XLOC_016662


Basic Information

Item Value
gene id XLOC_016662
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37813663 ~ 37815373 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033385
tGGGTGCAGCAACCGGAAGCGTTTTTCCCTGTAGAAACACGTGGTTTATTAGTAGATAAATACGGCCCCATGCCGCTCTTACATCCTTTCTGCTCGTAACGCTCAACGGCGTTGTAACGTTTTCAAGTAGCCtagtgataaaaatatatattttttttctttgcatccacgtttttgttttaatatttattttaataacttgttaGTGTTGAGATATACATTCCAACTTAAAGCGTTTAAAGGACGTGGAtcaccttttttgtttgtttaccgcAGTTTTTTTTACTTGCCATCAAGCTTCCACATAATCTTCCCGCTTCGGTAAACGCATGTAGGCTCTAACTAAAGGGTGTTTTCAGTCATACCAGTGTGAAATGGACGCACCAGATATTTTTCGGTGCATCTGCTTCTAACTACATCCAGATGCCCGAGTCTGTATCTTTGCTGTAAAGATTTAACTTAACGTTAGCCCGAACTGCCTCTGCTCAAACCAGACATGATGATTTCGCAGTCCGTGTTTCACCTGAAGTCTAATGATTACAGCCCTACTGCACTGACTGGTTGAAGCAGCGGAATAAAGCCTATGTTTTAGGTTTTCTTTCTCGCAACATTTCCCTAATTTCCTATGTTTGTGTATCTTCTTTACAGGAACCCACGTTTTGCAAATGGAGGTGAGCTGAAGTCACGTGTTTCCTCGTGCATTTGGACTGCTTGTTCGTGTTTCTGTTCGCCAGTAATGTGGTCAGGTTGTTTCTAAAAATTGAGCtatagttggttttatattagcacattCGTTTTTTTAACTGAcaacctgacttttttttttttttttttttttttcaagctactTTTAATAATTGGTCTTAAATCGCATGCAAATGATTAAGTCAACATTTGATTGACTGAAcgtgtactttgatagtcattgcctGCTAATGTTTTCCCCATCTAGAATTTGTAAATTTTTCTGAAAATATACTAAAAGTCTAAATGAACGTAAAACCagctttaatgtttttaaaaagcgttttAGCCTTCATAATTCTGCAGGAACATGTGTATTATGAGAGGTTTTGTATTGaatggatctttttttttttttttttacaaaaaaagtatttatttttttattaatcgtGTATTAGTTTGTGGTAAActttatttgttgaatttatttaatttttttaagtagtaAGTTTCTAATAATATTGGTTATTTGACTTGCCATATTCACATTTTACTACTGAATAACGAAGTTTTATTAAACTAACTTGAATCACAATTGTGTAGACTCGTccatttgttgcattttttttcttggtcTCTGCTTGGAAGACAAATGTAAGCTGATTGTCACAAATGATTTGAAACCGCTTCAATAAATGTACATTGATTCGATTCATTTCATGGtcttcatttttataaattgtggATTTTAATTTGCTTGCAAAAACGTTTATTTAGGATCAGTGTTGGTGGTAACATCACAAGTAACGAGAGTTGCGTAGAGTTACTTCTAATTAAAGTgatgcattttaaaaagtaattaagttGCTAACTAGTTactttaa
>TCONS_00033384
CTTTTCTATAATTCACATCAAGTCATAATTAAACGAGTCTTAACCagttaataataatgctaataaatgtGGGTGCAGCAACCGGAAGCGTTTTTCCCTGTAGAAACACGTGGTTTATTAGTAGATAAATACGGCCCCATGCCGCTCTTACATCCTTTCTGCTCGTAACGCTCAACGGCGTTGTAACGTTTTCAAGTAGCCtagtgataaaaatatatattttttttctttgcatccacgtttttgttttaatatttattttaataacttgttaGTGTTGAGATATACATTCCAACTTAAAGCGTTTAAAGGACGTGGAtcaccttttttgtttgtttaccgcAGTTTTTTTTACTTGCCATCAAGCTTCCACATAATCTTCCCGCTTCGGTAAACGCATGTAGGCTCTAACTAAAGGGTGTTTTCAGTCATACCAGTGTGAAATGGACGCACCAGATATTTTTCGGAACCCACGTTTTGCAAATGGAGGTGAGCTGAAGTCACGTGTTTCCTCGTGCATTTGGACTGCTTGTTCGTGTTTCTGTTCGCCAGTAATGTGGTCAGGTTGTTTCTAAAAATTGAGCtatagttggttttatattagcacattCGTTTTTTTAACTGAcaacctgacttttttttttttttttttttttttcaagctactTTTAATAATTGGTCTTAAATCGCATGCAAATGATTAAGTCAACATTTGATTGACTGAAcgtgtactttgatagtcattgcctGCTAATGTTTTCCCCATCTAGAATTTGTAAATTTTTCTGAAAATATACTAAAAGTCTAAATGAACGTAAAACCagctttaatgtttttaaaaagcgttttAGCCTTCATAATTCTGCAGGAACATGTGTATTATGAGAGGTTTTGTATTGaatggatctttttttttttttttttacaaaaaaagtatttatttttttattaatcgtGTATTAGTTTGTGGTAAActttatttgttgaatttatttaatttttttaagtagtaAGTTTCTAATAATATTGGTTATTTGACTTGCCATATTCACATTTTACTACTGAATAACGAAGTTTTATTAAACTAACTTGAATCACAATTGTGTAGACTCGTccatttgttgcattttttttcttggtcTCTGCTTGGAAGACAAATGTAAGCTGATTGTCACAAATGATTTGAAACCGCTTCAATAAATGTACATTGATTCGATTCATTTCATGGtcttcatttttataaattgtggATTTTAATTTGCTTGCAAAAACGTTTATTTAGGATCAGTGTTGGTGGTAACATCACAAGTAACGAGAGTTGCGTAGAGTTACTTCTAATTAAAGTgatgcattttaaaaagtaattaagttGCTAACTAGTTactttaa

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0060429 epithelium development biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0061053 somite development biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0021511 spinal cord patterning biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0030684 preribosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0005634 nucleus cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033385 False 1571 lncRNA 0.34 2 37813663 37815304
TCONS_00033384 True 1389 lncRNA 0.32 2 37813663 37815373

Neighbor

gene id symbol gene type direction distance location
XLOC_016661 nfatc4 coding downstream 10049 37775655 ~ 37803614 (-)
XLOC_016660 myo9b coding downstream 68712 37684922 ~ 37744951 (-)
XLOC_016659 hiat1a coding downstream 129022 37656078 ~ 37684641 (-)
XLOC_016658 insra coding downstream 180767 37544951 ~ 37632896 (-)
XLOC_016657 arhgef18a coding downstream 275759 37504244 ~ 37537904 (-)
XLOC_016663 mettl17 coding upstream 12194 37827567 ~ 37837472 (-)
XLOC_016664 si:ch211-284o19.8 coding upstream 35751 37851124 ~ 37864665 (-)
XLOC_016665 zgc:66427 coding upstream 51507 37866880 ~ 37874647 (-)
XLOC_016666 hbl4 coding upstream 64439 37879812 ~ 37883256 (-)
XLOC_016667 mbl2 coding upstream 71904 37887277 ~ 37889152 (-)
XLOC_016652 NA non-coding downstream 397198 37413404 ~ 37416465 (-)
XLOC_016651 BX511231.1 non-coding downstream 404506 37405351 ~ 37409157 (-)
XLOC_016646 NA non-coding downstream 640838 37171808 ~ 37172825 (-)
XLOC_016645 NA non-coding downstream 656063 37157201 ~ 37157600 (-)
XLOC_016644 NA non-coding downstream 657872 37153759 ~ 37155791 (-)
XLOC_016680 NA non-coding upstream 328789 38144162 ~ 38145701 (-)
XLOC_016681 NA non-coding upstream 377586 38192959 ~ 38194479 (-)
XLOC_016694 BX248328.1 non-coding upstream 1555438 39370811 ~ 39370927 (-)
XLOC_016697 NA non-coding upstream 1794948 39610321 ~ 39612464 (-)
XLOC_016699 NA non-coding upstream 2011331 39826704 ~ 39827511 (-)

Expression


Co-expression Network