XLOC_016118


Basic Information

Item Value
gene id XLOC_016118
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5701098 ~ 5702648 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033349
TTCAGAGAGACTCAACAGGACTGAAGAAATATGCTTCTCTTTACTCTGGTCCTCGCATCTCTACTCCTGCCTGGAGGCGCATCTGACAAACCAGCGCACAATAAAGCGATGGAGACCTCAGATATACAGGACATACAGGACTATCTTGAAAGTTACATCCCGAGACTTTCAGTACTGCTCTCCAATCTAAAGGACGTCGAGCTGGACGATAACATGGCCTTCAGAGGAGCTTTACAAGACCGACAGAGTCCAGTGAAAAGACAAGAGAACGCAGCTGATGGACTTTCAAATAAAGCTCCTAAATTATGCCTCTACTGGAAAACATGGGCCTCTTGTGTTTAAGCTAATGGCTGTTTGTTGTAGTGTAGTATTTCATCTGCTTATTGTAACATTGCAAATAAATACCAAATATAATAGTTTCAATGAAGACATAAGAGAAAGCAAgacacttttgttattttatgaataaaaaaagcttgatgtaatgtgtatttatttagtgcATGTATCGTGTAtggcaggggtgtctaaactcggtcctgga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033349 True 544 lncRNA 0.41 2 5701098 5702648
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_016117 parla coding downstream 140079 5543901 ~ 5561019 (-)
XLOC_016116 cldn15la coding downstream 183660 5508542 ~ 5517438 (-)
XLOC_016115 saga coding downstream 196004 5480125 ~ 5505094 (-)
XLOC_016114 proca coding downstream 225177 5456541 ~ 5475921 (-)
XLOC_016113 NA coding downstream 247576 5449781 ~ 5453522 (-)
XLOC_016119 cwc25 coding upstream 6776 5709424 ~ 5723786 (-)
XLOC_016120 sst2 coding upstream 23705 5726353 ~ 5728895 (-)
XLOC_016121 nyap2b coding upstream 32222 5734870 ~ 5776030 (-)
XLOC_016122 mier1b coding upstream 108834 5811482 ~ 5836116 (-)
XLOC_016123 NA coding upstream 136248 5838896 ~ 5840494 (-)
XLOC_016105 CU929154.1 non-coding downstream 886826 4812694 ~ 4814272 (-)
XLOC_016102 FO704866.1 non-coding downstream 1129995 4571013 ~ 4571103 (-)
XLOC_016100 NA non-coding downstream 1582283 4114011 ~ 4118815 (-)
XLOC_016095 NA non-coding downstream 2180932 3519583 ~ 3520166 (-)
XLOC_016138 CABZ01077605.1 non-coding upstream 1063645 6766293 ~ 6766407 (-)
XLOC_016139 CU694525.1 non-coding upstream 1173103 6875751 ~ 6919316 (-)
XLOC_016140 CU693440.1 non-coding upstream 1206014 6908662 ~ 6908681 (-)
XLOC_016141 AL953893.1 non-coding upstream 1377654 7080302 ~ 7080925 (-)

Expression

Expression of XLOC_016118 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
End of interactive chart.

Co-expression Network