XLOC_016687 (slc7a8b)


Basic Information

Item Value
gene id XLOC_016687
gene name slc7a8b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38318000 ~ 38337122 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032755
CACAGAGTCGCTGCTGTCTGTGAGAAAATGAGCAGCGGTGGCACCCGACTGCCGGACTCGGATCCCGACGGAGAACCAGCGGTTACCCTAAAGAAAGAGATCGGACTTCTCAGTGCATGTGGGATTGTCGTGGGTAACATCATTGGGTCTGGGATTTTTGTCAGTCCGAAGGGTGTTTTGGAAAACTCTGGTTCAGTGGGTCTGGCTCTCATAGTGTGGATCCTCACAGGCATCATCACTGCCATCGGTGCTCTGTGCTATGCTGAACTAGGAGTCACAATCCCAAAGTCAGGTGGAGATTATTCCTACGTTAATGACATCTTTGGAGGGCTTGCTGGGTTTCTGAGACTGTGGATTGCAGTGTTGGTCATCTATCCAACTAACCAGGCTGTGATTGCCCTCACATTTGCCAATTACGCATTGCAGCCCCTCTTCCCGTCCTGCTTTCCTCCGGAGAGAGCTCTGGGTTTACTGGCCGCTGTCTGTCTGTtgctgTTAACTTGGATTAACTGCTCCAGTGTCCGCTGGGCGACGCGTGTTCAGGATGTTTTCACCACAGGCAAGCTCCTCGCCCTCGGTCTCATCATCATTATGGGCATCGTGCAAATCTGCAAAGGTCATTTTTATTGGTTGGAACCGGAGCATGCATTTCACCCTCTCCAGCCATATGACATGGGCCGCATTGCACTCGCTGTTCTGCAGGGATCCTTTGCTTATGCAGGCTGGAACTTCCTTAATTATGTAACAGAGGAGCTGATCGACCCCTACAGGAACCTTCCTCGTGCGATCTTCATCTCAATCCCTCTGGTCACGTTCGTCTATGTATCAGCAAATATTGCATACGTTACAGCAATGAGCCCCCAGGAGTTACTGGCCTCCAATGCTGTAGCTGTGACATTTGGTGAAAAGCTGCTAGGCGTGATGTCATGGCTCATGCCCATCTCTGTTGCTCTGTCCACCTTCGGAGGGGTGAATGGATCCCTTTTCACATCATCTAGGTTATTCTTTGCAGGTGCGAGGGAGGGTCATCTTCCCCGTCTGCTGGCAATGATTCATGTGAACCGCTGTACACCCATCCCAGCTTTGCTCATCACCTGTATATCTACTCTGCTGATGCTGTGTGTCAGTGACATATACACCCTCATCAACTACGTTGGCTTCATCAACTACCTGTTTTATGGGGTCACTGTTGCCGGGCAGATTGTGCTTCGCATCAGAGAGCCAGACATATATCGGCCAATCAAAGTGAGCTTGGCATGGCCGGCAGTTTTCCTGATTTTCTGGGCTTTCCTGCTGATCTTCTCTCTGTACTCGGAGCCTGTGGTGTGCTGTATTGGTCTGGCCATCATGCTATCTGGGGTTCCTGTGTATCTGTTTGGCATCTATTGGGAAAATAAGCCCAAGAGCTTCAGTTCTTTTGTTGCCAGACTGACACACTTGGGGCAGAAGTTGTGCCTGGTGGTTTACCCTGGCGAGGACAGAGAAGATGGAAATGAAGACAGAGAGGAAGATGGATAG
>TCONS_00032754
CACAGAGTCGCTGCTGTCTGTGAGAAAATGAGCAGCGGTGGCACCCGACGCAGGACTGCATCAGTGCCGGACTCGGATCCCGACGGAGAACCAGCGGTTACCCTAAAGAAAGAGATCGGACTTCTCAGTGCATGTGGGATTGTCGTGGGTAACATCATTGGGTCTGGGATTTTTGTCAGTCCGAAGGGTGTTTTGGAAAACTCTGGTTCAGTGGGTCTGGCTCTCATAGTGTGGATCCTCACAGGCATCATCACTGCCATCGGTGCTCTGTGCTATGCTGAACTAGGAGTCACAATCCCAAAGTCAGGTGGAGATTATTCCTACGTTAATGACATCTTTGGAGGGCTTGCTGGGTTTCTGAGACTGTGGATTGCAGTGTTGGTCATCTATCCAACTAACCAGGCTGTGATTGCCCTCACATTTGCCAATTACGCATTGCAGCCCCTCTTCCCGTCCTGCTTTCCTCCGGAGAGAGCTCTGGGTTTACTGGCCGCTGTCTGTCTGTtgctgTTAACTTGGATTAACTGCTCCAGTGTCCGCTGGGCGACGCGTGTTCAGGATGTTTTCACCACAGGCAAGCTCCTCGCCCTCGGTCTCATCATCATTATGGGCATCGTGCAAATCTGCAAAGGTCATTTTTATTGGTTGGAACCGGAGCATGCATTTCACCCTCTCCAGCCATATGACATGGGCCGCATTGCACTCGCTGTTCTGCAGGGATCCTTTGCTTATGCAGGCTGGAACTTCCTTAATTATGTAACAGAGGAGCTGATCGACCCCTACAGGAACCTTCCTCGTGCGATCTTCATCTCAATCCCTCTGGTCACGTTCGTCTATGTATCAGCAAATATTGCATACGTTACAGCAATGAGCCCCCAGGAGTTACTGGCCTCCAATGCTGTAGCTGTGACATTTGGTGAAAAGCTGCTAGGCGTGATGTCATGGCTCATGCCCATCTCTGTTGCTCTGTCCACCTTCGGAGGGGTGAATGGATCCCTTTTCACATCATCTAGGTTATTCTTTGCAGGTGCGAGGGAGGGTCATCTTCCCCGTCTGCTGGCAATGATTCATGTGAACCGCTGTACACCCATCCCAGCTTTGCTCATCACCTGTATATCTACTCTGCTGATGCTGTGTGTCAGTGACATATACACCCTCATCAACTACGTTGGCTTCATCAACTACCTGTTTTATGGGGTCACTGTTGCCGGGCAGATTGTGCTTCGCATCAGAGAGCCAGACATATATCGGCCAATCAAAGTGAGCTTGGCATGGCCGGCAGTTTTCCTGATTTTCTGGGCTTTCCTGCTGATCTTCTCTCTGTACTCGGAGCCTGTGGTGTGCTGTATTGGTCTGGCCATCATGCTATCTGGGGTTCCTGTGTATCTGTTTGGCATCTATTGGGAAAATAAGCCCAAGAGCTTCAGTTCTTTTGTTGCCAGACTGACACACTTGGGGCAGAAGTTGTGCCTGGTGGTTTACCCTGGCGAGGACAGAGAAGATGGAAATGAAGACAGAGAGGAAGATGGATAG

