XLOC_016681


Basic Information

Item Value
gene id XLOC_016681
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38192959 ~ 38194479 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033892
CAAAACCTTACATATGTTCTACATGTCTCAATAGGCTTGTTTCGTGTGCAGCTTGTGATTGGCGAGAGTAGGAAGGTCATTGTTACAGTTCCAGACTCATTATCTCTAAAGCCCACTGTTGGCAGCTTACGTACTGCAGACGAGCAGGCTTTTGACGTCCTTCCTGTCGAGCTCAGCGTAGGTCCTCTGTAATTAGTGTCCTGGTGGCTGACTGGAGCATTTTTCCGGCCTGATGCAACACACTTTGCATGAACCTGGTCGACCGTCCCGTGCCCACACACAGCCCAGCCCAGCACCACTTCTCTGACCCAAACTTCATTCTCGTAAGCTTGTACACTTAACGCTTTCAGATTAAGTAGTCCATTGCGgttatttttactaaatgaaATGTTACTTTTGGCTCAGAAAAAGTTTGGAAGTAGGATAAATCATTCAGTTTATTTTTGCAGGGAGTAAATTTCAAAGAAAACCTGTGCGTCAGGCAGATTGGAGACTCTGGGGACACTTGTTACGTCATTCTTCTTTAGAATCCGAGTCACTTTTGGCCAAAAATAGAAGTTGTGTGTGCTGTAATCCACAAACCACACAGCACCATATAGAGGGGTATGGAATTAGAAATATGGCCGATTCTGGATTATTCACAGTGGACTGAATCTTGTGGCATAACGTCTGTTATACGGTAATTAAAgtttatttagcttgtttcagACGTGAAGAAACCAAGCAGTAAAGTTATGTTTGCTTCAAAGGGATAACTCGCCCAAAAATGAAAGATCTCCCGTCATTTACTTCACATTAACATTACACAGCAGCTGAACAAGTGTGCCTAAAAAGTGGATGAGCTTCATTATAGAGAAAAGGAAGCTCTGCGACATGCTTTTCACATGTTAAAAACAAAGTTACCACAACAAGCAATTCAGTCATAACTATTCCCTTTCATtctgaaaaaagtgtttttatggTAGCCAGTTAtcagttatatataaaaagaggaATTAGCTTTTCCATAGTAATGAGAGATATTTTGATAGGCtaattcttcaaattatcttcttttgtgtttaacagaagaaacaaaattaaataggATTAAATTTCAATTTTTCATTTTGGTGGTCTGTGGAGCACAGGGATAAATGTCAAGATACTGGCATAGTTTCTTTTTTAAGCCACCTTATGTCAACTTGTTATAAATTCACTGTTGTGACAAAATCAATCAGTAACCATGTCTACGTAAGTGTTATTCAGTTCTTAAATTCCTGACGTGGTAGGTTCTAAAACTTTTACACATGGTTGCAAGGAGTCTGTAATTCATAATGGGATGTTAATACAGCTAAAACAGCGTTAAAATGAGGATTCACACTTTACAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033892 True 1371 lncRNA 0.39 2 38192959 38194479

Neighbor

gene id symbol gene type direction distance location
XLOC_016680 NA coding downstream 47258 38144162 ~ 38145701 (-)
XLOC_016679 trim110 coding downstream 50962 38134924 ~ 38141997 (-)
XLOC_016678 trim110 coding downstream 61611 38127986 ~ 38131348 (-)
XLOC_016677 cbln12 coding downstream 67302 38121415 ~ 38125657 (-)
XLOC_016676 chd8 coding downstream 75421 38087413 ~ 38117538 (-)
XLOC_016682 acin1a coding upstream 3341 38197820 ~ 38225472 (-)
XLOC_016683 si:ch211-14a17.10 coding upstream 37216 38231695 ~ 38261272 (-)
XLOC_016684 rnf212b coding upstream 82796 38277275 ~ 38282079 (-)
XLOC_016685 zp3f.1 coding upstream 88168 38282647 ~ 38284749 (-)
XLOC_016686 zp3f.2 coding upstream 90935 38285414 ~ 38312757 (-)
XLOC_016662 NA non-coding downstream 377586 37813663 ~ 37815373 (-)
XLOC_016652 NA non-coding downstream 776494 37413404 ~ 37416465 (-)
XLOC_016651 BX511231.1 non-coding downstream 783802 37405351 ~ 37409157 (-)
XLOC_016646 NA non-coding downstream 1020134 37171808 ~ 37172825 (-)
XLOC_016694 BX248328.1 non-coding upstream 1176332 39370811 ~ 39370927 (-)
XLOC_016697 NA non-coding upstream 1415842 39610321 ~ 39612464 (-)
XLOC_016699 NA non-coding upstream 1632225 39826704 ~ 39827511 (-)
XLOC_016700 NA non-coding upstream 1636206 39830685 ~ 40033058 (-)
XLOC_016703 NA non-coding upstream 1999588 40194067 ~ 40196570 (-)

Expression


Co-expression Network