XLOC_016730 (cspp1b)


Basic Information

Item Value
gene id XLOC_016730
gene name cspp1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42068158 ~ 42071558 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032819
ACAGGAAAATAGCAAGCGAGGAATAACGGCGCTGCTTATGTTTTTCCAGAGTGACACCGAACCATGGATCAGTTAAATCAGATCATGAGGCGATTAGCACTTATTATAAATACACAGTTTATTTAAGAAAAACCCGATTAACGTTACTTCAATCGCATGAACAAATCCAAACATCAGATGACACGTTCATTCATTTTATCTAATGAAATCAGGACAGCAGATTTTCTGCTGGCATTATTAGTTTTCATCAGGTAACACCTATGTTTTAGtgaataaacgcaatatcacatttCACTAACTTTATTATGGTGTCTGATGTCGGCGTGATCTGATCAAATGGCTGTTTTGTGGAGTGGAGGAACAGATGCATTCAGAGTCCTGTAAACAGAGGATTGAACTGAGTTTCAGCTCTTGGCGGAAATCAAAGAGATGGATGAAGTGCTGGAGAAGTTTCTGGAAGAGCAGAAGACAAAGATAGCAGAAGAAAAGGCCTGTCTGGAGCAGGAACCTCCTTACATGGAGATGAGGAGGCGGACAGGCCATGTTCTGCAGAAAGAGAACATCCCTCCACGTACAAGTCAGCAAGAAGGACTAAGTCTGCCATTAGGAGAGGAATATGAGAGAAAGAAACACAAACTCCAAGAAGAGCTCAGGAATGATTACAGGAAATACATGACAGAG

Function

symbol description
cspp1b Predicted to be involved in positive regulation of cytokinesis. Predicted to be located in microtubule. Predicted to be active in centrosome and spindle pole. Human ortholog(s) of this gene implicated in Joubert syndrome 21. Orthologous to human CSPP1 (centrosome and spindle pole associated protein 1).

GO:

id name namespace
GO:0032467 positive regulation of cytokinesis biological_process
GO:0005813 centrosome cellular_component
GO:0000922 spindle pole cellular_component
GO:0005874 microtubule cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-619 Predicted to be involved in positive regulation of cytokinesis. Predicted to be located in microtubule. Predicted to be active in centrosome and spindle pole. Human ortholog(s) of this gene implicated in Joubert syndrome 21. Orthologous to human CSPP1 (centrosome and spindle pole associated protein 1).

Ensembl:

ensembl_id ENSDARG00000091628

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032819 True 681 mRNA 0.41 4 42068158 42071558

Neighbor

gene id symbol gene type direction distance location
XLOC_016729 cspp1b coding downstream 3089 42039036 ~ 42065069 (-)
XLOC_016728 gbp1 coding downstream 32851 42020915 ~ 42035307 (-)
XLOC_016727 BX663525.2 coding downstream 84402 41972537 ~ 41983756 (-)
XLOC_016726 si:dkey-97a13.6 coding downstream 103756 41949186 ~ 41964402 (-)
XLOC_016725 BX663525.1 coding downstream 121262 41945975 ~ 41946896 (-)
XLOC_016731 si:dkey-97a13.12 coding upstream 16898 42088456 ~ 42091926 (-)
XLOC_016732 adhfe1 coding upstream 23929 42095487 ~ 42109575 (-)
XLOC_016733 trim55a coding upstream 42752 42114310 ~ 42128714 (-)
XLOC_016734 slc39a6 coding upstream 84728 42156286 ~ 42173984 (-)
XLOC_016735 apom coding upstream 157183 42228741 ~ 42234561 (-)
XLOC_016722 NA non-coding downstream 296117 41751840 ~ 41772041 (-)
XLOC_016718 NA non-coding downstream 549818 41504477 ~ 41518340 (-)
XLOC_016717 BX890557.1 non-coding downstream 646436 41421606 ~ 41421722 (-)
XLOC_016743 NA non-coding upstream 524366 42595924 ~ 42597593 (-)
XLOC_016745 NA non-coding upstream 594344 42665902 ~ 42748662 (-)
XLOC_016746 NA non-coding upstream 606465 42678023 ~ 42678382 (-)
XLOC_016747 NA non-coding upstream 637111 42708669 ~ 42710429 (-)
XLOC_016748 NA non-coding upstream 642241 42713799 ~ 42717726 (-)

Expression


Co-expression Network