XLOC_016680


Basic Information

Item Value
gene id XLOC_016680
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38144162 ~ 38145701 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033891
tgtaaaaataattaacattttgagataaaaaatacttaacattttgagaaaatgtgaacacaaaatgtttttaaatgtatctttttaTTAACAATGGAAATATGATTGATTACTGTAGATAACTGCAGATACATTCATCAATGCATCAATATTGAAAGGTATAAGAGCAGAACTGCCTACTGTCtcgtacaatttaataaaaattgttCAGTACCACCCATAAATTTTACAGATGTGAAACTTTAATTGGAACTGTAAAGTTTTTTATTCGTAGAAACGAGTTTAATGCGGCCCGCAAGATGATTCGTACTAAATACTAAACTTAATTTCATCCCATCCAGAAGCCTAAATCAGCGTCAATTTGACAGCCATCTCAGAGAGAAAGACCTCATACCTTTTTTTTGTATCCGTCCAAGAAAACTAAACATTTGCAATCGATTAACCattggaaaatcttctctcgctcTGCACGTTTCTTACTGCTGGTTCTGTGTGTGCGCGATCTGTCACTCATACAGAAActctcacatgctctgcagacccatTGAGATGCGCCTTTTTTGCCAAAATGCATCCGACCGTAGTTtctgaatctcctaaaatgtccaatGCTTTGACACAGTAACACTGTACTTCAGTTGCCTCCATCTTGATAATTTTGTGTGATTATTTTACCTGTGTGATCCTGATTGTGTGGCGTGTTTGTTTTCGTGCAGTGGAAATGCAGCATACTTTCAGCCTGGCTGCTCAGGCTCTGGGACTATCCATTGAAATGTCTTCTGAATTGTCTTcagtttattttgaaaacatggACATAGCAGCCGAATTTTACTTTACTGTGAGGTGGAACCATAATAAAGCTTCCTCTCTCTAACTTGTCTTGATGTGAAATGTAAGATCCGCATCCACTGTCACTCTCCTCTATTTCTTCTTCAACGGGTGTCAGAAGCTCTTTGTTTTGTCTGGCCATCATCTCCACTTTCTCAAGCAGCTCTCTGACCTGTTTCTCATCATCTTGCATGCTGTTTAGTACATGATATCTGCTTCCACATTGACGAATGAGCCACTGCAGAGCCTCTCCTTCACTCTCAATGTGCTCATCAATAGTTGGCGTCCCCATCCAGTCGCCCCTGGTGAAAACCACTATACAGTGACTCCAGACAGTTTGACCCAGGAGCTCCATGTGTGCTTTGATAGTGTTTTCATATGCTTCACTGAAGAACAGCAGACTGAAGAACCAGCAAAACTGCATGAGGTCCAGTTCTGCTGACCTCTTCTCTAGTTTTCAGGATGGTGTTCATCACTGAGGTCTTCCCAGCCAACATGCGACCCATCAAAACAATCCTTTACTCTGGAAAAAATGTCTGCCGGTAAAAAATATTTAGGGTCATGAATAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033891 True 1397 lncRNA 0.40 2 38144162 38145701

Neighbor

gene id symbol gene type direction distance location
XLOC_016679 trim110 coding downstream 2165 38134924 ~ 38141997 (-)
XLOC_016678 trim110 coding downstream 12814 38127986 ~ 38131348 (-)
XLOC_016677 cbln12 coding downstream 18505 38121415 ~ 38125657 (-)
XLOC_016676 chd8 coding downstream 26624 38087413 ~ 38117538 (-)
XLOC_016675 tox4a coding downstream 64087 38068069 ~ 38080075 (-)
XLOC_016681 NA coding upstream 47258 38192959 ~ 38194479 (-)
XLOC_016682 acin1a coding upstream 52119 38197820 ~ 38225472 (-)
XLOC_016683 si:ch211-14a17.10 coding upstream 85994 38231695 ~ 38261272 (-)
XLOC_016684 rnf212b coding upstream 131574 38277275 ~ 38282079 (-)
XLOC_016685 zp3f.1 coding upstream 136946 38282647 ~ 38284749 (-)
XLOC_016662 NA non-coding downstream 328789 37813663 ~ 37815373 (-)
XLOC_016652 NA non-coding downstream 727697 37413404 ~ 37416465 (-)
XLOC_016651 BX511231.1 non-coding downstream 735005 37405351 ~ 37409157 (-)
XLOC_016646 NA non-coding downstream 971337 37171808 ~ 37172825 (-)
XLOC_016645 NA non-coding downstream 986562 37157201 ~ 37157600 (-)
XLOC_016694 BX248328.1 non-coding upstream 1225110 39370811 ~ 39370927 (-)
XLOC_016697 NA non-coding upstream 1464620 39610321 ~ 39612464 (-)
XLOC_016699 NA non-coding upstream 1681003 39826704 ~ 39827511 (-)
XLOC_016700 NA non-coding upstream 1684984 39830685 ~ 40033058 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_16008731_16013012 NA coding CI01000004 null 16008615 ~ 16013049 (+)
tiger barb (Puntius tetrazona) G13315 LOC107668965,LOC107591377,LOC107738243,LOC107579993 non-coding NC_056700.1 CM032069.1 17775470 ~ 17782418 (-)