XLOC_016714


Basic Information

Item Value
gene id XLOC_016714
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 41162103 ~ 41447891 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033390
ACATGGCATTTATGACTCAGGTGATTGGTTGAATAAGTGTGCACTTATGAGCAAAGCTGGCACATTTCAAATCACCAAGGCCTTGTGCCAGCTAAGTAACAACTTCCTTTAGATATTTTAGGCTTCTATGAATACCACAAAATGACATCTGTGAAATAAACAAAAGTTAACATCACAAACAACAGTGCAACAGCACCAAAACAAAGATCCTGCATGTCAGATTGCTCTCGATCTGGGAAAATCAAAACAGAACCTTTCCGTGCAGCTCGCAGGTCCATCTTTCATCTTCAGGAGAGGGAAGTGTGCCAGACCTGTTTGCTGAGGCTCTGCTGGATCTGTACTTCTTGTACAGGTTGCTTCCTGGATGATACAGGCTTGGGCCGTGTGCCATTGCCAGGGCCGTGTCGTTTTGATGATCGCATTACGATGCCGCAGAGCTCGCTGTGTTTAACATGTAATCTGTGTTGCCACGTTGGGCAAATCTCCCTGAACTTTCTTACTTACTGGAGGATAAAAAAGCATCAGCGTTGCATCGGTAAATGTGTGATTTATGTGGTAACAGAGAGGCAATCAGAAGAGTCCGGAGTCATCAATCACAACTATGTTTTTCTCTGCTCAGCCCGTGTATGGAGATAGTGCCGCCTCCGCAGTGCATTGACATGCAAACCAGATCCCACTAGAGACATGGAGAGAAGTATCAAACCGAGGACTGACTGATGAATGACTAAGGTTTGCTTAAAGGTTACCGTctcctcttttctttctttctatcgctctttctctctcctgTC
>TCONS_00032798
ACATGGCATTTATGACTCAGGTGATTGGTTGAATAAGTGTGCACTTATGAGCAAAGCTGGCACATTTCAAATCACCAAGGCCTTGTGCCAGCTAAGTAACAACTTCCTTTAGATATTTTAGGCTTCTATGAATACCACAAAATGACATCTGTGAAATAAACAAAAGTTAACATCACAAACAACAGTGCAACAGCACCAAAACAAAGATCCTGCATGTCAGATTGCTCTCGATCTGGGAAAATCAAAACAGAACCTTTCCGTGCAGCTCGCAGGTCCATCTTTCATCTTCAGGAGAGGGAAGTGTGCCAGACCTGTTTGCTGAGGCTCTGCTGGATCTGTACTTCTTGTACAGGTTGCTTCCTGGATGATACAGGCTTGGGCCGTGTGCCATTGCCAGCCCGTGTATGGAGATAGTGCCGCCTCCGCAGTGCATTGACATGCAAACCAGATCCCACTAGAGACATGGAGAGAAGTATCAAACCGAGGACTGACTGATGAATGACTAAGGTTTGCTTAAAGGTTACCGTctcctcttttctttctttctatcgctctttctctctcctgTC
>TCONS_00033391
ACATGGCATTTATGACTCAGGTGATTGGTTGAATAAGTGTGCACTTATGAGCAAAGCTGGCACATTTCAAATCACCAAGGCCTTGTGCCAGCTAAGTAACAACTTCCTTTAGATATTTTAGGCTTCTATGAATACCACAAAATGACATCTGTGAAATAAACAAAAGTTAACATCACAAACAACAGTGCAACAGCACCAAAACAAAGATCCTGCATGTCAGATTGCTCTCGATCTGGGAAAATCAAAACAGGTGCAGGCATGTGTACAGTACATCAAACGGAAATCCCCTCTTTACTTCAAATGCATACAAACCTTTCCGTGCAGCTCGCAGGTCCATCTTTCATCTTCAGGAGAGGGAAGTGTGCCAGACCTGTTTGCTGAGGCTCTGCTGGATCTGTACTTCTTGTACAGGTTGCTTCCTGGATGATACAGGCTTGGGCCGTGTGCCATTGCCAGGGCCGTGTCGTTTTGATGATCGCATTACGATGCCGCAGAGCTCGCTGTGTTTAACATGTAATCTGTGTTGCCACGTTGGGCAAATCTCCCTGAACTTTCTTACTTACTGGAGGATAAAAAAGCATCAGCGTTGCATCGCCCGTGTATGGAGATAG
>TCONS_00033910
CAGAACCTTTCCGTGCAGCTCGCAGGTCCATCTTTCATCTTCAGGAGAGGGAAGTGTGCCAGACCTGTTTGCTGAGGCTCTGCTGGATCTGTACTTCTTGTACAGGTTGCTTCCTGGATGATACAGGCTTGGGCCGTGTGCCATTGCCAGGGCCGTGTCGTTTTGATGATCGCATTACGATGCCGCAGAGCTCGCTGTGTTTAACATGTAATCTGTGTTGCCACGTTGGGCAAATCTCCCTGAACTTTCTTACTTACTGGAG
>TCONS_00033392
ACATGGCATTTATGACTCAGGTGATTGGTTGAATAAGTGTGCACTTATGAGCAAAGCTGGCACATTTCAAATCACCAAGGCCTTGTGCCAGCTAAGTAACAACTTCCTTTAGATATTTTAGGCTTCTATGAATACCACAAAATGACATCTGTGAAATAAACAAAAGTTAACATCACAAACAACAGTGCAACAGCACCAAAACAAAGATCCTGCATGTCAGATTGCTCTCGATCTGGGAAAATCAAAACAGAACCTTTCCGTGCAGCTCGCAGGTCCATCTTTCATCTTCAGGAGAGGGAAGTGTGCCAGACCTGTTTGCTGAGGCTCTGCTGGATCTGTACTTCTTGTACAGGTTGCTTCCTGGATGATACAGGCTTGGGCCGTGTGCCATTGCCAGTAGCGGGCTTTTGAAGACGAGGCTACTATATGGAAATGAGGAGGGTCGGCGACAGCCTGGTAACCGGACCCCGCTGTAATAAGGATGAAGAATGACAATTTAAATTTGGAGATTAATGGATTATCTGGAAAGGGCTTGTCACGGTGCCACAGCCAATGACCTTTTCAGATTGACGGATGACTCCATTTTACCTGAACGAATATTCTGATCCAAGGGGCAGCATGGACACTCTCTCTTCCCTTTTTGATCCGGGTTTGAGGAAAGCTTATTTGTGTC
>TCONS_00033912
CTTTGACTCCACAGCCTAAAAAAGTCTGTCAAATTGTCACACGGCTCCAGAGTCACATGGCATTTATGACTCAGGTGATTGGTTGAATAAGTGTGCACTTATGAGCAAAGCTGGCACATTTCAAATCACCAAGGCCTTGTGCCAGCTAAGTAACAACTTCCTTTAGATATTTTAGGCTTCTATGAATACCACAAAATGACATCTGTGAAATAAACAAAAGTTAACATCACAAACAACAGTGCAACAGCACCAAAACAAAGATCCTGCATGTCAGATTGCTCTCGATCTGGGAAAATCAAAACAGGTGCAGGCATGTGTACAGTACATCAAACGGAAATCCCCTCTTTACTTCAAATGCATACATAGACTGTGACTGATGACTGTTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117570

