XLOC_016693 (nmnat3)


Basic Information

Item Value
gene id XLOC_016693
gene name nmnat3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 39062754 ~ 39090286 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032764
GTCCAAGCACCGGCCAAGCATTTTCCTGGTTCGGGAGTGGGTTCACAATGAGATCAGCGCCACGGAGATCCGTCGAGCTCTGAGGAGAGgaactttgatgtgtaggctgaagtatgaggagcgctatcctgctgaagaatttgccctctcctgtggtttgtcaTGTAATGtgctgcacaaatgtcttgatacctcagattGTTGTTGtggccatccactctgcagatctcgcGCATGTCCccattctgaatgtaaccccaaaccatgatttttccttcaccaaacttgactgatttctgtaaatcttgtgtccatgcgggttccaataggtcttctgcagtatttgtgatgattggggtgCAGTTCATTGGAAaagtctaccttctgccacttttcctaatgatcaactagaagtcaagttaatatttgttgctcttacaactgggattgatgacaagacttttgtcaggtagtgtatatttccttactaaaaatgattgaggtccAAGTGTTGTGTGATaagattattgtgacaggcctagacagtacataatattttactaaatatgtttagatactagtattcagcttccATCTGTATACTATGGAATATAAAACTGcctaagagggctaataataagaagagtattacaggaaatactgtgaaaaattccttgctctgttaaattttatttgggaaatat
>TCONS_00032765
GTGTAACATACGGCTAACTATATAAGTTAGCATTTAGCATTTTCCTAAAATTGGAGGAGATTTTTGATAAGATATGTTGTCTTTGTCATTCTCACAGGTCTGTACCGTGTGGTGGGTGGCATTATATCTCCTGTCGGTGATGGTTATGGTAAACAGGGTCTTGTTGCTTCAAAACACCGACTTGCTATGGCAAGACTGGCCTTGCAGAGCTCCGACTGGGTTTCTGTAGATGATTGGGAAAGCCAGCAGCCAGATTGGACTGAAACTGTGGTGACCATGAGGTACCACTACGGCCGTGTAGCTGCTCAACACTGCTGTAATAAGGGACCGCCCACAACCTCAGatgtTCCTCAGTTGAAGCTGTTGTGTGGAGCTGATTTCATGGACTCCTTTAAAGTGCCTGGTCTGTGGACGGATGAGCACATCGAGGAGGTTGTGGGCCGATTTGGACTGGTCTGCGTGAGCCGTGGCAGCCTTCAGCCTGATCGTGCTATACATGAGTCTGATTTGTTGTCCAAGCACCGGCCAAGCATTTTCCTGGTTCGGGAGTGGGTTCACAATGAGATCAGCGCCACGGAGATCCGTCGAGCTCTGAGGAGAGGTCACAGTGTTAAATATCTGTTGCCAGACTCGGTCATTGAGTACATAAGAGAGCACAAGCTTTATACCCAAGACAGCGAGATGAAAAACAAAGACGTTAAACTACGACCTCTCACTAAGCAAGTGATACTAGACTGATCTATTGGGAGGTCATAGACTTCAGTGGTGTTGATTGCAGgaactttgatgtgtaggctgaagtatgaggagcgctatcctgctg
>TCONS_00032766
ATGGCTGGCCGTATTCCTCTAGTTTTGCTGGCCTGTGGCTCCTTCAACCCCATTACCCATCAGCACATGCGGCTATTTGAGCTGGCCAGAGACCACATGCACCAGACGGGTCTGTACCGTGTGGTGGGTGGCATTATATCTCCTGTCGGTGATGGTTATGGTAAACAGGGTCTTGTTGCTTCAAAACACCGACTTGCTATGGCAAGACTGGCCTTGCAGAGCTCCGACTGGGTTTCTGTAGATGATTGGGAAAGCCAGCAGCCAGATTGGACTGAAACTGTGGTGACCATGAGGTACCACTACGGCCGTGTAGCTGCTCAACACTGCTGTAATAAGGGACCGCCCACAACCTCAGatgtTCCTCAGTTGAAGCTGTTGTGTGGAGCTGATTTCATGGACTCCTTTAAAGTGCCTGGTCTGTGGACGGATGAGCACATCGAGGAGGTTGTGGGCCGATTTGGACTGGTCTGCGTGAGCCGTGGCAGCCTTCAGCCTGATCGTGCTATACATGAGTCTGATTTGTTGTCCAAGCACCGGCCAAGCATTTTCCTGGTTCGGGAGTGGGTTCACAATGAGATCAGCGCCACGGAGATCCGTCGAGCTCTGAGGAGAGGTCACAGTGTTAAATATCTGTTGCCAGACTCGGTCATTGAGTACATAAGAGAGCACAAGCTTTATACCCAAGACAGCGAGATGAAAAACAAAGACGTTAAACTACGACCTCTCACTAAGCAAGTGATACTAGACTGA
>TCONS_00032767
TGTTATCCAGAGTACTATGGTGTGACACACTAAAATGGCTGGCCGTATTCCTCTAGTTTTGCTGGCCTGTGGCTCCTTCAACCCCATTACCCATCAGCACATGCGGCTATTTGAGCTGGCCAGAGACCACATGCACCAGACGGATATGTTGTCTTTGTCATTCTCACAGGTCTGTACCGTGTGGTGGGTGGCATTATATCTCCTGTCGGTGATGGTTATGGTAAACAGGGTCTTGTTGCTTCAAAACACCGACTTGCTATGGCAAGACTGGCCTTGCAGAGCTCCGACTGGGTTTCTGTAGATGATTGGGAAAGCCAGCAGCCAGATTGGACTGAAACTGTGGTGACCATGAGGTGAATATGAACAAAGAATGATTTTAGTTTTCTGCATTTACTTATTGatgtaaatcatttattcatttaaaaacaagaaaCCTTTGGGTGTTTTTACCACAACTGGGACTTTGACTGTGAAGGAAACATCAACTGGTTTTGACAGATTCAGTACTAAATGCACCTCTGCTATCCTAAAAACTGTTCAGAAGTTCAAAAATAGAGTGGTTTTGATGAGAAGTTGGCTTTTTTCTACTTCAAAagctctttttaaatgtaaaaagtacTGGCGGTATTAATATGAATGACAGTTTATGATATGCCTCACAGTTACTGTACGTCTGATGTTGGGCTTATCTTTTCTTTAATGAACTGATGGTGCTTATTAAAGCTTAAAAGTATTAGCAGCATAACCACTGACATTTTAATGTTCCCTACTGTTTCA
>TCONS_00032768
AGCATTTAGCATTTTCCTAAAATTGGAGGAGATTTTTGATAAGTGTTATCCAGAGTACTATGGTGTGACACACTAAAATGGCTGGCCGTATTCCTCTAGTTTTGCTGGCCTGTGGCTCCTTCAACCCCATTACCCATCAGCACATGCGGCTATTTGAGCTGGCCAGAGACCACATGCACCAGACGGATATGTTGT

