XLOC_016212 (abhd3)


Basic Information

Item Value
gene id XLOC_016212
gene name abhd3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 11848510 ~ 11912347 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031985
ATTTCTCTGGGTAGCACATTGAGTTGCTCCGCAGAGCGCCACCCATCTCCCCGTGTCTGAACTCCTGTCTCCGTTCACCTTTGCATTTGGACGCGCATCCTTACATCCAGGGGCAGCCCGAGCGTTTCATTATCCGGAACCGTGGGTTTTAAAGGGCAATGATCTCACTGGAGcttaatttcaatttatttacgaGTGACCTTTCACTTTACCTCAAAAACCAAGTTAAAGTCGGACTATTCGGGTCTGGGGTTGGACTATCGGTAGTTCTCGGGTTCAGCGCCGCTTATGCCTGCTACTACCTGATATCTGTGGCCAAGAAACCTCTACTGATAGCTGGAGGAAATAAGTTTCATCAGTTCCTGAGGGACCAATGCCCCGTGGTTTCAGAGACATACTACCCCACTTTCTGGTGCTGGGAGAGCAGAGTTCAAACGCTGCTCAGACCCTTTGTGACTGCGAAACCCTGGGTCAACTACAGAAATGAGCTCATTAGAGCACCAGATGGAGGCCAGATCTCTCTGGATTGGTTTGACAATGATGACAGTGTGTCCCACCCGGACCAGTCCACGCGACCCACTGTGCTGCTGCTCCCAGGACTCACAGGCACCAGCCGCGAATCCTACATTCTGCATATGGTACAGCAGAGCCGGGATCTAGGATACAGaTGCGTGGTGTTCAATAACAGAGGCGTATCGGGTGAAAAGTTATTGACTCCAAGGACTTATTGTGCAGCCAACACAGAGGATCTGGAAGTAGTCATTGAGCATGTCCAGCGGACCATTAACAAAGCTCCGCTCATGGCGGCTGGGGTTTCTATGGGCGGGATGATGTTGGCGAACTACCTGGGTCGTAAAGGCTCTGAAGTGCGCTTGAAGGGTGTGGTGGTTTTTTCGGCAGGCTGGGATGTGTTTGAATGCACAGCATCATTGGAGAAACCCCTGGACCGATTTCTCTTCAACTCTTACCTCACCAGCTGCCTGCAGGCGTCCGTGGACCGTCACAGAACCATTCTTGAAAAGAAATACGACATAGACCATGTGATGAAGGCTAAAACTATACGAGAGTTTGATGAACGTTTCACGTCCATCATGTTTGGTTATCCATCCAATGATGACTACTATAGAGACGCTAGCCCGATTCACAAGATCAAGTCTGTGCAGGTGCCAATGCTGTGCCTCAACGCAGCTGATGATGTCTTTTCCCCCAATCACGctATTCCAGTGGAGGCCGTGAAGCAGAACCCCAATGTGGCCCTCCTCATCACCTGTCATGGTGGCCATATTGGCTTCCTGGAGGGTCTGTGGCCTCGGCAGAGCACCTACATGGACCGCGTTTTTCGTCAGTTCACCAAGGCTGTGTTTGAGAATGGCAATGGTCTGGATGATCTCTACTGACCCTCTCATTCCATTCCCTCAACAGAACAGctgtgagcaaaaaaaaaaaaaattattcatttccAAAATGACAGGCACAGGTTCACTTGAAGGccagaatagttttttttaagtctagtcatatatttattgaattattttagtagtgttttaactttttgattttcATTTATTGAACAAAAATGATTCTTTGACTTGCACATTTGTTCATCCGTCCATCAGTGCACTTATTTGTTTCTAAGCTGCATTCATCTGTGACTTGCATGCGTGTGTATGACTCTCTTAATTATGTAATTTTATATATGCTTTAACTCTGAAGGGCATGATAAACCATCCAACCAACTGAAGCACTTATTTAGATGACATTACTCAACATTATGTGGAGAAGTGTACTAAATCAAAATGAACCTAAATCAAATCAGcactaaagaaaaataaaaaataagaatatgtagctgcagaaagaaaatgaagcCTAATTTAGAATAACTTCATTACTGTAATGCAAAATAGTCTCGTTCCTGTTTCATAATGCAGTGCTAAGTATCATCGTGGATATATTTATGGAAtatgggcgacatggtggctcagtggttagcactgccacctcacagcaagagggtcactggtttgagtcccaactgagtcagttggcatttctgtgtggagtttgcatgttctccccatgttggcatgggtttcctccacagtctaaagacatgtgctataggtgaattgaataaactaaattggtcgtagtgtatgtgtatgaatgagggtgtaaggatgtttcccagtactgggttgcagctggaagggcattccctgtgtaaaatatatgctggataggttgcagcgacccctgatgattaaggggactaagctgacggaaagggaataaattaataaatacactgtCAAACCCAAATGTTAAGGTAATTCAAACCATTTGAgcaaaccgattgctacaaaccatttgttCAAAAACTTATCCTAATGagaactgtgaacttaatctatttgagtaaacgaagcaatttgagcacagtaacccctgattaatgaagagaactcaaactaagtactgtaaaacccagtaagttaaggcaaatcaaaccgtttgagaaaaccaATTGCAGCAAACCACTTGAGTTAAGCTAATTTATATGAgtacttactccatttaagttgaagtaatgaggtatttaattaactctttgccttcaacactgagttaaaaactcttttcaaatgagtaaaatttactttcagtacattttgagttaactactctcattttatttgataaagttgactgttgggttttacagcgtATTTGTAGAATTATTCCTCCAAAATGACTTTACTCATCCTCTACATGTtttaaacctatttgagtttcttgtGGTCAacacaaataagatattttgaggaatgtttggTAACCGGGAGCTATTTTCTTTCATAGTATTATAAAAGTAACTGGCTATCAgttaccaacattttttaaaacataatcttTTGCATTTACCAGAAAAAGAAAccgcatgagggtgagtaaatggtttatttttgggtgtactatcttTTAAGATAATATATATCAAAATAGTATCAGGGTGGCCCAGTGGCTCATGGTTaacactatcgcctcacagcaagaagtgtgctggttcgagcccaagctggaccaattggcatttctgtgtggaggtgtgctgattcgagccccggctgggccaattgtcatttctgtgttgagtttgagTATTTTTTTCCATGTCCACATGGGTTTGCTCtgatttccctcacagtccaaatgcatatgctataggtgaattgaatgtatgtatgggtgttttccattgttgggttgcggctggaagggcatctgctgcgtaaaacatatgctgaatatgttggcggttcattccattgtggcgacccctgattaataaatgattaagcCAATAAGAAAATGATTGATCGAATGTCCAAAGTGTGTGAATGCCAGAGTGtatgggtggaagggcatccgctgcgtaaaacatgtgttggataagttggtggttcattccgctgtgacgatccctgatttaaaaaaaggattaagccaaaggaaaataaataaatcaatgaaaataatattaGCGAAATATTTACAATTGAAGTTTTTTATGAAAAGATTTTTGGTTAGTCAGGGTGGTAAATATATCTTTTAGgccatttagtttttaaaacatggAACCTCCAAAGGAACAgaatttatcagaaaaaaaacataagagcttctttaattgtcattaaataaagaaaaaaataaagaaaacagctCAATACCTTTGTTAATAGATTTAGTCAAATTGCACTATATCAAATTGTGATTGTAGCCGTGAAGGTCAAGGGCATTTGTGcagttgtttttaattataaaaaaggaTTTCACCTAAactcttccaaaaaaaaaaaaaaaaacgatgcagTGAAGCAAGGAGGTCATATTCCAGCTCCACTTTTACCTTCTTATGTAAACATAAAAGATTAATTCAGTGTTTATCATACCATGTTTGACCTCCTACATGTCAATGACCATTTATCCTAGCAGTTGATATGCTGCACCAAGGCCTTATCAGTTTGGTCCATTCTAGTGTTAAAAGGAAGCTTTATATATTATTATCCGTATTTTCACCATGTATCTTACATGTCTGTTGTTTTGTAGCCCTCAGGACTGACCCCAATTTCTCTTTTTTGTTTGAGTTTCATGTAAGTGTCAtgttagtttgcatttttaaGGCAAGAAAAGATTGTATTTACCATATCACGGTTTTTAAGTTTCCAAAAGAATGTACCACACGCACTTTGTTTCTCATTCATTACTTCAATGTTGACACTGACTACTTTGTGAACGATAAATGAATCATTTTGACTTGGAATGTgaaatttgttgttgttgatggcATTAAACCTGTGGAGGTAAAGTGTGTTATTTTGGACTTAACGAAAGTGGCTTCAAGGATTCTGTGAATGTGAAAACGACTTGAGCTACTGTTTGTCTGAACATTGTAAAATATGTTACATGCTTTTAATATATGCTTTAAATTCACTTAAGACTCAAaatgctttttatattaatgcgCCAATGaattcttaaagagatagttcaccctgaACTGAACATGTACGATGTAcctcagactttttttttcctaCAGTAGAACATCGAAGTACATTTTTGCTGAAACTCTGGTCTTTGGTAATTCACAGATTGTCAGTCAGTAAATACCATCGGCACTTTAAGAGTCAAACAATCATGAATATGCAGGATATTTTATTTGTGAcattacccagcaggcacacaatgtcatatgaTACTCTAGGTAGTTGGTTATATATTGGTTGCGACTTCTTAACGTCATAATGTGATGTTCATACAACGCCAAAGTCTAACATCAATATGCGCTGATCTTTGGTTTTTATTTGTGGCATTAACTAACAAAAATTCTAAATCATATTAACATCATAATGTGAGGTCCATACAATGTCAAAGTGTAACATCAGTAGACGCTgatctttggttggttttaggttgtggaACTAACCAACCAAAGTTTAACATCATCTTAACATCATAATGTGATGTCCAGATAACGTCAGAGTTTAACATCAGTAGACGCTgatctttggttggttttaggttgtggaATTAACCAACCTTAGTTTAATGCCGTTTTACCATCATTATGTGACATCCATATGACGTTAAAATGTAACAATGGTAGACATTGATCTTTCGTTGGGTTGAGGTTGTGGAATTAACAAACCAAAGTCCAACATCATATTAACGGTATAATGGGATTTCCATACAATGCCAGTGTAACATCAGTCGACGCCGATCTTTAGTTGGTTTAAGGTTGTGGAATTAACCAACCAAAGTCCAACGTCAACATAACGTCATATTTTGATTTTCGTATAACGTCAAAGTCTGACATCAGTAGACCCTGATCTTTGCTTGGTTTAAATTTGTGGCATTAACTAACCAAAATCTAAAATCATATTAACGTTAAAATGTGATGTCCATACAGATGTTgatctttggttggttttaggttgtgaaACTTACCAACCAAAGTCCAACGTCATCTTAATGCCATAATGTGATGTCTATTCAATTTCAAAGTGTAACAAAAGTAGATGTTgatctttggttggttttaggttgtggaATTAACCAGCTAAAATTGTACAATGTCAATCTAATGTTCTGTGCCTGCAGGCTACACTGAGGTCttaaaatttacaaattaagcttaTGCACAgaactggaatattgcatttctataaacatttgcaaaaaaagcactattttcatccaaaaaaaaagcaaatacaaCAAAACGGTCCCTTCCTAATAaattggcaccaaatatcaaaaagaaaaatggaattttACTTATggtaggagaagccactgtgggcctttttcttatataataaattacttgcacctcagaagacaaaaaCGAAATTAACTGAATGAAATTATAATTGGTTTTTGGAGGCTCGAGACTACTCTTTAGGAGTTCAGTCTCTCAAATAGTTCTGCTAGAtgataatactgaaccactttaaAGAGAGACCTAAAGCTAAAAAGTCATTTTAGAATGTttagaccaaaacaacatttcagatatcGGGCAATGTGGTTTGACCACTAGTTTGTCTATTAATGGCATTCCATTGTGCCCCAGATTTGACAGAAAGTGAAGTTTAtctataaacaaatttcgagagaatcacatgcttatgattgttcacagctgttccaactttagctaatgactgattatcctatcagacgatccttaactcaatataaataaccagacttttctcatcttaatatctttgtcttgaagaaaccctcccacccaaccctacttttcCTCCTTTCAAACaggtgacacggtggccagtgattagcgctattgcctcacagcaagaatgccagtGGTTTAATTCCCTTtcaaaccaggcaacatttctgtgcggagttttgctcgttctccccgtgattgtgtgggttttccccgggtcctccgttttcctcccacagtttaaaaacaagcaccctaatcaattaatccaaaatattttagccaaactctgagtacaccttttcCGCATCCATATCCGACACTTAGCTACtataagcaggagggggagtcattgcgatctacctaagctcaaactcccctctcgccttgcaacaggagggagcccagggctcgaggatcttataagcttagagctctctcccgggacagcgcgccaaacaagctttattattaatcatcagctaagtgtgaactcttgaaagcttttttatgatgataatattatcttttaaaactaaatcacatgacttttttatgcTGGTGAATGTGTTTatggtaaataaacaaacaaaaatatgattgatGTGTTTCCATTGtactttatgcacattttttcttacataataaaaagtttatcctactcaaaaTTAAGGAGCGTATTGGCATttccatttagattttttttttttttaatgcgatagttcaaaatgcgcataaaaatctgtgtatgaaagtcagtggtggaaaaagtactgaaaaatcttACTCAAGTAAAAAAAAGGACCATTCCTTGCccaaatgtagtgcaagtagtcaaagtatctgttgtaaatattactcgaagtatgagtaaaaagtagtcctttcaaaaagtactcaagagtagtgagtagtgagtattacactttgaaaagctgatacatttacatgtaatttgtgtatgtgtgtaaacgtaacattctgtagtgtattTAATTAtggcccagcaggcacacaacgtcataagctcatattaggttagatttaggttgtgatgtcaggtgaccaaaattctatgTCTAACcggcgtctaaggacaacattattttgacgttCAATAATGatatcaaatgacgttgatatttggttgattttaggttgtgttagtgACCATCTATAGCTTTAATCTAACctcatattaatgtcttatgatgttgtgtgtctgctgggaaatGTTTCcatctattattattttcattaaccCTTTTTCACACAGGTCCAAAACCACATCAAGCAAGCAGAAAAACTTTTTATGCGTGTGAATTCAGTGATTTGCatgcaaaatatataattttttaatgttgttgtttgtttgtttttgactcTTAAGTCCTGGTAGCCATTttcttgcattttatgaatcaccctagaccagtttcagctaaaatattatttaatgctaCAAAGTCACCTACTAACCTAAATATCTTTTGAGGTTCgattgaactatctctttaaattaggctatataaaaaaacaagagaaaaaaatcttGAGCAGCCATTATTTGTGTGAGAATGACAGGAAGagttcaaaacaaaataaaagatgtACGTATGCCATTGTGATTTGACGAGAAAGCTGTAAATAACTATGCCCAAATATAACTTTAAATTTTCATAGAAGAATGACAAGATGTCCCAAACTAGATCTTATTAAAACGGCCATGCGTTGTATATTGACCATCGTCTGTTTTTTCTTATGGTGCTGCTTCATATTGCTGCTTCTGTGGACTTTTAAAAAAAACGCTTTCCTCTCTGCTTTCCGTCCATCCTGTTTCCGAGTAGCATGTGTCACTGTTCTAAGTGTCTTGAGTAACTGTACAGCCATGCATTGCATAAACCTGTAGCACAACAGACATGTTTTTTTCCTCCCCAAGATGTCTTTCCTTTTATAGATTTATAAAAGGATTGTGTAATTAACATGTGCAGCAATACGATTTTAAGACAAGATTTATGTCTCTGTAGAATAAATATATGCACATGTACTTGGATTATGAGTGCATTTGTGGTCTTAAATAAATGATGGAATTAAACTGTA

