XLOC_016700


Basic Information

Item Value
gene id XLOC_016700
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 39830685 ~ 40033058 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033895
ACGAACGCAGGCCACGCGGCCCAGGCCATAGGCAATCTGTTTACATGAAAGCTGGGTGACTCTAGAGTCTAGACAATACTGCAGATCAGACTGCTATCAAGTTTATTCCTGACTGAGCTATTCGGACCACAGAGGACAGACATCCAACAAAGGCAAAAATCACAGAGGTCCTGGTCTTAATGATCATTGTCTTGGGGAACAGAATGACCGGCTTTGTGGAAATACACAGCTATAATTGAATGCAGCATGACCTCCGACCTCACCCCTAATGGTAGTGTAATGAGAGATGAGGGCTCATTGTTGCACCCATGTTGAAGATTTGGGATTCTACACTAACGACAGAGCAGACGGCCCATCTGTCAGGTGAATGGCTTTTTTGGCTGCGGGAACTGTGTGGATGACTATGCTGGACAATGAGATGGACAATCTGACTCTGGGCAGGAATGGACAAAGCGGACTAAAGGAAGGAAGCTGGAGTCTGAGTCCACAGAGATAACGGCTGAGAGGAGATTCACTCCAAACTACATGCTATTATGATGCGACTGCCTGACCTTTCCTGCACAGATCTGCTCCTCTATTCATCTGGAAAAAAGGGAGTGGATTTTTTCAAGATGTTCTCCAATGCCGGTAAAAGCAGACTGAGAGGTGACCAGAGAGTAAAGGACATCTGAAGGGCAGCCAGAATAACCAGGAATGACACAGAAATGCTCTTCCTCTACACAGGTCACGTGATAATAGAAATGGATGTTATGGGATGGCATTAATGGACAAATCAGTGAACTGAAGACACCAAccgaggctcattctgaaaagatatccctatatacatttctggagagcgccaaatacatcccaggag
>TCONS_00033896
CTAATTTGCATATTTCTGACGTCATTGATTGGACGAACGCAGGCCACGCGGCCCAGGCCATAGGCAATCTGTTTACATGAAAGCTGGGTGACTCTAGAGTCTAGACAATACTGCAGATCAGACTGCTATCAAGTTTATTCCTGACTGAGCTATTCGGACCACAGAGGACAGACATCCAACAAAGGCAAAAATCACAGAGGTCCTGGTCTTAATGATCATTGTCTTGGGGAACAGAATGACCGGCTTTGTGGAAATACACAGCTATAATTGAATGCAGCATGACCTCCGACCTCACCCCTAATGGTAGTGTAATGAGAGATGAGGGCTCATTGTTGCACCCATGTTGAAGATTTGGGATTCTACACTAACGACAGAGCAGACGGCCCATCTGTCAGGTGAATGGCTTTTTTGGCTGCGGGAACTGTGTGGATGACTATGCTGGACAATGAGATGGACAATCTGACTCTGGGCAGGAATGGACAAAGCGGACTAAAGGAAGGAAGCTGGAGTCTGAGTCCACAGAGATAACGGCTGAGAGGAGATTCACTCCAAACTACATGCTATTATGATGCGACTGCCTGACCTTTCCTGCACAGATCTGCTCCTCTATTCATCTGGAAAAAAGGGAGTGGATTTTTTCAAGATGTTCTCCAATGCCGGTAAAAGCAGGTCACGTGATAATAGAAATGGATGTTATGGGATGGCATTAATGGACAAATCAGTGAACTGAAGACACCAAccgaggctcattctgaaaagatatccctatatacatttctggagagcgccaaatacatcccaggag
>TCONS_00033897
ACGAACGCAGGCCACGCGGCCCAGGCCATAGGCAATCTGTTTACATGAAAGCTGGGTGACTCTAGAGTCTAGACAATACTGCAGATCAGACTGCTATCAAGTTTATTCCTGACTGAGCTATTCGGACCACAGAGGACAGACATCCAACAAAGGCAAAAATCACAGAGGTCCTGGTCTTAATGATCATTGTCTTGGGGAACAGAATGACCGGCTTTGTGGAAATACACAGCTATAATTGAATGCAGCATGACCTCCGACCTCACCCCTAATGGTAGTGTAATGAGAGATGAGGGCTCATTGTTGCACCCATGTTGAAGATTTGGGATTCTACACTAACGACAGAGCAGACGGCCCATCTGTCAGGTGAATGGCTTTTTTGGCTGCGGGAACTGTGTGGATGACTATGCTGGACAATGAGATGGACAATCTGACTCTGGGCAGGAATGGACAAAGCGGACTAAAGGAAGGAAGCTGGAGTCTGAGTCCACAGAGATAACGGCTGAGAGGAGATTCACTCCAAACTACATGCTATTATGATGCGACTGCCTGACCTTTCCTGCACAGATCTGCTCCTCTATTCATCTGGAAAAAAGGGAGTGGATTTTTTCAAGATGTTCTCCAATGCCGGTAAAAGCAGATTTCTCTTGTTGGAGGGAAGCGGCGTGTTGCGTTAGATTGCTGCTGATGTGTGTGGATCATGTTTACCCAGTTGACAGTGCCAGATCTGAGCTTTCTCTTTTTGGCTCTCCATGCACCAGTAACCCTGCAGACCATTTCGTCATCACACCGGCTCTGCTATCGCTGTGATCTTCTGACTCCGTGGGCACAGCGGCCGCTGACAGTGCGGTTTTTTGTCTATGACGTTCCTGTGTATTGAAATGAAGAGCACGTTCAAAGGCCTGTGATGATTTTCAAAGGCCTGATCCTGGAG
>TCONS_00032777
GACAGACATCCAACAAAGGCAAAAATCACAGAGGTCCTGGTCTTAATGATCATTGTCTTGGGGAACAGAATGACCGGCTTTGTGGAAATACACAGCTATAATTGAATGCAGCATGACCTCCGACCTCACCCCTAATGGTAGTGTAATGAGAGATGAGGGCTCATTGTTGCACCCATGTTGAAGATTTGGGATTCTACACTAACGACAGAGCAGACGGCCCATCTGTCAGGTGAATGGCTTTTTTGGCTGCGGGAACTGTGTGGATGACTATGCTGGACAATGAGATGGACAATCTGACTCTGGGCAGGAATGGACAAAGCGGACTAAAGGAAGGAAGCTGGAGTCTGAGTCCACAGAGATAACGGCTGAGAGGAGATTCACTCCAAACTACATGCTATTATGATGCGACTGCCTGACCTTTCCTGCACAGATCTGCTCCTCTATTCATCTGGAAAAAAGGGAGTGGATTTTTTCAAGATGTTCTCCAATGCCGGTAAAAGCAGaCCTTATCATCATCTACATTGTCTGGAAGTCCAGTACAGCGGCAGcacaaacaaaacagacaaaGCTCATGTTTAGATGATGCTATCGTCTCAGTTTCAAAGCTAAAGTGATTTATGTCAGCTTCCTAACATGTCTGTGCCTGCTTTGGCTCATTGAGGCATTGTAAAGTGCGTTCACTCCATTCAGATCAAAACAGGAAGTACAAACAACGCACAAACAACAGCCTAATCGCTTCCTGTCAGAGGTCTTTTGCGGAGCACGACCCATAAGAAAACAACAGCGCCGTTGGTCAGATGGGGAGATAAAGAAAGGCCATCTCTTTCATCATTTCCCATCTTCTCAAGCACAATGTTTTG
>TCONS_00033898
CTAATTTGCATATTTCTGACGTCATTGATTGGACGAACGCAGGCCACGCGGCCCAGGCCATAGGCAATCTGTTTACATGAAAGCTGGGTGACTCTAGAGTCTAGACAATACTGCAGATCAGACTGCTATCAAGTTTATTCCTGACTGAGCTATTCGGACCACAGAGGACAGACATCCAACAAAGGCAAAAATCACAGAGGTCCTGGTCTTAATGATCATTGTCTTGGGGAACAGAATGACCGGCTTTGTGGAAATACACAGCTATAATTGAATGCAGCATGACCTCCGACCTCACCCCTAATGGTAGTGTAATGAGAGATGAGGGCTCATTGTTGCACCCATGTTGAAGATTTGGGATTCTACACTAACGACAGAGCAGACGGCCCATCTGTCAGGTGAATGGCTTTTTTGGCTGCGGGAACTGTGTGGATGACTATGCTGGACAATGAGATGGACAATCTGACTCTGGGCAGGAATGGACAAAGCGGACTAAAGGAAGGAAGCTGGAGTCTGAGTCCACAGAGATAACGGCTGAGAGGAGATTCACTCCAAACTACATGCTATTATGATGCGACTGCCTGACCTTTCCTGCACAGATCTGCTCCTCTATTCATCTGGAAAAAAGGGAGTGGATTTTTTCAAGATGTTCTCCAATGCCGGTAAAAGCAGAGTCATGGAGTCATTTCAGCATGATGTGAAGGCCGGGTGGTGATCTTCATAGACATGCACGTACAGACACACAAACTTAAGTCTGACTTCAGCTGATATCATCAACACAATCCTATTGAAATTTGTTGGTGTGGaactacaaaaaatacacattatgtgttttgttttttctaaattcAAAGCCTGTagacgtacacacacacacacagacaaccaGCCTTGCCATCTATCAGGGCCAGTGGCTGTGACTAAGCCTGCATGGAATCTGGAATCCACAGAACATTTTGCAGACCTCCACGAATTCAGCACACAAGTCATTCAGCAGGAGAAGACAGAtgtgttgtgtttatttatattttgactaATTTTAAAACCATTCAGCAATTAGGGCTTGTTCAGTCAGGCTGCAAAAATGGAATTGTTTTTTGGATCAATCCTCAACTCATAACCCATTTCGTTTTTTAGAGGTCTGAGTAAGAACCCCCACAAGCCTGATTATTCATGCATCTTTGTTCAATATTTCACATTTGctgttggtgttgttgtttttattgagaAATGTTGGACATTCCCTCAGCATTTAATTTGGTATACATTTTTCATTCTACAGTGACTTAAATGTTGTATATGACTTTGTTGTTATTCGTGTATTTGGTGGATTGAACTGTTTTTGCACAGTTTAAGGTTCACCCTATTTTACCCATACTGTACAGTATTGGTGCTCGTCTCTATCCCATTTTTCTGAAACAAGACAATTTTTCCAAGCTGAGTATCATGAAAAGCACAatgtgctctgattggccagctatCCAGTGCATAAATCCTTTTCACAAGCCTCTTATGGcgcgtttaatggtcatcagcatcttaaatcctttaaagtttttaatacttttattttctttaaaaagtatgaaaattgatatgtatttatctatgtattatatcatctttgcttcaaattaaaaaaaaaaaaaaaaaaaaactaattactgcTTGTGCGAGgggtttctaatgcagtgtccaTTGGATAGG
>TCONS_00033899
GCCATAGGCAATCTGTTTACATGAAAGCTGGGTGACTCTAGAGTCTAGACAATACTGCAGATCAGACTGCTATCAAGTTTATTCCTGACTGAGCTATTCGGACCACAGAGGACAGACATCCAACAAAGGCAAAAATCACAGAGGTCCTGGTCTTAATGATCATTGTCTTGGGGAACAGAATGACCGGCTTTGTGGAAATACACAGCTATAATTGAATGCAGCATGACCTCCGACCTCACCCCTAATGGTAGTGTAATGAGAGATGAGGGCTCATTGTTGCACCCATGTTGAAGATTTGGGATTCTACACTAACGACAGAGCAGACGGCCCATCTGTCAGagtAGCAGTTGAGCAAGTACTTCTGGAAAGACAAAGTGACTGGTGTTCCACTAAAAGAATTGCCTCTTTTAATTAAAAAGCATGAAGTATTTC
>TCONS_00033900
GACGAACGCAGGCCACGCGGCCCAGGCCATAGGCAATCTGTTTACATGAAAGCTGGGTGACTCTAGAGTCTAGACAATACTGCAGATCAGACTGCTATCAAGTTTATTCCTGACTGAGCTATTCGGACCACAGAGGACAGACATCCAACAAAGGCAAAAATCACAGAGGTCCTGGTCTTAATGATCATTGTCTTGGGGAACAGAATGACCGGCTTTGTGGAAATACACAGCTATAATTGAATGCAGCATGACCTCCGACCTCACCCCTAATGGTAGTGTAATGAGAGATGAGGGCTCATTGTTGCACCCATGTTGAAGATTTGGGATTCTACACTAACGACAGAGCAGACGGCCCATCTGTCAGCTGTGACTTAAATGGGTCTGGAATATTCCCCTCTGTGGATTTCACCTTGATTGGATGTAATGACAGCATCTGTAGCCGCAAGTGCCCTTGGCGAGCTCCTTCAGGAGCCGAGGTTGTCCACATGTGCATACACCCCCAtacatcttcaaaaaaaaaaaaaatggtttgactTACCTTTGACTATTGGGGAAAAACTTAAATTACTTGTTGAGGTCAGGGTGACAGGACGATGGCTGACACCGCAAGCTTGTCTCCAGGAAATCCCAGTCAAGGTCAGAGAATCAGATATACAGGTGATTATCAGCTGTGTCTGGGATGCTGTGCTGCTGTCACAGCTCTTGTAATCGAAGATACACTGTTGCTTTTCATCTTCCTACAGaacttcttttttattgtttacaacagtttatttatttatttttttagacactGATACTTGCGACAACTGAATAAGTTGTAAACATACATAGAAACACATAGTGGTGTTTTCCATTTCAttgttgaatgaatcatttgagtaaaTGATTGCTCTtcatctatattttaaatttgaatgaagcgattcttttaaaatgattcaaTGGCTTACTCAAAAAACCATCACTTTTATTCTAAAGTTGAGATAATCTGCATTTTGACCAAATAATTTTGTATAGCAGGACAGCAATTCTGTGTCGGTGTATGTGACAATTTAGTGTATGTGACAAATGAAGTATACCCAA
>TCONS_00032778
GACAGACATCCAACAAAGGCAAAAATCACAGAGGTCCTGGTCTTAATGATCATTGTCTTGGGGAACAGAATGACCGGCTTTGTGGAAATACACAGCTATAATTGAATGCAGCATGACCTCCGACCTCACCCCTAATGGTAGTGTAATGAGAGATGAGGGCTCATTGTTGCACCCATGTTGAAGATTTGGGATTCTACACTAACGACAGAGCAGACGGCCCATCTGTCAGCTGTGACTTAAATGGGTCTGGAATATTCCCCTCTGTGGATTTCACCTTGATTGGATGTAATGACAGCATCT

