XLOC_016179 (ap2m1a)


Basic Information

Item Value
gene id XLOC_016179
gene name ap2m1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9789811 ~ 9818711 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031916
TTGCGTTGTCACTTGTTATACGCATGCGCACTGTGAACACTGTCAGCTGACTTCCTGGCTGAGGGAGGGACTGCTTTCTGCTAGTGAGTGACCCGCTAATCCTTTAGATCCCGAAAAAACACCACGGAGAGGGAAACAGTTCATTCCGCGCCTATTCGTGCGGACATTTAGTAGGAGAGCCCACCATGGAATGTGAGGTTTGAGGACCAGCCACCATGATTGGAGGACTGTTCATCTACAACCATAAAGGGGAGGTGCTGATCTCCCGTGTCTACCGCGATGATATAGGGCGAAACGCAGTGGATGCGTTCCGTGTGAACGTGATCCATGCCCGTCAGCAGGTGCGCTCTCCGGTCACCAACATTGCCCGCACCAGCTTCTTCCACGTCAAGCGCTCCAACATCTGGCTGGCTGCCGTCACCAAGCAGAATGTCAACGCTGCTATGGTGTTCGAGTTCCTCTACAAGATGTGCGACGTCATGACGGCCTACTTTGGGAAGATCAGCGAGGAAAATATCAAGAATAACTTTGTACTTATCTACGAGTTGCTGGATGAGATTCTGGACTTTGGATACCCGCAGAACTCGGAGACAGGAGCGCTGAAGACCTTTATTACCCAGCAGGGCATTAAAGGCCAGCATCAGACTAAGGAGGAACAGTCTCAGATCACCAGCCAGGTGACGGGTCAAATCGGTTGGCGTCGTGAAGGCATCAAGTACCGCCGCAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTCAACTTGCTTATGTCTCCCCAGGGTCAGGTCCTGAGTGCTCACGTCTCTGGTCGTGTGGTGATGAAAAGCTATCTGAGCGGAATGCCTGAATGCAAATTTGGAATGAATGACAAAATCGTCATCGACAAGCAGGGCAAAGGAGGAACCACTGATGATGCTGGGAAAAGTGGGAAACAGTCCATAGCCATCGACGACTGCACTTTCCATCAGTGTGTGCGTCTTAGCAAGTTCGACTCGGAGCGCAGCATCAGTTTCATCCCTCCTGATGGCGAATATGAGCTCATGAGGTACCGCACCACTAAGGACATAATTCTGCCCTTCCGGGTCATTCCACTGGTTCGAGAGGTTGGACGCACAAAGCTGGAGGTCAAAGTTGTCATCAAATCTAACTTCAAACCCTCACTCCTGGCACAGAAAATAGAGGTGCGCATTCCAACACCTCTGAACACTAGTGGAGTTCAGGTGATCTGCATGAAAGGAAAAGCCAAATACAAGGCCAGCGAGAACGCCATCGTGTGGAAGATCAAACGTATGGCAGGAATGAAGGAATCTCAGATCAGTGCTGAGATCGAGCTGCTGCCCACTAATGATAAGAAGAAGTGGGCCCGTCCACCCATTTCCATGAACTTTGAGGTTCCCTTTGCTCCTTCGGGGTTGAAGGTGCGTTACCTGAAGGTGTTTGAGTCCAAACTGAACTACAGCGACCATGATGTGATTAAATGGGTGCGATACATCGGACGCAGCGGAATCTACGAGACGCGCTGCTAATGGCCACCAAGCAGAGGGACCAGCTTTTATTCTCCTATAAGTATACTATGTTTCCCTCTAGCCGTCTCCTTAAAATTTGTGGCTCAAGTAGAAAGCTAATAACAAAAATATGCAAAATGTGAAGTGTAGTTACCTGTATGTGTTTGTACGAGTGCTGTAATGAACAGATTCAGTGTCCTTCCAAGTCCAGCTTCCTGATTCACTGTTATCGGATATCTGGAGACCGTTGTCCATTTTGTCATTGGTTATTTTCCCCACGGTCATACTCTTAGTATCCTATCACTATCTCTCTCTGTGTTTAGATCAGTAAAAATATATAACGAGAACAAACTGAAATGGTGTGGAGTTTTTcttactttgtttgtttgtttcattacaGCGCAGATCAAAATTTGAGAACAGTTCATTAAAACACAGAGGCAACATGTATGATGTTTTTTCATGAAATATCCAAAAACCACAAGAACAGTGTTACAGTGCAatcagaaagtattcatagcgcttcactttttccacatgttttttgttgttgttcagcctcattccaaaatggattaaattaatttatttcttcaattctacacagaataccccataatgacaatgtgaaaaagagtttttgaaacttgcaaatttattaaaaataaaaaaactgaaaaaa
>TCONS_00031918
ACTGTCAGCTGACTTCCTGGCTGAGGGAGGGACTGCTTTCTGCTAGTGAGTGACCCGCTAATCCTTTAGATCCCGAAAAAACACCACGGAGAGGGAAACAGTTCATTCCGCGCCTATTCGTGCGGACATTTAGTAGGAGAGCCCACCATGGAATGTGAGGTTTGAGGACCAGCCACCATGATTGGAGGACTGTTCATCTACAACCATAAAGGGGAGGTGCTGATCTCCCGTGTCTACCGCGATGATATAGGGCGAAACGCAGTGGATGCGTTCCGTGTGAACGTGATCCATGCCCGTCAGCAGGTGCGCTCTCCGGTCACCAACATTGCCCGCACCAGCTTCTTCCACGTCAAGCGCTCCAACATCTGGCTGGCTGCCGTCACCAAGCAGAATGTCAACGCTGCTATGGTGTTCGAGTTCCTCTACAAGATGTGCGACGTCATGACGGCCTACTTTGGGAAGATCAGCGAGGAAAATATCAAGAATAACTTTGTACTTATCTACGAGTTGCTGGATGAGATTCTGGACTTTGGATACCCGCAGAACTCGGAGACAGGAGCGCTGAAGACCTTTATTACCCAGCAGGGCATTAAAGGCCAGCCTCAGACTAAGGAGGAACAGTCTCAGATCACCAGCCAGGTGACGGGTCAAATCGGTTGGCGTCGTGAAGGCATCAAGTACCGCCGCAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTCAACTTGCTTATGTCTCCCCAGGGTCAGGTCCTGAGTGCTCACGTCTCTGGTCGTGTGGTGATGAAAAGCTATCTGAGCGGAATGCCTGAATGCAAATTTGGAATGAATGACAAAATCGTCATCGACAAGCAGGGCAAAGGAGGAACCACTGATGATGCTGGGAAAAGTGAGTTAGGGGGAAGTGGGAAACAGTCCATAGCCATCGACGACTGCACTTTCCATCAGTGTGTGCGTCTTAGCAAGTTCGACTCGGAGCGCAGCATCAGTTTCATCCCTCCTGATGGCGAATATGAGCTCATGAGGTACCGCACCACTAAGGACATAATTCTGCCCTTCCGGGTCATTCCACTGGTTCGAGAGGTTGGACGCACAAAGCTGGAGGTCAAAGTTGTCATCAAATCTAACTTCAAACCCTCACTCCTGGCACAGAAAATAGAGGTGCGCATTCCAACACCTCTGAACACTAGTGGAGTTCAGGTGATCTGCATGAAAGGAAAAGCCAAATACAAGGCCAGCGAGAACGCCATCGTGTGGAAGATCAAACGTATGGCAGGAATGAAGGAATCTCAGATCAGTGCTGAGATCGAGCTGCTGCCCACTAATGATAAGAAGAAGTGGGCCCGTCCACCCATTTCCATGAACTTTGAGGTTCCCTTTGCTCCTTCGGGGTTGAAGGTGCGTTACCTGAAGGTGTTTGAGTCCAAACTGAACTACAGCGACCATGATGTGATTAAATGGGTGCGATACATCGGACGCAGCGGAATCTACGAGACGCGCTGCTAATGGCCACCAAGCAGAGGGACCAGCTTTTATTCTCCTATAAGTATACTATGTTTCCCTCTAGCCGTCTCCTTAAAATTTGTGGCTCAAGTAGAAAGCTAATAACAAAAATATGCAAAATGTGAAGTGTAGTTACCTGTATGTGTTTGTACGAGTGCTGTAATGAACAGATTCAGTGTCCTTCCAAGTCCAGCTTCCTGATTCACTGTTATCGGATATCTGGAGACCGTTGTCCATTTTGTCATTGGTTATTTTCCCCACGGTCATACTCTTAGTATCCTATCACTATCTCTCTCTGTGTTTAGATCAGTAAAAATATATAACGAGAACAAACTGAAATGGTGTGGAGTTTTTcttactttgtttgtttgtttcattacaGCGCAGATCAAAATTTGAGAACAGTTCATTAAAACACAGAGGCAACATGTATGATGTTTTTTCATGAAATATCCAAAAACCACAAGAACAGTGTTACAGTGCAatcagaaagtattcatagcgcttcactttttccacatgttttttgttgttgttcagcctcattccaaaatggattaaattaatttatttcttcaattctacacagaataccccataatgacaatgtgaaaaagagtttttgaaacttgcaaatttatt
>TCONS_00031917
ACTGTCAGCTGACTTCCTGGCTGAGGGAGGGACTGCTTTCTGCTAGTGAGTGACCCGCTAATCCTTTAGATCCCGAAAAAACACCACGGAGAGGGAAACAGTTCATTCCGCGCCTATTCGTGCGGACATTTAGTAGGAGAGCCCACCATGGAATGTGAGGTTTGAGGACCAGCCACCATGATTGGAGGACTGTTCATCTACAACCATAAAGGGGAGGTGCTGATCTCCCGTGTCTACCGCGATGATATAGGGCGAAACGCAGTGGATGCGTTCCGTGTGAACGTGATCCATGCCCGTCAGCAGGTGCGCTCTCCGGTCACCAACATTGCCCGCACCAGCTTCTTCCACGTCAAGCGCTCCAACATCTGGCTGGCTGCCGTCACCAAGCAGAATGTCAACGCTGCTATGGTGTTCGAGTTCCTCTACAAGATGTGCGACGTCATGACGGCCTACTTTGGGAAGATCAGCGAGGAAAATATCAAGAATAACTTTGTACTTATCTACGAGTTGCTGGATGAGATTCTGGACTTTGGATACCCGCAGAACTCGGAGACAGGAGCGCTGAAGACCTTTATTACCCAGCAGGGCATTAAAGGCCAGCCTCAGACTAAGGAGGAACAGTCTCAGATCACCAGCCAGGTGACGGGTCAAATCGGTTGGCGTCGTGAAGGCATCAAGTACCGCCGCAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTCAACTTGCTTATGTCTCCCCAGGGTCAGGTCCTGAGTGCTCACGTCTCTGGTCGTGTGGTGATGAAAAGCTATCTGAGCGGAATGCCTGAATGCAAATTTGGAATGAATGACAAAATCGTCATCGACAAGCAGGGCAAAGGAGGAACCACTGATGATGCTGGGAAAAGTGGGAAACAGTCCATAGCCATCGACGACTGCACTTTCCATCAGTGTGTGCGTCTTAGCAAGTTCGACTCGGAGCGCAGCATCAGTTTCATCCCTCCTGATGGCGAATATGAGCTCATGAGGTACCGCACCACTAAGGACATAATTCTGCCCTTCCGGGTCATTCCACTGGTTCGAGAGGTTGGACGCACAAAGCTGGAGGTCAAAGTTGTCATCAAATCTAACTTCAAACCCTCACTCCTGGCACAGAAAATAGAGGTGCGCATTCCAACACCTCTGAACACTAGTGGAGTTCAGGTGATCTGCATGAAAGGAAAAGCCAAATACAAGGCCAGCGAGAACGCCATCGTGTGGAAGATCAAACGTATGGCAGGAATGAAGGAATCTCAGATCAGTGCTGAGATCGAGCTGCTGCCCACTAATGATAAGAAGAAGTGGGCCCGTCCACCCATTTCCATGAACTTTGAGGTTCCCTTTGCTCCTTCGGGGTTGAAGGTGCGTTACCTGAAGGTGTTTGAGTCCAAACTGAACTACAGCGACCATGATGTGATTAAATGGGTGCGATACATCGGACGCAGCGGAATCTACGAGACGCGCTGCTAATGGCCACCAAGCAGAGGGACCAGCTTTTATTCTCCTATAAGTATACTATGTTTCCCTCTAGCCGTCTCCTTAAAATTTGTGGCTCAAGTAGAAAGCTAATAACAAAAATATGCAAAATGTGAAGTGTAGTTACCTGTATGTGTTTGTACGAGTGCTGTAATGAACAGATTCAGTGTCCTTCCAAGTCCAGCTTCCTGATTCACTGTTATCGGATATCTGGAGACCGTTGTCCATTTTGTCATTGGTTATTTTCCCCACGGTCATACTCTTAGTATCCTATCACTATCTCTCTCTGTGTTTAGATCAGTAAAAATATATAACGAGAACAAACTGAAATGGTGTGGAGTTTTTcttactttgtttgtttgtttcattacaGCGCAGATCAAAATTTGAGAACAGTTCATTAAAACACAGAGGCAACATGTATGATGTTTTTTCATGAAATATCCAAAAACCACAAGAACAGTGTTACAGTGCAatcagaaagtattcatagcgcttcactttttccacatgttttttgttgttgttcagcctcattccaaaatggattaaattaatttatttcttcaattctacacagaataccccataatgacaatgtgaaaaagagtttttgaaacttgcaaatttatt
>TCONS_00031919
ATGATTGGAGGACTGTTCATCTACAACCATAAAGGGGAGGTGCTGATCTCCCGTGTCTACCGCGATGATATAGGGCGAAACGCAGTGGATGCGTTCCGTGTGAACGTGATCCATGCCCGTCAGCAGGTGCGCTCTCCGGTCACCAACATTGCCCGCACCAGCTTCTTCCACGTCAAGCGCTCCAACATCTGGCTGGCTGCCGTCACCAAGCAGAATGTCAACGCTGCTATGGTGTTCGAGTTCCTCTACAAGATGTGCGACGTCATGACGGCCTACTTTGGGAAGATCAGCGAGGAAAATATCAAGAATAACTTTGTACTTATCTACGAGTTGCTGGATGAGATTCTGGACTTTGGATACCCGCAGAACTCGGAGACAGGAGCGCTGAAGACCTTTATTACCCAGCAGGGCATTAAAGGCCAGCATCAGACTAAGGAGGAACAGTCTCAGATCACCAGCCAGGTGACGGGTCAAATCGGTTGGCGTCGTGAAGGCATCAAGTACCGCCGCAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTCAACTTGCTTATGTCTCCCCAGGGTCAGGTCCTGAGTGCTCACGTCTCTGGTCGTGTGGTGATGAAAAGCTATCTGAGCGGAATGCCTGAATGCAAATTTGGAATGAATGACAAAATCGTCATCGACAAGCAGGGCAAAGGAGGAACCACTGATGATGCTGGGAAAAGTGAGTTAGGGGGAAGTGGGAAACAGTCCATAGCCATCGACGACTGCACTTTCCATCAGTGTGTGCGTCTTAGCAAGTTCGACTCGGAGCGCAGCATCAGTTTCATCCCTCCTGATGGCGAATATGAGCTCATGAGGTACCGCACCACTAAGGACATAATTCTGCCCTTCCGGGTCATTCCACTGGTTCGAGAGGTTGGACGCACAAAGCTGGAGGTCAAAGTTGTCATCAAATCTAACTTCAAACCCTCACTCCTGGCACAGAAAATAGAGGTGCGCATTCCAACACCTCTGAACACTAGTGGAGTTCAGGTGATCTGCATGAAAGGAAAAGCCAAATACAAGGCCAGCGAGAACGCCATCGTGTGGAAGATCAAACGTATGGCAGGAATGAAGGAATCTCAGATCAGTGCTGAGATCGAGCTGCTGCCCACTAATGATAAGAAGAAGTGGGCCCGTCCACCCATTTCCATGAACTTTGAGGTTCCCTTTGCTCCTTCGGGGTTGAAGGTGCGTTACCTGAAGGTGTTTGAGTCCAAACTGAACTACAGCGACCATGATGTGATTAAATGGGTGCGATACATCGGACGCAGCGGAATCTACGAGACGCGCTGCTAA
>TCONS_00031920
TGCTGATCTCCCGTGTCTACCGCGATGATATAGGGCGAAACGCAGTGGATGCGTTCCGTGTGAACGTGATCCATGCCCGTCAGCAGGTGCGCTCTCCGGTCACCAACATTGCCCGCACCAGCTTCTTCCACGTCAAGCGCTCCAACATCTGGCTGGCTGCCGTCACCAAGCAGAATGTCAACGCTGCTATGGTGTTCGAGTTCCTCTACAAGATGTGCGACGTCATGACGGCCTACTTTGGGAAGATCAGCGAGGAAAATATCAAGAATAACTTTGTACTTATCTACGAGTTGCTGGATGAGATTCTGGACTTTGGATACCCGCAGAACTCGGAGACAGGAGCGCTGAAGACCTTTATTACCCAGCAGGGCATTAAAGGCCAGACTAAGGAGGAACAGTCTCAGATCACCAGCCAGGTGACGGGTCAAATCGGTTGGCGTCGTGAAGGCATCAAGTACCGCCGCAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTCAACTTGCTTATGTCTCCCCAGGGTCAGGTCCTGAGTGCTCACGTCTCTGGTCGTGTGGTGATGAAAAGCTATCTGAGCGGAATGCCTGAATGCAAATTTGGAATGAATGACAAAATCGTCATCGACAAGCAGGGCAAAGGAGGAACCACTGATGATGCTGGGAAA
>TCONS_00031921
CATCAGACTAAGGAGGAACAGTCTCAGATCACCAGCCAGGTGACGGGTCAAATCGGTTGGCGTCGTGAAGGCATCAAGTACCGCCGCAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTCAACTTGCTTATGTCTCCCCAGGGTAAGGACAGCATTATCTTAAGTCtcagttctctttagcttgaaggcgtagggctaa
>TCONS_00031922
TGCTTTCTGCTAGTGAGTGACCCGCTAATCCTTTAGATCCCGAAAAAACACCACGGAGAGGGAAACAGTTCATTCCGCGCCTATTCGTGCGGACATTTAGTAGaaaagaaaCTCCAACAGGCTTGTAACAagttgagaGAGAGCCCACCATGGAATGTGAGGTTTGAGGACCAGCCACCATGATTGGAGGACTGTTCATCTACAACCATAAAGGGGAGGTGCTGATCTCCCGTGTCTACCGCGATGATATAGGGCGAAACGCAGTGGATGCGTTCCGTGTGAACGTGATCCATGCCCGTCAGCAGGTGCGCTCTCCGGTCACCAACATTGCCCGCACCAGCTTCTTCCACGTCAAGCGCTCCAACATCTGGCTGGCTGCCGTCACCAAGCAGAATGTCAACGCTGCTATGGTGTTCGAGTTCCTCTACAAGATGTGCGACGTCATGACGGCCTACTTTGGGAAGATCAGCGAGGAAAATATCAAGAATAACTTTGTACTTATCTACGAGTTGCTGGATG