Function

symbol description
abhd3 Predicted to enable carboxylic ester hydrolase activity. Predicted to be involved in medium-chain fatty acid biosynthetic process; medium-chain fatty acid catabolic process; and phosphatidylcholine metabolic process. Is expressed in brain; intestinal bulb; lateral line ganglion; and otic vesicle. Orthologous to human ABHD3 (abhydrolase domain containing 3, phospholipase).

GO:

id name namespace
GO:0051792 medium-chain fatty acid biosynthetic process biological_process
GO:0051793 medium-chain fatty acid catabolic process biological_process
GO:0044255 cellular lipid metabolic process biological_process
GO:0046470 phosphatidylcholine metabolic process biological_process
GO:0005575 cellular_component cellular_component
GO:0008126 acetylesterase activity molecular_function
GO:0047372 acylglycerol lipase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004623 phospholipase A2 activity molecular_function
GO:0034338 short-chain carboxylesterase activity molecular_function
GO:0008970 phospholipase A1 activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-90 Predicted to enable carboxylic ester hydrolase activity. Predicted to be involved in medium-chain fatty acid biosynthetic process; medium-chain fatty acid catabolic process; and phosphatidylcholine metabolic process. Is expressed in brain; intestinal bulb; lateral line ganglion; and otic vesicle. Orthologous to human ABHD3 (abhydrolase domain containing 3, phospholipase).

Ensembl:

ensembl_id ENSDARG00000018809

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031985 True 8371 mRNA 0.38 9 11848510 11912347
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Neighbor

gene id symbol gene type direction distance location
XLOC_016211 CT573467.1 coding downstream 81306 11760826 ~ 11767204 (-)
XLOC_016210 MFF coding downstream 185587 11651176 ~ 11662923 (-)
XLOC_016209 impad1 coding downstream 199779 11633253 ~ 11648731 (-)
XLOC_016208 NA coding downstream 290386 11556975 ~ 11558124 (-)
XLOC_016207 penka coding downstream 335691 11508691 ~ 11512819 (-)
XLOC_016213 CT573433.1 coding upstream 63914 11976261 ~ 11981305 (-)
XLOC_016214 kcnt2 coding upstream 106994 12019341 ~ 12079718 (-)
XLOC_016215 gpr158b coding upstream 192042 12104389 ~ 12243213 (-)
XLOC_016216 CR376724.1 coding upstream 312076 12224423 ~ 12224539 (-)
XLOC_016217 dpp6b coding upstream 494366 12406713 ~ 12632761 (-)
XLOC_016205 BX901918.2 non-coding downstream 510527 11337040 ~ 11337983 (-)
XLOC_016204 BX901918.3 non-coding downstream 517194 11330724 ~ 11331316 (-)
XLOC_016199 CR450845.2 non-coding downstream 943331 10905062 ~ 10905179 (-)
XLOC_016218 NA non-coding upstream 791610 12703957 ~ 12704384 (-)
XLOC_016219 BX908750.2 non-coding upstream 907652 12819999 ~ 12821531 (-)
XLOC_016220 NA non-coding upstream 1271880 13184227 ~ 13216269 (-)

Expression

Expression of XLOC_016212(abhd3) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.

Expression of XLOC_016212(abhd3) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.

Co-expression Network