Function

GO:

id name namespace
GO:0000003 reproduction biological_process
GO:0022414 reproductive process biological_process
GO:0000075 cell cycle checkpoint biological_process
GO:0000077 DNA damage checkpoint biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0031570 DNA integrity checkpoint biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:1990511 piRNA biosynthetic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0033554 cellular response to stress biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko00904 Diterpenoid biosynthesis
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000094509

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033895 False 859 lncRNA 0.47 6 39830685 40033026
TCONS_00033896 False 805 lncRNA 0.46 5 39830685 40033058
TCONS_00033897 False 931 lncRNA 0.48 5 39846697 40033026
TCONS_00032777 False 860 processed_transcript 0.45 4 39926961 40026622
TCONS_00033898 False 1704 lncRNA 0.40 5 39936564 40033058
TCONS_00033899 False 432 lncRNA 0.44 3 40006091 40033002
TCONS_00033900 False 1086 lncRNA 0.41 3 40008087 40033027
TCONS_00032778 True 300 processed_transcript 0.45 2 40008738 40026622

Neighbor

gene id symbol gene type direction distance location
XLOC_016699 NA coding downstream 3174 39826704 ~ 39827511 (-)
XLOC_016698 slc25a36a coding downstream 71626 39731284 ~ 39759059 (-)
XLOC_016696 spsb4a coding downstream 154856 39584066 ~ 39675829 (-)
XLOC_016697 NA coding downstream 218221 39610321 ~ 39612464 (-)
XLOC_016695 cbln7 coding downstream 272042 39549376 ~ 39558643 (-)
XLOC_016701 epha4a coding upstream 34750 40067808 ~ 40136024 (-)
XLOC_016702 si:ch211-122l24.6 coding upstream 148575 40181633 ~ 40191603 (-)
XLOC_016703 NA coding upstream 161009 40194067 ~ 40196570 (-)
XLOC_016704 NA coding upstream 165759 40198817 ~ 40199780 (-)
XLOC_016705 NA coding upstream 172850 40205908 ~ 40211792 (-)
XLOC_016694 BX248328.1 non-coding downstream 459758 39370811 ~ 39370927 (-)
XLOC_016681 NA non-coding downstream 1636206 38192959 ~ 38194479 (-)
XLOC_016680 NA non-coding downstream 1684984 38144162 ~ 38145701 (-)
XLOC_016706 NA non-coding upstream 500905 40533963 ~ 40534863 (-)
XLOC_016707 CR931819.2 non-coding upstream 511888 40544946 ~ 40545061 (-)

Expression


Co-expression Network