XLOC_016100


Basic Information

Item Value
gene id XLOC_016100
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 4114011 ~ 4118815 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033348
TTTTTTTCTGCCCGTTTTTAGAGCAGCAGCGACAGCTCCCCGTGTCAGCATGATGTCTATCCCTGCCTAAATGTAAGCCGTGAGTATGCTTTCTTCACCCAGCTCCACCCCTCCCGCTTCACCACTCTTGTTCCTTCTCCACAAACACTCGTTCACTATctccccccaccccaccccccgtAAGAGAAGCTGAATCAGCGAGTCGGGCATGCGATGGCTGCAGCAGCTGGAGAACTCGAGGTCATTATGGCTCTTCACACACAGGAGAGAAGAAAGAGGGAGGAGCAGAGAGCGGAGGAAACTGAGCTGACAGGTAATATATGCTCCCCGTGCCTTCCTCCCTCCGGACGGGAGTTTGCCCCCCATGCCGGCCGGTCCGCACTGACGtctctgcttttttttcttctgcgtTCGGATGCACTGGGGGTTAAGCGCGTGGCCGGTCAGCCGCGGTGTGCGGCATGGTCGGTGAAAGGGAGTGGAATTTACAGCTCTGCAGCAGCATGAGGGGGGGAAACTACTTCTATGGGAACACCTCAGGATATTGCTGGTCAGGCAGCAGGCTGCTGCAGCACAGCACTCTGTGGTTCATTACCTCCTCGTGGCTGCAGCGCCGAAGACATCTCAAATATGGACTGAAACTCACTTCCCCGAAACGTCTTTTATTTGGGATCCTTTGACTCGGAGGCACTTACAGATGGAATACAACTCGGGATGGTTACACACTTTGCCAACACTCATTCCTCTGGTGGTCGGCTCAAATTACTGGAACCATATTTGGTGTTTTAAGCTTGTTTCCGATTCAGCAGGGGGACAGGTGCGACTAGCCAAGGAAGGGACGTGGTGTCACGGTGGGACGCAAGTTTCAGGCCAGGTGGGGGGGGGTGGTGGTGAATCGGATTGATGGAAAAACAGATGTGCTGGCATATTAATTCTCTGGGGAGGGCGGTTCGGTGACTGCTGGATATGTGTGTCAGTGAGTGAACCCACAACACCCCGGGTAGTAACCCAgattctctctgtctctctgcatGCTTTCCAATCACTAGGCAGGGCTGTAGTGCTGCAGTGCCGTCTCCCCCTCTCAACACACCCTCATCCCTAAATCTTTACTAACACTGTGGCGCCACAAGAGTCCAGCCATACCTTGCCATCATATCTAACCCCGTCAAGCACCACAAACTCATCCAGGATTTCCACCCCTGCCCAGAATAGCCCGCCTAAGTGTCCTTCTGTTATGTTTCCACCCGTGCACCTCTCCTTATGGCCTGGTGTTGGATAGGCTCCTGAGAGGAGGGGGAAGAGACGGGGCGGTGTTGACTTGTGGAATGTGTGGAGTTGGAGCAAAGATTCATTAGAGAGCTACTGAACATTTCATGCCATCATCCAAACATTTATTGATGTCTTGCACAAAGTATTAGAGAAGCTTCGAGAATACACGCACCCAGAGCAACTGAAAAAAAAGGATTTGGGGGGGATAGGGGGGTTTACCTGAAAAAACAAAAGGGTTAAAAAGAAGAAATATGAAAGAGCAATCAGCACACTCGTTCCGTATTACTATTGCTGAGTGGGCATTAGCTCTTGCATGTGACCTCTGGCCTGGTCTGTGTGGCTAAAGCCCAAATCCTGCTCACAATAGCTTCCTGTTCCACTTGGATCAACCTCATTTTTGGACTTCAGCAACCAGTCTGACATACAACCTCAGAACATGGTTGAACTACAGACATCGAGTGGGAAGGAGATGTGTTCAGGACACTTTTACATAGAAACGCACCTTTTTTTCTGAAGGAGTTTTTTTGGAAGTTTCATGAATATGGAGATTGCAGAAGAACACTACTattcagcaatatttttttcctcaaatacagaaaaagagACAACTTTTTACCAAAAGAAACCTATGGCACTGCTTTTTAAAACGTCCTCACGGATAGCCCCCACTTTCTTGAGGACAGAAAAGGTCAGCAGAAGATACAAGATTGTGAAActtgaatatttatttactgGGGAAAAAAAGGTTGGGATGAGGCAAAGAAAACGTGACCTAAAGAATCTGTGAAAGTCACCTTATGTATAATGCTAATCCACTGCATTGTGCagaagggtaaaaaaaaaaaaaaaagcgccacTGATCTATCGACGATGACTTAACACGCTAACCAAACATCAAATCAAAACGAAGGTAAGAAAACTCAGCTGTGTCTGGGGCTGCCTACTTGGTGTACATACTTCTTTATGTGCCCATATGAACATATAAAAGCTATGGAATGTAAAGAAGTATGTATTCTTGGTCAGGTGCTGATCCTCAGTTTGTAAACTTTCCCCGAatcactgaatgtgtgtgtgtgtgtgtgtgtatattgagAGAGTGTGATGAATTGTGTAACCAGGGCGCCAGAACTTACTGCAGCAGTGGATTCTGAGAAAAGTCGCTGCTCTTTCAGTAACTTCACCAGCAGTCCACAACGCTCATCCCTAATTTAGAAAATGAAATACTTGATAGTTCAATCAGCAAGATTGGCATGCTTTAGTTTATTGACTAACATTACAATGATTGTTTTAGGGTTCACTTTCTTGAATGAGTTCGGTCACTGCAACCTGAAAGATCTCATGACAGCCTGAGACCTCACCATAAGAACAGAGGCTTATTTGATTATTGGAGAGTTTGCTGCATTCTACGCTTTGAACTGCAGCCAAACGCAACTATGCTCCTGTTTCTGCAGGAGTGGCATGCGTCACAACCATTAATACCCTAATCTTTTCAAACTTGCCTAGAGTGGGTAAGTTCGGGACAACTCGTTTGTGTCCTTTAAGAGTTGAACTACGCTGCAGGGAAGCTGCTGAGCTAACGGCTTTATAAAGAGGGGTAGCACTCAGCTACTAAAAGGAAGCTTCTCTAACATTGCAGGACAGCACGGTTGTCTGTTTTACCCTGCCACCCATTTGTGTCCCCATTGTTCATGTTTGCTAGGCTTGCCAAATGCTTTGCTGGGCCACAGAGTAGTCAGATTAGAGCATGGAAAAATGACAATGCAGGATCAGAGTTGGGTCCGCCTGTCAGCTGATTCCAATTGTCCTCTACAAAAGATATGCGGGGGCCTTCAGAGGCGGACATCCATTTGGGCCTATTTGACTGCAGGTTACAATAGCGATCACTCTGAAACAAATGCAGACTGGCAAACAAGTGCACGAGGAATACAACTGAATGCTAACCCTCAACAGGTGATCATCTAGGTAAATCAAAGACATTAGGGCTTTGAGAGCTTTTCTCCAGGTATTTGTTAGCATTCAAATCACCACCAAATCTGTTCTGGTGATATTTGATTTGTGGCAATGGCTTATGCTAGAGCAGTGCAGCAATTCCAAACGCTTGCGTTTTAAACCTTTTACTTGCTCACCTTGTGTTATCTGCATAAGACGGTGTAAGAGTTTTTGGTCATGACTGGAGCCTGGGAGAGTTGTGGCCCATTTTTCTGAATGTCAGACACTCCCATCTGTCCTCTGTAGGGCTGTGCTCTTTCCATTTTTGTGCACTGCTTGCTGTATGGTTCGCTCCTGTCAGTCGCGTGGCTGTGTTCCCTCTTTCTCGCCCTCAACCCCAGCCTGAGTGACACACACAGCAGATGCTGACATTATCGAATGTTCAGCTGCTGCTCCTGGCTTTTGCCCTCTTATGGCCAGTGTATTTGGGGGCCGAACTTTGTTCAGAATGCCGCAAGCGAGTGTCTGTTCGACAGAGGGAGGGGGATCTGTGGTGTAAATAGCACTTTACTGACCCCCGTTTAATGAGCGCCATATTGAGCAGCAATGACCCCTTGCTGGGTCCAAGCAAGCCACCTGCTAAGAAGCTAAATAGGCTGTCTCTAAGCGTATAGTTACAAAAGTATGGCTTGCAGCGCACTCAGAATTGTTTTCTGGAGTTGCTTCAGCCTTGTGTTGTGACTGACAAGTGGTACAAATATCTACATTTGTCATGATCAATCTCAGAGAAGCTCCCACCACACTTCCTTATTGGATTAAGTGGGCAAATTAGCCATGCGATGTAGCAGAGTATGACTGAATCTCTTCAAAATTTAGAAAGTGACAACTACAGAAAGCAGCACATGCTGACATCTTGATCGGCCAAGCGACACTCTGTCCTCAGCAGGCTTAATCCATCAGCTGCTGTAATTGCTACAAGACTCGTGGACACTTGACTGGAGTGCGGCACGATGGATTATTATCTTTTTTTGCTGAGtgcatttctctctttttttaaccAAAGAGAAGGAAAACGTTTAGAGTGCAGTGAAATGTATTACTCGATAGATGTATCTGAGCTTATTCAATATTTCTTGTCACAAGTTTATCTGTTAATCGTCATACAAGTTCTTGTTTTGTTAAGCAAATCTCAACATCAAACCACAATGCTTTGCTAAAGCTGGTAAAATGGAACCAAATCACCTCTTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGCTATGCTTTGATGACATCATGAACGGTTTTCATCTTGCCTGTTTTGCTTTCGCAGGAAACCAAGATTACATTTGATTTGTAATTGATAAAACTTATTTGAATAAATGTATATGCAATGCA
>TCONS_00031782
CATCAAACCACAATGCTTTGCTAAAGCTGGTAAAATGGAACCAAATCACCTCTTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGCTATGCTTTGATG
>TCONS_00031783
GCCTACTTGGTGTACATACTTCTTTATGTGCCCATATGAACATATAAAAGCTATGGAATGTAAAGAAGTATGTATTCTTGGTCAGGT