Function

symbol description
nmnat3 Predicted to enable nicotinamide-nucleotide adenylyltransferase activity and nicotinate-nucleotide adenylyltransferase activity. Predicted to be involved in NAD biosynthetic process. Predicted to act upstream of or within pyridine nucleotide biosynthetic process. Predicted to be active in mitochondrion and nucleus. Orthologous to human NMNAT3 (nicotinamide nucleotide adenylyltransferase 3).

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0009435 NAD biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0000309 nicotinamide-nucleotide adenylyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0004515 nicotinate-nucleotide adenylyltransferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-331 Predicted to enable nicotinamide-nucleotide adenylyltransferase activity and nicotinate-nucleotide adenylyltransferase activity. Predicted to be involved in NAD biosynthetic process. Predicted to act upstream of or within pyridine nucleotide biosynthetic process. Predicted to be active in mitochondrion and nucleus. Orthologous to human NMNAT3 (nicotinamide nucleotide adenylyltransferase 3).

Ensembl:

ensembl_id ENSDARG00000077034

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032764 False 704 processed_transcript 0.40 2 39062754 39068546
TCONS_00032765 False 823 mRNA 0.48 5 39063324 39090286
TCONS_00032766 False 750 mRNA 0.51 4 39068321 39086540
TCONS_00032767 False 777 lncRNA 0.40 2 39082296 39086574
TCONS_00032768 True 195 mRNA 0.46 3 39082921 39090258

Neighbor

gene id symbol gene type direction distance location
XLOC_016692 rbp1.1 coding downstream 26150 39028337 ~ 39036604 (-)
XLOC_016691 rbp2b coding downstream 44916 39016066 ~ 39017838 (-)
XLOC_016690 copb2 coding downstream 47624 38997357 ~ 39015130 (-)
XLOC_016689 si:ch211-119o8.6 coding downstream 70441 38985489 ~ 38992313 (-)
XLOC_016688 prmt5 coding downstream 699737 38342298 ~ 38363017 (-)
XLOC_016694 BX248328.1 coding upstream 280525 39370811 ~ 39370927 (-)
XLOC_016695 cbln7 coding upstream 459090 39549376 ~ 39558643 (-)
XLOC_016696 spsb4a coding upstream 493780 39584066 ~ 39675829 (-)
XLOC_016697 NA coding upstream 520035 39610321 ~ 39612464 (-)
XLOC_016698 slc25a36a coding upstream 640998 39731284 ~ 39759059 (-)
XLOC_016681 NA non-coding downstream 868275 38192959 ~ 38194479 (-)
XLOC_016680 NA non-coding downstream 917053 38144162 ~ 38145701 (-)
XLOC_016662 NA non-coding downstream 1247381 37813663 ~ 37815373 (-)
XLOC_016652 NA non-coding downstream 1646289 37413404 ~ 37416465 (-)
XLOC_016651 BX511231.1 non-coding downstream 1653597 37405351 ~ 37409157 (-)
XLOC_016699 NA non-coding upstream 736418 39826704 ~ 39827511 (-)
XLOC_016700 NA non-coding upstream 740399 39830685 ~ 40033058 (-)
XLOC_016703 NA non-coding upstream 1103781 40194067 ~ 40196570 (-)

Expression


Co-expression Network