Function

symbol description
ap2m1a Predicted to enable clathrin adaptor activity. Acts upstream of or within Wnt signaling pathway. Predicted to be located in clathrin-coated pit. Predicted to be part of AP-2 adaptor complex. Predicted to be active in cytoplasmic vesicle. Is expressed in blood; mesoderm; notochord; sensory system; and solid lens vesicle. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability. Orthologous to human AP2M1 (adaptor related protein complex 2 subunit mu 1).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006897 endocytosis biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0072583 clathrin-dependent endocytosis biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0030122 AP-2 adaptor complex cellular_component
GO:0030131 clathrin adaptor complex cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005905 clathrin-coated pit cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0035615 clathrin adaptor activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9784 Predicted to enable clathrin adaptor activity. Acts upstream of or within Wnt signaling pathway. Predicted to be located in clathrin-coated pit. Predicted to be part of AP-2 adaptor complex. Predicted to be active in cytoplasmic vesicle. Is expressed in blood; mesoderm; notochord; sensory system; and solid lens vesicle. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability. Orthologous to human AP2M1 (adaptor related protein complex 2 subunit mu 1).

Ensembl:

ensembl_id ENSDARG00000002790

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031916 False 2187 mRNA 0.46 12 9789811 9818711
TCONS_00031918 False 2142 mRNA 0.46 12 9789833 9818673
TCONS_00031917 False 2127 mRNA 0.46 11 9789833 9818673
TCONS_00031919 False 1326 mRNA 0.51 12 9790472 9816532
TCONS_00031920 False 662 mRNA 0.52 5 9801604 9816492
TCONS_00031921 False 199 lncRNA 0.51 2 9804247 9804547
TCONS_00031922 True 519 mRNA 0.51 4 9808070 9818640
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_016178 NA coding downstream 41595 9746437 ~ 9748216 (-)
XLOC_016177 dvl3a coding downstream 45730 9702053 ~ 9744081 (-)
XLOC_016175 selenot1a coding downstream 93528 9684305 ~ 9696283 (-)
XLOC_016176 CU633992.1 coding downstream 101626 9688055 ~ 9688185 (-)
XLOC_016174 zgc:153615 coding downstream 142954 9629558 ~ 9646857 (-)
XLOC_016180 si:ch211-252f13.5 coding upstream 29925 9848636 ~ 9857932 (-)
XLOC_016181 BX470264.1 coding upstream 44122 9862833 ~ 9863388 (-)
XLOC_016182 abi1b coding upstream 49890 9868601 ~ 9915870 (-)
XLOC_016183 zgc:55943 coding upstream 139370 9958081 ~ 9971728 (-)
XLOC_016184 CR956623.2 coding upstream 143157 9961868 ~ 10014821 (-)
XLOC_016169 CR385076.1 non-coding downstream 383136 9406558 ~ 9406675 (-)
XLOC_016165 NA non-coding downstream 948927 8835922 ~ 8840884 (-)
XLOC_016162 CT027589.1 non-coding downstream 1154679 8634240 ~ 8635132 (-)
XLOC_016199 CR450845.2 non-coding upstream 1086351 10905062 ~ 10905179 (-)
XLOC_016204 BX901918.3 non-coding upstream 1512013 11330724 ~ 11331316 (-)
XLOC_016205 BX901918.2 non-coding upstream 1518329 11337040 ~ 11337983 (-)
XLOC_016208 NA non-coding upstream 1738264 11556975 ~ 11558124 (-)

Expression

Expression of XLOC_016179(ap2m1a) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
End of interactive chart.

Expression of XLOC_016179(ap2m1a) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
End of interactive chart.

Co-expression Network