XLOC_016236


Basic Information

Item Value
gene id XLOC_016236
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 14394120 ~ 14426667 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032023
CTTCGCCATAGTGTGGTTAGTAATTACGCGACCCTCCCACACTTCCATTCTCCGTTCAACGGCTGTCCTCAGCATCCCCTCAGTGGTGATGGCGTGTGTGGATGCTGCTAATGCGGCGGAGCCTGGGGCCTAACCAAACCGGTTAACGTTACCGGGGAACTCAAGAAACGAGGACGTGCGGTGCTGGGCATTATGAGCCTTACCTTCAACGGCCGGCTCCCGGATCACTGCTGTATCTCATGTCAGGGTGTTTGTTCGCGTGAAACCAAGGAATGAAGTGCTGCAACCATGATGCAAGGACTGAAAAAGCGTACCCGAAAGGCCTTCGGGAtacgaaaaaaagaaaaggacagTGACTCCACtggatCACCAGACAAGGAAAAATCAaaaaaaacTAATGGGGCTCCTAATGGCTTCTATGGTGAGATTGACTGGGATCGATATAACTCTCCTGATGTGGATGATGAGGGGTACAGTGTTAAACCTGGAGAACAAGGGG

Function

GO:

id name namespace
GO:0048468 cell development biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0030182 neuron differentiation biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0048666 neuron development biological_process
GO:0048699 generation of neurons biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032023 True 499 lncRNA 0.51 5 14394120 14426667
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_016235 sgip1b coding downstream 3493 14276639 ~ 14390627 (-)
XLOC_016234 tctex1d1 coding downstream 122037 14207559 ~ 14272083 (-)
XLOC_016233 CU927934.2 coding downstream 364959 14021956 ~ 14029161 (-)
XLOC_016232 CU927934.1 coding downstream 383462 14009630 ~ 14010658 (-)
XLOC_016231 CU927934.3 coding downstream 384592 14007938 ~ 14009528 (-)
XLOC_016237 NA coding upstream 12318 14438985 ~ 14440380 (-)
XLOC_016238 pde4bb coding upstream 17609 14444276 ~ 14587224 (-)
XLOC_016239 CT583708.1 coding upstream 63275 14489942 ~ 14491843 (-)
XLOC_016240 NA coding upstream 87499 14514166 ~ 14515594 (-)
XLOC_016241 CABZ01026681.1 coding upstream 228467 14655134 ~ 14656669 (-)
XLOC_016230 NA non-coding downstream 389178 14002395 ~ 14004942 (-)
XLOC_016228 NA non-coding downstream 516599 13875695 ~ 13877521 (-)
XLOC_016242 NA non-coding upstream 237982 14664649 ~ 14676427 (-)
XLOC_016243 NA non-coding upstream 310376 14737043 ~ 14831123 (-)

Expression

Expression of XLOC_016236 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.

Expression of XLOC_016236 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Co-expression Network