XLOC_016168 (st6galnac3)


Basic Information

Item Value
gene id XLOC_016168
gene name st6galnac3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9330146 ~ 9489611 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031899
CCGAGCTCTGTAGATATGAGAATAGAGCATGAATAACGGGACTCCATAATATTTACTGAAATGCTTCGTCGCAACATGAGCGTTGCACATATGTGGCGTAtagaaataaatcattaaattgtcAACACTCGTCTATACACTGAGACAAGCACTCCGGCGCTGCGAGCTGTTTATTTAGGCTTAGGATGGCCTGGATCTGGAAGAAGAAGTCAGTGATAGTTACCAGCCTTATCGTGGTGGTGTCTCTGTTTTTGGTGGTGATTAACTGTTCGGAGAAACCCTACTTCCTACTGCAGCCTGTATTCGGCCAAAGCTTCAGCAGAAACTGGATGTTCTCTCGTCCACCACACAAAGCCTCCAAACCTCACCACGGCTATCTCAGCGTTCCTAACCTGGAGCCGCTGAAGCTGCATTGTGAGGTCTGCAGTGTAGTGTCCAGCTCTGGCCAGATATTGGGACGTGAGGCAGGGGCTGACATTGACCAGTCCTCTTGCATATGGAGAATGAACAATGCACCCACCCGGGGCTTTGAGAGGGATGTGGGACACAGGACAGACCTGAGGGTTGTGTCTCACACAAGTGTTCCTCTGCTAATTCAAAAACCCCAGCACTTCTTCGGACAGGGGAATGAGACCGTCTATGTGGTCTGGGGACCACTGCGCAACATGAGGCAGGATGGGAAAGGCATTGTTTACAACATGCTGCGACAAGCGGTTGAAAACTACCCACAGGCTCGCATTTACGTCACCACAGAAGAGCGCATGAATTACTGCGACACTGTTTTCAAGAAGGAGACCGGCAAAGACAGGATTCAGTCGGGGTCGTACCTGAGCACTGGTTGGTTCACGCTTATTCTGGCAATGGACATGTGCAAGGAGATTCGAGTCTACGGCATGATCAATGACACATACTGCAAaTCAGAAGGCTACAAGAAGGTGCCATACCACTACTATGAAGCAGGGAGCCGTGACGAATGTGCAGAATACCTCCTCCATGAGAGTGCTCCTTACGGCGGCCATCGCTTTATCACTGAAAAGGCAGTTTTTGCAAAGTGGGCTAAGACGCACCCCATCAAATTTTTCAGTCCGGAGTGGCAGCTGTCGTGACCCAGACTCCCATTCTTTCCGAAAATTCCCTAGCGCTACCACCCTGTTGGCTAGTTCCCACTTCATCACAATGTAAACACAAACTTGCTGTGCAGTGGCAAACAAATCATTCCGATTTGTGATTTCAAACTGCAGTTTTCTGAGGAAAGTAACTACCCTACACCATAAGGAAACATCTAACCACATTTATCGAAACTGATGTCGATTGTTGCATGTTCTTATTTTGTTCTCACCTGGAAAGTCAagtagttaaacattttttcaggGGCACATCAACGAAAACACATTACAAACTTGTTCAATCTTTTATCACTTCAAATGTATTCACATTAGGGCTGGCTGATATTCCAAATTGTAAAAAAGTATATTTCGGCATTTCGattatttttctgtttatataACTTGGTCTAAAATGGCTTATAGGGCATTCTGCgtctaaaataaattacaatagaataaaacaatgtaaaagcaGTGCAGTGGAAGGCAAAAATGCGCTCTGTGGAAATAGAACGGAATAAATTATATCATCATAGTACCTAGTACTGGTGATAAAAATAGCTACACTGAAACGGATGTGCACATAAATAGCTGgacaaaa
>TCONS_00033775
CTTTGGCTCTGGAAAAAGAAGTCAGTGATAGTTACCAGCCTTATCGTGGTGGTGTCTCTGTTTTTGGTGGTGATTAACTGTTCGGAGAAACCCTACTTCCTACTGCAGCCTGTATTCGGCCAAAGCTTCAGCAGAAACTGGATGTTCTCTCGTCCACCACACAAAGCCTCCAAACCTCACCACGGCTATCTCAGCGTTCCTAACCTGGAGCCGCTGAAGCTGCATTGTGAGGTCTGCAGTGTAGTGTCCAGCTCTGGCCAGATATTGGGACGTGAGGCAGGGGCTGACATTGACCAGTCCTCTTGCATATGGAGAATGAACAATGCACCCACCCGGGGCTTTGAGAGGGATGTGGGACACAGGACAGACCTGAGGGTTGTGTCTCACACAAGTGTTCCTCTGCTAATTCAAAAACCCCAGCACTTCTTCGGACAGGGGAATGAGACCGTCTATGTGGTCTGGGGACCACTGCGCAACATGAGGCAGGATGGGAAAGGCATTGTTTACAACATGCTGCGACAAGCGGTTGAAAACTACCCACAGGCTCGCATTTACGTCACCACAGAAGAGCGCATGAATTACTGCGACACTGTTTTCAAGAAGGAGACCGGCAAAGACAGGATTCAGTCGGGGTCGTACCTGAGCACTGGTTGGTTCACGCTTATTCTGGCAATGGACATGTGCAAGGAGATTCGAGTCTACGGCATGATCAATGACACATACTGCAAaTCAGAAGGCTACAAGAAGGTGCCATACCACTACTATGAAGCAGGGAGCCGTGACGAATGTGCAGAATACCTCCTCCATGAGAGTGCTCCTTACGGCGGCCATCGCTTTATCACTGAAAAGGCAGTTTTTGCAAAGTGGGCTAAGACGCACCCCATCAAATTTTTCAGTCCGGAGTGGCAGCTGTCGTGACCCAGACTCCCATTCTTTCCGAAAATTCCCTAGCGCTACCACCCTGTTGGCTAGTTCCCACTTCATCACAATGTAAACACAAACTTGCTGTGCAGTGGCAAACAAATCATTCCGATTTGTGATTTCAAACTGCAGTTTTCTGAGGAAAGTAACTACCCTACACCATAAGGAAACATCTAACCACATTTATCGAAACTGATGTCGATTGTTGCATGTTCTTATTTTGTTCTCACCTGGAAAGTCAagtagttaaacattttttcaggGGCACATCAACGAAAACACATTACAAACTTGTTCAATCTTTTATCACTTCAAATGTATTCACATTAGGGCTGGCTGATATTCCAAATTGTAAAAAAGTATATTTCGGCATTTCGattatttttctgtttatataACTTGGTCTAAAATGGCTTATAGGGCATTCTGCgtctaaaataaattacaatagaataaaacaatgtaaaagcaGTGCAGTGGAAGGCAAAAATGCGCTCT

