XLOC_016537



Basic Information


Item Value
gene id XLOC_016537
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 33271841 ~ 33281735 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00032556
CTGCCCCACAGGTAAGCGGATGAGGTCTGCAAGCAGAGTGGTACCGTCCTGCAGAGCGGCCGGAGGCCTGAAGGCGGGCCTGGGAAAGGAGCTGCATGCTGAGGCTCATGAGGAGCTCTCCGCCTCTCACGGCAGGGCCTCTGTCAGTCAGCACGGGCCCCCTGCAGCCCACAGACCTGCCGGGACACAGCACACACAACACACAGGTGTCTGAGGGTGCTTGTTTTAGGCAGAGGTGAGAGCTTCAGCCTGAGCGACATGAGGAAAGAGTTGGACAGACCACGTCATCACCTGCCCAGGGTCACATCTACACTCGTATCTCCATCTATGACTGCTGATCCAACAAGGGCACAACGTGTACTTCCTCCACCCAGATTTCTGCATCTTAGTCATACCATCATTTGGTTATGCAATTTCATGGGGAGCATTAGGGAAACTGTTTTAGCCCAGGAGCCGTAATATTCTGGATGCTGCTTTGGGCAACAGGCACAGAGAGCATTTCCTCTATCAACACTTTAACACCACACATGCTTCCGCCGTGATGATTCACATCACTCTAGAGGGAAATTCAGGAAACTATTATAAAAATGCTGCTGAATTTTTGCTGTTCTGTACTTTGCATCAAACTGGTCTCATTTAGAAATTAATCAAAGCGGTGATGACTGGTGTGCAAGcaaattatatttcaaaatgttgcaaaaattcTGATTTGTTGCTGTATTATGATCAATTATTACTGGTGttcaatcattattattattattaatattatattttgatgtgatatttatattttgttttcgtATCTTCATGTTTTTGTGGCTATCGTAATACATTTAACCTTTTCAAGGCTTTTTTTGATGAATGGAAgtatcaaaacattttattttaaatagaacCTTTAGTAACATTATAAATGCTGTCACTTTTGACCAATTGAATGTATAAAAGTTGTATGGTACTTTTGAATGTTAAGATATCATGTTTTCCATATATAGCAGCATAACAATTTTTAAGATTGATCATAATCAGGAATGATTCTTTGGTGTTTCAGACAATTATCACATTATAAATTTCAGAAACTTATGTGAAACTGAAATCTACAGAAATAATGATACAAGTTCAACTTTGAatcacacaagtaaatacattaaGCAGGCTCATGCAAATGCtcacattatatttaaatatgcaaattttcattattaaaaaaaaaaaaaaagttacattattGGTAATCGGACACTGCATCCATTATAATTGACAGGGCATGTCAGgcatgtgttttgttgttgttgcttccAGAGCATTTTACAAAAATTAAAGCATGCTGTCCATGATGTTGGTCTTTTGTCAGCCATTAAAATGGCAGTAAGACGCCTTttgtaattaaaacaaacaaac

Function


GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048741 skeletal muscle fiber development biological_process
GO:0048747 muscle fiber development biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0021546 rhombomere development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0001756 somitogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0021594 rhombomere formation biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0014904 myotube cell development biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0048869 cellular developmental process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0071696 ectodermal placode development biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0003007 heart morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0032525 somite rostral/caudal axis specification biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0030902 hindbrain development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00032556 True 1404 lncRNA 0.39 2 33271841 33281735
Loading

Neighbor


gene id symbol gene type direction distance location
XLOC_016536 NA coding downstream 46925 33220032 ~ 33224916 (-)
XLOC_016535 NA coding downstream 229682 33037373 ~ 33042159 (-)
XLOC_016534 prpf4ba coding downstream 445733 32812402 ~ 32826108 (-)
XLOC_016533 NA coding downstream 468113 32801765 ~ 32803728 (-)
XLOC_016532 NA coding downstream 485309 32783441 ~ 32786532 (-)
XLOC_016538 ccdc24 coding upstream 140676 33422411 ~ 33455274 (-)
XLOC_016539 b4galt2 coding upstream 195031 33476766 ~ 33676494 (-)
XLOC_016540 BX548164.1 coding upstream 288187 33569922 ~ 33570039 (-)
XLOC_016541 atp6v0b coding upstream 399464 33681199 ~ 33687214 (-)
XLOC_016542 NA coding upstream 500924 33782659 ~ 33785190 (-)
XLOC_016529 BX323559.2 non-coding downstream 604576 32667132 ~ 32667265 (-)
XLOC_016543 NA non-coding upstream 561667 33843402 ~ 33926779 (-)
XLOC_016546 NA non-coding upstream 825095 34106830 ~ 34107985 (-)
XLOC_016552 NA non-coding upstream 2333660 35615395 ~ 35621867 (-)

Expression


Expression of XLOC_016537 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
End of interactive chart.

Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_12696326_12707951 NA coding CI01000004 null 12694377 ~ 12707996 (+)