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033390 False 791 lncRNA 0.45 3 41162103 41447837
TCONS_00032798 False 569 lncRNA 0.45 3 41162103 41447837
TCONS_00033391 False 611 lncRNA 0.45 5 41162258 41447837
TCONS_00033910 False 262 lncRNA 0.52 2 41162385 41272468
TCONS_00033392 False 673 lncRNA 0.45 3 41266836 41447837
TCONS_00033912 True 387 lncRNA 0.40 3 41441577 41447891

Neighbor

gene id symbol gene type direction distance location
XLOC_016713 hs6st1a coding downstream 38090 40901997 ~ 41124013 (-)
XLOC_016712 uggt1 coding downstream 271839 40830768 ~ 40890264 (-)
XLOC_016711 BX005042.1 coding downstream 357135 40786665 ~ 40804968 (-)
XLOC_016710 NA coding downstream 392299 40766601 ~ 40769804 (-)
XLOC_016709 NA coding downstream 449840 40622954 ~ 40712263 (-)
XLOC_016718 NA coding upstream 56586 41504477 ~ 41518340 (-)
XLOC_016719 d2hgdh coding upstream 98380 41546271 ~ 41562868 (-)
XLOC_016720 znf622 coding upstream 115182 41563073 ~ 41571454 (-)
XLOC_016721 zgc:110158 coding upstream 129616 41577507 ~ 41723487 (-)
XLOC_016722 NA coding upstream 303949 41751840 ~ 41772041 (-)
XLOC_016708 CR931819.1 non-coding downstream 566609 40595375 ~ 40595494 (-)
XLOC_016707 CR931819.2 non-coding downstream 617042 40544946 ~ 40545061 (-)
XLOC_016725 BX663525.1 non-coding upstream 498084 41945975 ~ 41946896 (-)
XLOC_016727 BX663525.2 non-coding upstream 524646 41972537 ~ 41983756 (-)
XLOC_016743 NA non-coding upstream 1148033 42595924 ~ 42597593 (-)

Expression


Co-expression Network