XLOC_016110 (MFN1)


Basic Information

Item Value
gene id XLOC_016110
gene name MFN1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5338759 ~ 5356686 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031804
ATGGAGCAGGATGGTGTTTCACCATTACAGCACTTTGTTGTGGCGAAGAAGACAATCAGTGCTTTGTTTCACCAGCTGCTGGAGTTTGTTAAAGAGGGATCCGATTTTGTGGAAGACACGTGGAGGAGTGAAGACCTGGATAATGTTGCTGAGGAGGATCAGTGTCTGCAGATCCAGACCTGCTTCAGGAAACTCACCGTCATCAAAGACGTGCTGGACCGCAGACATATGAAGGTGGCTTTTTTTGGCAGGACCAGTAATGGAAAGAGTACTATAATCAATGCCATGCTGAGGGAGCGGGTTCTGCCCAGTGGAATCGGCCACACCACTAACTGCTTTCTGAGTGTGGAGGGCACAGATGGAGAACAAGCCTACCTGACCACTGAAGACTCGGAGGAGAGGAAGGGTATTGAGACAGTCAATCATCTGGCTCACGCTCTGCATATGAACAGGAACCAGGACTCAGGCTGTCTGGTTCGAGTGTTTTGGCCTAAAACCAAGTGTGTCCTGCTGAGAGATGACCTGGTCTTGATGGACAGTCCAGGAATAGACGTCACATCAGAGCTGGACAGCTGGATCGACAAGTTCTGTTTAGACGCTGATGTGTTTGTGCTTGTGGCGAACTCTGAGTCTACCATCATGAACACTGAAAAGCACTTTTTCCACAAAGTGAACGAGCGCATATCCAAACCCAACATTTTCATCCTGAACAATCGCTGGGACGCGTCTGTCTTAGAGCCAGAGTATCTGGAAGATGTGCGGAAGCAGCACATGGATCGTTGCGTCAGTTTCTTAGTGGACGAGCTTAAGGTAGTGGACCTAAACAAGGCACCTGACCGCATCTTCTTCGTCTCTGCCAAAGAAGTGCTCAGTGCCAGGATCCACCGTGCCCAGGGAATGCCAGAGACTGgcgGAGCTTTGGCTGAAGGATTCCAAGAGCGACTGATGGAGTTCCAGAGTTTTGAAAGAAcatttgagGAATTTATATCGCAGTCTGCCGTCAAGACCAAGTTTGAGCAGCACACAATCCGAGCCTGGCAGATCATTGAGTCGGTCAAGGCTATCATGGATGCCATCAATATTTCTTCGGCAGAAAAGAAAGTTTTCTCGCTGGAAGATCGCGAGGCTCTTATGGACCGGCTGGAGTTTGTACGTAATCAGCTGAACTTCATAACCGAGGACATCAAGGACAAGATAAAGGTCGTCAGTGATGAAGTGGCTGCCAAGGTGaccagcatcatcatcatcaccccTCACAAAAGGCCAACCCTAGTGTACACAAATACAGAATATGGAGTTATTTTGATGCTACATTAG

Function

symbol description
mfn1 Enables GTPase activity and identical protein binding activity. Involved in GTP metabolic process; mitochondrion localization; and organelle fusion. Located in mitochondrion. Is integral component of mitochondrial outer membrane. Part of outer mitochondrial membrane protein complex. Biomarker of Alzheimer's disease.

GO: NA

KEGG:

id description
ko04137 Mitophagy - animal
ko04621 NOD-like receptor signaling pathway
ko05012 Parkinson disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko03029 Mitochondrial biogenesis

Ensembl:

ensembl_id ENSDARG00000011884

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031804 True 1317 mRNA 0.49 10 5338759 5356686

Neighbor

gene id symbol gene type direction distance location
XLOC_016109 phb2a coding downstream 139328 5178172 ~ 5199431 (-)
XLOC_016108 ptmab coding downstream 203634 5131964 ~ 5135125 (-)
XLOC_016107 dlg1l coding downstream 263947 4900213 ~ 5074812 (-)
XLOC_016106 tfr1a coding downstream 463793 4849269 ~ 4874966 (-)
XLOC_016105 CU929154.1 coding downstream 524487 4812694 ~ 4814272 (-)
XLOC_016111 si:ch1073-184j22.2 coding upstream 40378 5397064 ~ 5404466 (-)
XLOC_016112 wdr33 coding upstream 53746 5410432 ~ 5443745 (-)
XLOC_016113 NA coding upstream 93095 5449781 ~ 5453522 (-)
XLOC_016114 proca coding upstream 99855 5456541 ~ 5475921 (-)
XLOC_016115 saga coding upstream 123439 5480125 ~ 5505094 (-)
XLOC_016102 FO704866.1 non-coding downstream 767656 4571013 ~ 4571103 (-)
XLOC_016100 NA non-coding downstream 1219944 4114011 ~ 4118815 (-)
XLOC_016095 NA non-coding downstream 1818593 3519583 ~ 3520166 (-)
XLOC_016092 CU633991.2 non-coding downstream 1922552 3412076 ~ 3416207 (-)
XLOC_016118 NA non-coding upstream 344412 5701098 ~ 5702648 (-)
XLOC_016123 NA non-coding upstream 482210 5838896 ~ 5840494 (-)
XLOC_016138 CABZ01077605.1 non-coding upstream 1409607 6766293 ~ 6766407 (-)
XLOC_016139 CU694525.1 non-coding upstream 1519065 6875751 ~ 6919316 (-)

Expression

Expression of XLOC_016110(MFN1) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Expression of XLOC_016110(MFN1) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000003_00431473_00447759 MFN1A coding CI01000003 null 431473 ~ 447950 (+)