaaaaaaactgcaaaaagccaTAAAACGCTAAATTAAAAAGGACTTTTTcagcaatatgcaaattaaaCGGAGACGCTCAGCTGAAAACTGATGATGCTGCATAGAGCCAGAATGCTTTAGAAAGTGTGTTTTTATGATAGCCGCGATTATGCTCACCGTAATAACCGTATTGAAATGTTAATGCACTGTTTGCAGCGGCTGCAGGAGCTTCATCTGCAGGAGAATGTGCTGGAGGTGCTGGGAGATCAGGCTCTGGTGGGACTGTCCTCGCTGGCTCTTCTGGACCTCAGCCGAAATAACCTGAGAACTCTGAGTCCCGCTTCACTGAAGCCTCTGGTCAGCCTGCAGGTGCTGAGAGTCACTGATAACCCATGGCGCTGCGACTGCGCTCTACACTGGCTGCGTGGCTGGATAAACGAAGAAGGTCAGAGGCTTTTAAGCTCAGCCGAGCGCCGGATGTTGTGCGCCGAACCTCCGCGGCTTTCCCACCTCAGTCTGGTCGAAGTTCCTCCAAACAGCCTTGTTTGCATCCCACCCGTGGTCCAACTAGAACCCAGCCATTTGACAGTACGTTTAGGGGAGAGTCTCCGAGTGTCCTGCCAAGCGTCCGGATACCCACAACCACAAGTCACCTGGAGGAAAGCGTCTCACGGAAAAGCCCAGCTGTCTCCCAGAGGTCTGGTGCAGGAGGTTGGGATGGATGGAGACACAAGGAATGGTGGTAGATTGGTAACAGCGAGGCCTGGAGGAAAAGGAGGACCATCGAGTCATGGACCGatcagaggaggagctgatgaCGGAGCCGACCGGGAAAATTTCGATCCTGATACAGGAAGCGGAATGCTATTTCTTAGTAACGTCACAGTGGCGCATGCGGGACGCTATGAATGTGAAGCGTGGAATCCTGGCGGTGTCGCTCGTGTGACTTTTCACCTTTCGGTGAACATGTCTTCATCGTCATCCCGCTCAGAAATCTGGCCTCGACTGCATTCCTCATCTTACTATCATCCTTCATCGGTGGATGTGAGTCAGGAGCCGCTGTATGAACTCGAAAGCATGGACTTTAATGCGCTGGGCACTGCTACGCAGACGGCAATCGCAGTGGGAATCTCTTTGCTGGCGTTGACTGCCCTTCTGCTGCTCTGCATGATCTACAGCCGACACCGACAGAGGCAGAAAGAGGAGGGCGGATATGGAGCTAGCAAAGAGGAAAGCATCCTTTATGTCAACGACTACTCTGATGGTCCCACCACATTCGCTCAGCTTGAAGAGTACCGGGATGAACGGGGCCATGAGATGTACGTGTTAAACCGCGCCAAACCGGTGCTGGCTCCGCAACCGATGTGCATCCAACAGGGATCTGCAACTCTAAAGGCCAGCGAGTGTCAGGGTGTGTTGACCCCAGGACGAGCCGGAGGGATCGGACCCCGCAGGGCTCCCGCAGAAGGGGGAGAAGCACCTCCGCTTGATCCCGAAGGGCTGTTCATGAACCAGAGCTTGCTGTTTGATACGCAGATTGCGTATGAGATTCACTGCTAA

Function

symbol description
lrrc24 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in brain and retinal inner nuclear layer. Orthologous to human LRRC24 (leucine rich repeat containing 24).

GO:

id name namespace
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-496 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in brain and retinal inner nuclear layer. Orthologous to human LRRC24 (leucine rich repeat containing 24).

Ensembl:

ensembl_id ENSDARG00000101704

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031603 False 1720 mRNA 0.56 4 51183320 51199922
TCONS_00031604 True 2178 mRNA 0.46 2 51194657 51199922

Neighbor

gene id symbol gene type direction distance location
XLOC_015926 BX255896.1 coding upstream 104237 51071699 ~ 51079083 (+)
XLOC_015925 eef1da coding upstream 150432 50999477 ~ 51032888 (+)
XLOC_015924 si:ch211-249o11.5 coding upstream 209424 50967947 ~ 50973896 (+)
XLOC_015923 adcyap1r1a coding upstream 283392 50862527 ~ 50899928 (+)
XLOC_015922 fyco1b coding upstream 418238 50722439 ~ 50765082 (+)
XLOC_015928 NA coding downstream 198633 51398555 ~ 51407126 (+)
XLOC_015929 NA coding downstream 277735 51477657 ~ 51593578 (+)
XLOC_015930 NA coding downstream 368728 51568650 ~ 51570030 (+)
XLOC_015931 abhd4 coding downstream 445242 51645164 ~ 51657107 (+)
XLOC_015932 NA coding downstream 552535 51752457 ~ 51766022 (+)
XLOC_015921 NA non-coding upstream 490974 50691884 ~ 50692346 (+)
XLOC_015920 NA non-coding upstream 554165 50608064 ~ 50629155 (+)
XLOC_015919 CABZ01053213.1 non-coding upstream 592872 50590332 ~ 50590448 (+)
XLOC_015916 NA non-coding upstream 904079 50274078 ~ 50279241 (+)
XLOC_015935 NA non-coding downstream 741704 51941626 ~ 51949728 (+)

Expression


Co-expression Network