XLOC_016200 (ssbp3a)


Basic Information

Item Value
gene id XLOC_016200
gene name ssbp3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10934479 ~ 11027410 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031959
GGAAGCATCGCAGTCAAGCTGGCAGACGCGTTTATTTTCAGCCACAGACATGTTCGCCAAAGGTAAAGGGACCGCGGTGCCATCGGACGGGCAGGCTCGGGAAAAaTTGGCATTATATGTCTATGAATATTTGTTGCACGTGGGAGCTCAGAAATCCGCACAGACGTTTTTATCAGAGATAAGATGGGAGAAGAACATAACCCTGGGTGAACCGCCAGGCTTTCTGCACTCTTGGTGGTGTGTGTTTTGGGACCTGTACTGCGCAGCACCCGAGCGAAGGGACACATGTGATCACTCCAGTGAAGCGAAGGCCTTCCACGACTATAGCGCAGCTGCAGCACCAAGTCCAGTACTGGGCAACTTGCCCCCCGGTGATGGGATGCCAGGCGGCCCTATACCTCCCGGATTCTTTCAGGGACCCCCTGGTTCCCAACCCTCCCCTCACGCTCAGCTCCCTCCAAACGCTAACATGATGGCCGCGCACGGACAGCCATTTATGTCACCTCGCTATGCTGGAGGACCTCGACCGCCCATGAGAATGGGTAACCCGCCTCCAGGTGGACAGCCTTTACCTCCAAATATGATGGACCCTACAAGACCAACAGGCCATCCAAACCTGGCATCCATGCAGAGAATGAACGCTCCACGAGGAATGGGCCCAATGGGACCAGGACCACAGTCTGACCCATGGTTATCACTACAGAACTATGGTGGAGGAATGAGGCCTCCAAACTCTATGGGGCCGGGAATGCCAGGAGTAAACATGGTAGCAGGAGCTGGCAGACCGTGGCCGAATCCTAATAATGGAAACACGATCTCATATTCCTCTTCATCCCCAGGAACATATGTGGGTCCTCCAGGAGGAGCAGGAGGTGGTGGATGTCCTCCAGGAACACCTATCATGCCAAGTCCAGCAGACTCCACTAACTCGGGTGAAAACCTCTACACATTGATAAACTCAGTGCCACCAGGAGGAAACAGATCCAGTTTTACTATGGGTCCGGGGTCAGATGGTCCAATGGGAGGACTGGAGCCACATCATATGAATGGATCATTAGGTTCAGGTGACATCGATGGACTCACAAAGAACTCCCCTAATAATCTGAGTGGCCTGAGCAACCCTCCAGGAACACCACGAGACGACGCTGAACTGAGCGGAAGCTTCCTGCACTCCTTCCAGAATGAAAATTACTCACCAACAATGACAATGAGTGTGTGAAGGACAAACCCCAGCTCCAACTCCAGGGACCAACTTCAACGAGACCCAGAGTGAGTCAAACCTCACACTTAATACCAACCAAATCCTGCCGAAGCTCTGGGCGAACCAGGCGCTCCTCGTTCCAGCATGAATAGATGAACTCTGCTTACAGGAAGGACCTGTCTGAGACGGGAGCTCCCCTCCCCTTCCACCTTTTACACCTCTTTTACATTTTGTATTGCTTTATCAGATGCCCCCCTCCACAGGACAAGACGACATAAGCTTGTTTCTTTTCAGTAAGTTGATCTGAAATGGTCGGGACCATGACAACATTACACTGTGGATGTAGTGCTGCATACTAGAGCTTCTTCAGCGCAGACACAGCGTCTGTATCACATTCCATTAGAGTATTTTAGGATCTAGTCTGATATTTTAAAAAACGTTTCATAACCCCTGTCTCTCTGTAATGACTTCCTTGACAATGACTTACTCCAGAGGAATGGCTTGGGCTACAGCAGATGAAATGCACTGACAGGAATGGCAATTAATCTACTGTCCTTTATTCCTTTCTGATGCATACTTAGGAACGTAAAGGACTGTTAGTAAAAGGTTTCTCCATTTTGTTGTTTTCTATTTATGGATTTTATTGCTGAAGTCTTTTAATAACAGCAGTGACACCTACTATAAGACAATTGTGGTATGTGTCATGTTTTCCATAgattgacattatttatttaatagtttgcccaaaaatgaaaactgagtCATCGTTTAGGATGTTCACCCTTTTTTGTATTAAAGGTTTGATTCGATTA
>TCONS_00031960
CAATCATGCGGACGGGGCCCCGCCCATAGTTCATGATCTGGCTGTGGCAGGGTCGGTTGAAGCGGATGGGGTCAGAGGCGGGCTGCACGTTGACAGCTGGAGCATAAGGAAGCATCGCAGTCAAGCTGGCAGACGCGTTTATTTTCAGCCACAGACATGTTCGCCAAAGGTAAAGGGACCGCGGTGCCATCGGACGGGCAGGCTCGGGAAAAaTTGGCATTATATGTCTATGAATATTTGTTGCACGTGGGAGCTCAGAAATCCGCACAGACGTTTTTATCAGAGATAAGATGGGAGAAGAACATAACCCTGGGTGAACCGCCAGGCTTTCTGCACTCTTGGTGGTGTGTGTTTTGGGACCTGTACTGCGCAGCACCCGAGCGAAGGGACACATGTGATCACTCCAGTGAAGCGAAGGCCTTCCACGACTATAGCGCAGCTGCAGCACCAAGTCCAGTACTGGGCAACTTGCCCCCCGGTGATGGGATGCCAGGCGGCCCTATACCTCCCGGATTCTTTCAGCAGGGACCCCCTGGTTCCCAACCCTCCCCTCACGCTCAGCTCCCTCCAAACGCTAACATGATGGCCGCGCACGGACAGCCATTTATGTCACCTCGCTATGCTGGAGGACCTCGACCGCCCATGAGAATGGGTAACCCGCCTCCAGGTGGACAGCCTTTACCTCCAAATATGATGGACCCTACAAGACCAACAGGCCATCCAAACCTGGCATCCATGCAGAGAATGAACGCTCCACGAGGAATGGGCCCAATGGGACCAGGACCACAGTCTGACCCATGGTTATCACTACAGAACTATGGTGGAGGAATGAGGCCTCCAAACTCTATGGGGCCGGGAATGCCAGGAGTAAACATGGTAGCAGGAGCTGGCAGACCGTGGCCGAATCCTAATAATGGAAACACGATCTCATATTCCTCTTCATCCCCAGGAACATATGTGGGTCCTCCAGGAGGAGCAGGAGGTGGTGGATGTCCTCCAGGAACACCTATCATGCCAAGTCCAGCAGACTCCACTAACTCGGGTGAAAACCTCTACACATTGATAAACTCAGTGCCACCAGGAGGAAACAGATCCAGTTTTACTATGGGTCCGGGGTCAGATGGTCCAATGGGAGGACTGGAGCCACATCATATGAATGGATCATTAGGTTCAGGTGACATCGATGGACTCACAAAGAACTCCCCTAATAATCTGAGTGGCCTGAGCAACCCTCCAGGAACACCACGAGACGACGCTGAACTGAGCGGAAGCTTCCTGCACTCCTTCCAGAATGAAAATTACTCACCAACAATGACAATGAGTGTGTGA
>TCONS_00031961
