XLOC_016704


Basic Information

Item Value
gene id XLOC_016704
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 40198817 ~ 40199780 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033387
CAGTTTCTTCACAAAAGAGGGTGAACAATGCATTCACTGGAACCAGAGCTGGGTTCGGGAGAAGATCCAGGAGCTCATAATCTCAATGGAGAAAATGAACAGCACTGTTTCTACACCGCTGAAGATGAACAGCACTCTGTCTACACTTCTGAGGATCAACAGCACTATTTCCACAGCTCTGCAGATGAACAGCACTCTCTCTACTCCTCTCTCCACCTCCtcttcttaataataaaaacactaaagATATTTAAACTGATCAAAATGGGTTCTGCTGAAATAAGTCAGCTTGTTTTAAAAATGCGGTGAATGCTTCATGCTATTTATTGTAACTTATTGTAttgaaaattgtatttatttggtaTTCTAACAATTTGACTAAAAGCTAtgttgtactgtactgtatgtacttgAACTGTATGCTTGTCATCCATAAGTTATGTTAAAATGATGAACCTGTACAAAGACGAATCGTGTTTAAATAAAGTAGTCAGTAAATCTTAAA
>TCONS_00032786
AGAACATCCACGGAAACGCAACATGCAGCTCAACCAGAAGATGATGATGAGACTTGCTGCCATTGCTGTCATTATGTCAGTGATGATCATGAAGACGAATGGACAAAACCGGTTTGTTCAATGCTGCACAAGCGTCTCCACTAAGGAAATCACGTTGCCTATAACCGGATTCAAATATCAGAAGAGAAATCCTCCATGCGTCAAAGCAGTCATTTTCTTCACAAAAGAGGGTGAACAATGCATTCACTGGAACCAGAGCTGGGTTCGGGAGAAGATCCAGGAGCTCATAATCTCAATGGAGAAAATGAACAGCACTGTTTCTACACCGCTGAAGATGAACAGCACTCTGTCTACACTTCTGAGGATCAACAGCACTATTTCCACAGCTCTGCAGATGAACAGCACTCTCTCTACTCCTCTCTCCACCTCCtcttcttaataataaaaacactaaagATATTTAAACTGATCAAAATGGGTTCTGCTGAAATAAGTCAGCTTGTTTTAAAAATGCGGTGAATGCTTCATGCTATTTATTGTAACTTATTGTAttgaaaattgtatttatttggtaTTCTAACAATTTGACTAAAAGCTAtgttgtactgtactgtatgtacttgAACTGTATGCTTGTCATCCATAAGTTATGTTAAAATGATGAACCTGTACAAAGACGAATCGTGTTTAAATAAAGTAGTCAGTAAATCTTAAA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0016203 muscle attachment biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0050746 regulation of lipoprotein metabolic process biological_process
GO:0050748 negative regulation of lipoprotein metabolic process biological_process
GO:0006500 N-terminal protein palmitoylation biological_process
GO:0060254 regulation of N-terminal protein palmitoylation biological_process
GO:0060262 negative regulation of N-terminal protein palmitoylation biological_process
GO:0003008 system process biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0003015 heart process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:1903059 regulation of protein lipidation biological_process
GO:1903060 negative regulation of protein lipidation biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0060047 heart contraction biological_process
GO:0042383 sarcolemma cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005901 caveola cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031672 A band cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0031430 M band cellular_component
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033387 False 505 lncRNA 0.36 2 40198817 40199412
TCONS_00032786 True 715 lncRNA 0.38 4 40198817 40199780

Neighbor

gene id symbol gene type direction distance location
XLOC_016703 NA coding downstream 2247 40194067 ~ 40196570 (-)
XLOC_016702 si:ch211-122l24.6 coding downstream 7214 40181633 ~ 40191603 (-)
XLOC_016701 epha4a coding downstream 62793 40067808 ~ 40136024 (-)
XLOC_016700 NA coding downstream 165759 39830685 ~ 40033058 (-)
XLOC_016699 NA coding downstream 371306 39826704 ~ 39827511 (-)
XLOC_016705 NA coding upstream 6128 40205908 ~ 40211792 (-)
XLOC_016706 NA coding upstream 334183 40533963 ~ 40534863 (-)
XLOC_016707 CR931819.2 coding upstream 345166 40544946 ~ 40545061 (-)
XLOC_016708 CR931819.1 coding upstream 395595 40595375 ~ 40595494 (-)
XLOC_016709 NA coding upstream 423174 40622954 ~ 40712263 (-)
XLOC_016697 NA non-coding downstream 586353 39610321 ~ 39612464 (-)
XLOC_016694 BX248328.1 non-coding downstream 827890 39370811 ~ 39370927 (-)

Expression


Co-expression Network