Function

symbol description
st6galnac3 Predicted to enable alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity. Predicted to be involved in ganglioside biosynthetic process and oligosaccharide metabolic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in brain; heart; and intestine. Orthologous to human ST6GALNAC3 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3).

GO:

id name namespace
GO:0009311 oligosaccharide metabolic process biological_process
GO:0001574 ganglioside biosynthetic process biological_process
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0001665 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity molecular_function
GO:0008373 sialyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1329 Predicted to enable alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity. Predicted to be involved in ganglioside biosynthetic process and oligosaccharide metabolic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in brain; heart; and intestine. Orthologous to human ST6GALNAC3 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3).

Ensembl:

ensembl_id ENSDARG00000058473

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031899 False 1707 mRNA 0.45 5 9330146 9489611
TCONS_00033775 True 1419 lncRNA 0.46 5 9330246 9419088
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Neighbor

gene id symbol gene type direction distance location
XLOC_016167 st6galnac5a coding downstream 70144 9160947 ~ 9260002 (-)
XLOC_016166 ak5 coding downstream 270191 8845840 ~ 9059955 (-)
XLOC_016165 NA coding downstream 489262 8835922 ~ 8840884 (-)
XLOC_016164 miga1 coding downstream 641387 8663108 ~ 8688759 (-)
XLOC_016163 si:ch211-71m22.3 coding downstream 681706 8644422 ~ 8648440 (-)
XLOC_016170 cope coding upstream 23549 9513160 ~ 9527210 (-)
XLOC_016171 slc25a24l coding upstream 39877 9529488 ~ 9544161 (-)
XLOC_016172 txndc12 coding upstream 102708 9592319 ~ 9607879 (-)
XLOC_016173 zmp:0000001127 coding upstream 131678 9621289 ~ 9625548 (-)
XLOC_016174 zgc:153615 coding upstream 139947 9629558 ~ 9646857 (-)
XLOC_016162 CT027589.1 non-coding downstream 695014 8634240 ~ 8635132 (-)
XLOC_016159 NA non-coding downstream 835430 8490588 ~ 8494716 (-)
XLOC_016156 NA non-coding downstream 1413759 7915351 ~ 7916387 (-)
XLOC_016148 NA non-coding downstream 1782127 7546686 ~ 7548019 (-)
XLOC_016176 CU633992.1 non-coding upstream 198444 9688055 ~ 9688185 (-)
XLOC_016178 NA non-coding upstream 256826 9746437 ~ 9748216 (-)
XLOC_016181 BX470264.1 non-coding upstream 373222 9862833 ~ 9863388 (-)
XLOC_016199 CR450845.2 non-coding upstream 1415451 10905062 ~ 10905179 (-)
XLOC_016204 BX901918.3 non-coding upstream 1841113 11330724 ~ 11331316 (-)

Expression

Expression of XLOC_016168(st6galnac3) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
End of interactive chart.

Expression of XLOC_016168(st6galnac3) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000003_02070747_02072861 NA coding CI01000003 null 2070747 ~ 2073389 (+)