Function

symbol description
slc7a8b Predicted to enable L-amino acid transmembrane transporter activity and neutral amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport and neutral amino acid transport. Predicted to act upstream of or within amino acid transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC7A8 (solute carrier family 7 member 8).

GO:

id name namespace
GO:0015804 neutral amino acid transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0006865 amino acid transport biological_process
GO:0003333 amino acid transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015175 neutral amino acid transmembrane transporter activity molecular_function
GO:0015179 L-amino acid transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-586 Predicted to enable L-amino acid transmembrane transporter activity and neutral amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport and neutral amino acid transport. Predicted to act upstream of or within amino acid transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC7A8 (solute carrier family 7 member 8).

Ensembl:

ensembl_id ENSDARG00000054343

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032755 False 1518 mRNA 0.51 12 38318000 38337122
TCONS_00032754 True 1533 mRNA 0.51 11 38318000 38337122

Neighbor

gene id symbol gene type direction distance location
XLOC_016686 zp3f.2 coding downstream 5243 38285414 ~ 38312757 (-)
XLOC_016685 zp3f.1 coding downstream 33251 38282647 ~ 38284749 (-)
XLOC_016684 rnf212b coding downstream 35921 38277275 ~ 38282079 (-)
XLOC_016683 si:ch211-14a17.10 coding downstream 56728 38231695 ~ 38261272 (-)
XLOC_016682 acin1a coding downstream 92528 38197820 ~ 38225472 (-)
XLOC_016688 prmt5 coding upstream 5176 38342298 ~ 38363017 (-)
XLOC_016689 si:ch211-119o8.6 coding upstream 648367 38985489 ~ 38992313 (-)
XLOC_016690 copb2 coding upstream 660235 38997357 ~ 39015130 (-)
XLOC_016691 rbp2b coding upstream 678944 39016066 ~ 39017838 (-)
XLOC_016692 rbp1.1 coding upstream 691215 39028337 ~ 39036604 (-)
XLOC_016681 NA non-coding downstream 123521 38192959 ~ 38194479 (-)
XLOC_016680 NA non-coding downstream 172299 38144162 ~ 38145701 (-)
XLOC_016662 NA non-coding downstream 502627 37813663 ~ 37815373 (-)
XLOC_016652 NA non-coding downstream 901535 37413404 ~ 37416465 (-)
XLOC_016651 BX511231.1 non-coding downstream 908843 37405351 ~ 37409157 (-)
XLOC_016694 BX248328.1 non-coding upstream 1033689 39370811 ~ 39370927 (-)
XLOC_016697 NA non-coding upstream 1273199 39610321 ~ 39612464 (-)
XLOC_016699 NA non-coding upstream 1489582 39826704 ~ 39827511 (-)
XLOC_016700 NA non-coding upstream 1493563 39830685 ~ 40033058 (-)
XLOC_016703 NA non-coding upstream 1856945 40194067 ~ 40196570 (-)

Expression


Co-expression Network