GATTATGAGGTCGCGTCGAACACATCCATTGGTGTATGTAGCTGTCAATCATGCGGACGGGGCCCCGCCCATAGTTCATGATCTGGCTGTGGCAGGGTCGGTTGAAGCGGATGGGGTCAGAGGCGGGCTGCACGTTGACAGCTGGAGCATAAGGAAGCATCGCAGTCAAGCTGGCAGACGCGTTTATTTTCAGCCACAGACATGTTCGCCAAAGGTAAAGGGACCGCGGTGCCATCGGACGGGCAGGCTCGGGAAAAaTTGGCATTATATGTCTATGAATATTTGTTGCACGTGGGAGCTCAGAAATCCGCACAGACGTTTTTATCAGAGATAAGATGGGAGAAGAACATAACCCTGGGTGAACCGCCAGGCTTTCTGCACTCTTGGTGGTGTGTGTTTTGGGACCTGTACTGCGCAGCACCCGAGCGAAGGGACACATGTGATCACTCCAGTGAAGCGAAGGCCTTCCACGACTATAGCGCAGCTGCAGCACCAAGTCCAGTACTGGGCAACTTGCCCCCCGGTGATGGGATGCCAGGCGGCCCTATACCTCCCGGATTCTTTCAGCCATTTATGTCACCTCGCTATGCTGGAGGACCTCGACCGCCCATGAGAATGGGTAACCCGCCTCCAGGTGGACAGCCTTTACCTCCAAATATGATGGACCCTACAAGACCAACAGGCCATCCAAACCTGGCATCCATGCAGAGAATGAACGCTCCACGAGGAATGGGCCCAATGGGACCAGGACCACAGTCTGACCCATGGTTATCACTACAGAACTATGGTGGAGGAATGAGGCCTCCAAACTCTATGGGGCCGGGAATGCCAGGAGTAAACATGGTAGCAGGAGCTGGCAGACCGTGGCCGAATCCTAATAATGGAAACACGATCTCATATTCCTCTTCATCCCCAGGAACATATGTGGGTCCTCCAGGAGGAGCAGGAGGTGGTGGATGTCCTCCAGGAACACCTATCATGCCAAGTCCAGCAGACTCCACTAACTCGGGTGAAAACCTCTACACATTGATAAACTCAGTGCCACCAGGAGGAAACAGATCCAGTTTTACTATGGGTCCGGGGTCAGATGGTCCAATGGGAGGACTGGAGCCACATCATATGAATGGATCATTAGGTTCAGGTGACATCGATGGACTCACAAAGAACTCCCCTAATAATCTGAGTGGCCTGAGCAACCCTCCAGGAACACCACGAGACGACGCTGAACTGAGCGGAAGCTTCCTGCACTCCTTCCAGAATGAAAATTACTCACCAACAATGACAATGAGTGTGTGA
>TCONS_00031962
ATTTTTCTGTTCAGGGTAGCAGGAGCTGGCAGACCGTGGCCGAATCCTAATAATGGAAACACGATCTCATATTCCTCTTCATCCCCAGGAACATATGTGGGTCCTCCAGGAGGAGCAGGAGGTGGTGGATGTCCTCCAGGAACACCTATCATGCCAAGTCCAGCAGACTCCACTAACTCGGGTGAAAACCTCTACACATTGATAAACTCAGTGCCACCAGGAGGAAACAGATCCAGTTTTACTATGGGTCCGGGGTCAGATGGTCCAATGGGAGGACTGGAGCCACATCATATGAATGGATCATTAGGTTCAGGTGACATCGATGGACTCACAAAGAACTCCCCTAATAATCTGAGTGGCCTGAGCAACCCTCCAGGAACACCACGAGACGACGCTGAACTGAGCGGAAGCTTCCTGCACTCCTTCCAGAATGAAAATGTGAGCGCAAACACATTAACATGCTACATAATAATACTGGGTTTTAAATGGGTTTAAAGAGTTTcccaaaaaaaa
>TCONS_00031963
CAATCATGCGGACGGGGCCCCGCCCATAGTTCATGATCTGGCTGTGGCAGGGTCGGTTGAAGCGGATGGGGTCAGAGGCGGGCTGCACGTTGACAGCTGGAGCATAAGGAAGCATCGCAGTCAAGCTGGCAGACGCGTTTATTTTCAGCCACAGACATGTTCGCCAAAGGTAAAGGGACCGCGGTGCCATCGGACGGGCAGGCTCGGGAAAAaTTGGCATTATATGTCTATGAATATTTGTTGCACGTGGGAGCTCAGAAATCCGCACAGACGTTTTTATCAGAGATAAGATGGGAGAAGAACATAACCCTGGGTGAACCGCCAGGCTTTCTGCACTCTTGGTGGTGTGTGTTTTGGGACCTGTACTGCGCAGCACCCGAGCGAAGGGACACATGTGATCACTCCAGTGAAGCGAAGGCCTTCCACGACTATAGCGCAGCTGCAGCACCAAGTCCAGTACTGGGCAACTTGCCCCCCGGTGATGGGATGCCAGGCGGCCCTATACCTCCCGGATTCTTTCAGCAGGGACCCCCTGGTTCCCAACCCTCCCCTCACGCTCAGCTCCCTCCAAACGCTAACATGATGGCCGCGCACGGACAGCCATTTATGTCACCTCGCTATGCTGGAGGACCTCGACCGCCCATGAGAATGGGTAACCCGCCTCCAGGTGGACAGCCTTTACCTCCAAATATGATGGACCCTACAAGACCAACAGGCCATCCAAACCTGGCATCCATGCAGAGAATGAACGCTCCACGAGGAATGGGCCCAATGGGACCAGGACCACAGTCTGACCCATGGTTATCACTACAGAACTATGGTGGAGGAATGAGGCCTCCAAACTCTATGGGGCCGGGAATGCCAGGAGTAAACATGGTAGCAGGAGCTGGCAGACCGTGGCCGAATCCTAATAATGGAAACACGATCTCATATTCCTCTTCATCCCCAGGAACATATGTGGGTCCTCCAGGAGGAGCAGGAGGTGGTGGATGTCCTCCAGGAACACCTATCATGCCAAGTCCAGCAGACTCCACTAACTCGGGTGAAAACCTCTACACATTGATAAACTCAGTGCCACCAGGAGGAAACAGATCCAGTTTTACTATGGGTCCGGGGTCAGATGGTCCAATGGGAGGACTGGAGCCACATCATATGAATGGATCATTAGGTTCAGGTGACATCGATGGACTCACAAAGAACTCCCCTAATAATCTGAGTGGCCTGAGCAACCCTCCAGGAACACCACGAGACGACGCTGAACTGAGCGGAAGCTTCCTGCACTCCTTCCAGAATGAAAATGTGAGCGCAAACACATTAACATGCTACATAATAATACTGGGTTTTAAATGGGTTTAA
>TCONS_00031964
GGGACCGCGGTGCCATCGGACGGGCAGGCTCGGGAAAAaTTGGCATTATATGTCTATGAATATTTGTTGCACGTGGGAGCTCAGAAATCCGCACAGACGTTTTTATCAGAGATAAGATGGGAGAAGAACATAACCCTGGGTGAACCGCCAGGCTTTCTGCACTCTTGGTGGTGTGTGTTTTGGGACCTGTACTGCGCAGCACCCGAGCGAAGGGACACATGTGATCACTCCAGTGAAGCGAAGGCCTTCCACGACTATAGCGCAGCTGCAGCACCAAGTCCAGTACTGGGCAACTTGCCCCCCGGTGATGGGATGCCAGGCGGCCCTATACCTCCCGGATTCTTTCAGGTGGGTCACCACTCCTACCCAACCCCTTTAACCCCTTCTCCACAAACCAACATCTAACCAGCAATCCTCAGGTGCACAGACACGTGCCACTAGTTCACAGAGGAACCATTATGCCACACTCTCTGGTCATCTGCCAAACCTGGCGTCTGCAGGGAACTGCTCTGATTGCGACCATTAGCCACTAATGGCAGGCAGGGTTATTCGCGTTTTCCTCTCCCTCTCGTTGTCCCGCTGAGCTGCGCTAAATGCGTCAGTGATGCACCTTCAGCAGCAGAGTTAACACTTTATCACTCGGGAGTTTTCTGAGAGAATGACTCATCAAAATATCTGAATAAGTTCTTGGAAAAGGTTTAAGGACGAAAGGATTGTTTGTAGTGACCTTATGGAAGGAAGCATTTCAGAGACGAGCCTTTTTCAGGCCAGATGGAGTCGTGACCCTCTGAGGGCTTTTGCGGGAATGCTGCAAAGCACAGATTCTCAGATACCGAGTGCCAGAGAATATGAAACTGGTCTATGCGAGTCTTGAAAACATGTGGATATGAAGGAAAACCTGAAACATTTGTGGCTTTGCGGTCAT