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0072350 tricarboxylic acid metabolic process biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006101 citrate metabolic process biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0009060 aerobic respiration biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0050746 regulation of lipoprotein metabolic process biological_process
GO:0050748 negative regulation of lipoprotein metabolic process biological_process
GO:0071691 cardiac muscle thin filament assembly biological_process
GO:0006500 N-terminal protein palmitoylation biological_process
GO:0060254 regulation of N-terminal protein palmitoylation biological_process
GO:0060262 negative regulation of N-terminal protein palmitoylation biological_process
GO:0003008 system process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:1903059 regulation of protein lipidation biological_process
GO:1903060 negative regulation of protein lipidation biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0016043 cellular component organization biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0036379 myofilament cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005576 extracellular region cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005615 extracellular space cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031672 A band cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0031430 M band cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0050840 extracellular matrix binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000103352 ENSDARG00000104548

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033348 False 4600 lncRNA 0.46 2 4114011 4118815
TCONS_00031782 False 99 miRNA 0.42 1 4114118 4114216
TCONS_00031783 True 87 miRNA 0.36 1 4116314 4116400
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_016099 yme1l1b coding downstream 43161 4044636 ~ 4070850 (-)
XLOC_016098 rab18b coding downstream 81279 4019538 ~ 4032732 (-)
XLOC_016097 mmp16b coding downstream 435982 3630307 ~ 3678029 (-)
XLOC_016096 pter coding downstream 497648 3603589 ~ 3616363 (-)
XLOC_016095 NA coding downstream 593845 3519583 ~ 3520166 (-)
XLOC_016101 adipoqb coding upstream 371789 4490604 ~ 4496358 (-)
XLOC_016102 FO704866.1 coding upstream 452198 4571013 ~ 4571103 (-)
XLOC_016103 CABZ01063651.1 coding upstream 512520 4631335 ~ 4642407 (-)
XLOC_016104 tnk2b coding upstream 610340 4729155 ~ 4797512 (-)
XLOC_016105 CU929154.1 coding upstream 693879 4812694 ~ 4814272 (-)
XLOC_016092 CU633991.2 non-coding downstream 697804 3412076 ~ 3416207 (-)
XLOC_016090 FO818692.1 non-coding downstream 987937 3125958 ~ 3126074 (-)
XLOC_016082 NA non-coding downstream 1619711 2485435 ~ 2494300 (-)
XLOC_016081 dre-mir-460 non-coding downstream 1812577 2301358 ~ 2301434 (-)
XLOC_016113 NA non-coding upstream 1330966 5449781 ~ 5453522 (-)
XLOC_016118 NA non-coding upstream 1582283 5701098 ~ 5702648 (-)
XLOC_016123 NA non-coding upstream 1720081 5838896 ~ 5840494 (-)

Expression

Expression of XLOC_016100 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Expression of XLOC_016100 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Co-expression Network