Function

symbol description
ssbp3a Predicted to enable single-stranded DNA binding activity. Acts upstream of or within peripheral nervous system neuron axonogenesis. Predicted to be active in nucleus. Is expressed in Rohon-Beard neurons; trigeminal ganglion; and trigeminal placode. Orthologous to human SSBP3 (single stranded DNA binding protein 3).

GO:

id name namespace
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003697 single-stranded DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-484 Predicted to enable single-stranded DNA binding activity. Acts upstream of or within peripheral nervous system neuron axonogenesis. Predicted to be active in nucleus. Is expressed in Rohon-Beard neurons; trigeminal ganglion; and trigeminal placode. Orthologous to human SSBP3 (single stranded DNA binding protein 3).

Ensembl:

ensembl_id ENSDARG00000058237

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031959 False 2013 mRNA 0.48 18 10934479 11027258
TCONS_00031960 False 1329 mRNA 0.54 18 10935273 11027365
TCONS_00031961 False 1296 mRNA 0.53 17 10935273 11027410
TCONS_00031962 False 513 mRNA 0.48 7 10936781 10943093
TCONS_00031963 False 1356 mRNA 0.53 17 10936799 11027365
TCONS_00031964 True 925 lncRNA 0.51 5 10956221 11027191
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Neighbor

gene id symbol gene type direction distance location
XLOC_016198 cdcp2 coding downstream 27625 10881168 ~ 10906854 (-)
XLOC_016199 CR450845.2 coding downstream 29300 10905062 ~ 10905179 (-)
XLOC_016197 cdc7 coding downstream 56714 10863942 ~ 10877765 (-)
XLOC_016196 rpap2 coding downstream 113426 10790875 ~ 10821053 (-)
XLOC_016195 rpl5a coding downstream 230858 10687276 ~ 10703621 (-)
XLOC_016201 fam151a coding upstream 41645 11069055 ~ 11082914 (-)
XLOC_016202 lrrc53 coding upstream 55901 11083311 ~ 11120220 (-)
XLOC_016203 slc44a5a coding upstream 189404 11216814 ~ 11468654 (-)
XLOC_016204 BX901918.3 coding upstream 303314 11330724 ~ 11331316 (-)
XLOC_016205 BX901918.2 coding upstream 309630 11337040 ~ 11337983 (-)
XLOC_016181 BX470264.1 non-coding downstream 1071091 9862833 ~ 9863388 (-)
XLOC_016178 NA non-coding downstream 1186263 9746437 ~ 9748216 (-)
XLOC_016176 CU633992.1 non-coding downstream 1246294 9688055 ~ 9688185 (-)
XLOC_016169 CR385076.1 non-coding downstream 1527804 9406558 ~ 9406675 (-)
XLOC_016208 NA non-coding upstream 529565 11556975 ~ 11558124 (-)
XLOC_016211 CT573467.1 non-coding upstream 733416 11760826 ~ 11767204 (-)
XLOC_016213 CT573433.1 non-coding upstream 948851 11976261 ~ 11981305 (-)

Expression

Expression of XLOC_016200(ssbp3a) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Expression of XLOC_016200(ssbp3a) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network