XLOC_016734 (slc39a6)


Basic Information

Item Value
gene id XLOC_016734
gene name slc39a6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42156286 ~ 42173984 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032823
ATGATGACGTTTCTTTGCACACGGTCTGGTCGCCGTGCTAGTGGTGTGGAGTGCAGAATCGCCGCTGAACGCGCTTACTTTCGAGCGCGTGGACTCCCGGTTGCCAATATGATTGGCTGGTGGCCACGCCTCTGCCCAGTGATGTCACTGGCACTGCTGTGGGCGTGTTCAGTGGGGGCGGGTTCAGACTGCAAATCTGTGGCCATTGAGACTGACAGCCGCATAGCAGAACAAACACAGCAGCGTCACCTACAGGCTCTGTTCGACAAGTATGGCCAGAACGGCAGCATCTCCCTAGAAGGCCTCTTCAACCTACTTAAAGGGGTCGGGCTTGACCGCATCCGGAAAGTGATGGTGCATCATCCTGGAAATGcccataatcacacacacacgcatgatcacacacacactcatgtggaCAAACTCACGGCGCACACACATCCGGTCACCACCAAGAAGGGAGACATGGATCACAGCGTGGAGAAGAGTGACCCTGTCCCAAAAGCACAGCCAGATCCTGCCTCTGGGAAGAAAAGCCAGTCAGATGCGCATCACAACCTGTACATGAAGATGAACCAGGAATCCACCACAGCTTTGACTACGCCGTCATATGTTACCAGATCACGGCGGACCAATCGCAGCGCCGATTATGATTTTACACAGGACCACGCCTCCTTTAGCCCCAGTCAGCCCAATGTGACACACTCAAACCACACCCATCATGATGAGGACACGCCCACACACCAGCATGATGACCATGATGAGCACGAACATGGCCGTGCTAGTTTAGGGTGTCAAAATGCCTCCACGATCCTGCAGACGCATGGCATGAGAAAGGAAGCAAGTCTCTCAGTTAAGGACTTCAGTTTCCTCTGCCCTGCTCTTCTCATGCAGATTGATTCCAAGTCTTGCATCGTGCATGAAGACGAGGACGAGCATTCAGATCATTCCCATCATCACAaacaccaccaccatcatcatgATCACCAACACCTGCAGCATCCACATAACCACACCAATGGAAGAGGCCAGAGGAACACTCCAGTCTACATCGCATGGCTTGGAGGGTTTCTCTCCATCACTCTGATCAGTTTGCTGGCGTTGGTTGGTGTGGTTTTGATCCCACTCATGAACAGAGTTTGCTTCAACTTCCTGCTGAGCTTCCTGGTGGCCCTTGCAGTGGGCACTCTGAGCGGAGACGCTCTCCTCCACCTCATACCACATTCTCAGGGTCATCACCATCACGGCCACTCTGAAGAGCACGCTGAAGAGGAGGACTCCCTTCGCCCTGTGTGGACCGGACTCACAGCTCTAAGTGGAGTTTACATCATGTTCCTCATCGAACACTTCCTGACCCTTGGCAAAATGTACAAAGACAAAAACCAGAAGGTGCAGAAGAGGGTTGATCTCACCACAGAAGTTTTGGAGTCTGAGAAACTGCCATCATTAGAAGAAAATGATGTCAAAATTGAAGCTGCTGAAACGAATGGTGGGCGTGCACTggcagaggaggaggaggtgatgTTGGGGGCGGAGCTCTACAACGACATGGACTGCGAGAACAAATGCCACTCCCACTTCCATGACACGGTTGGCCAATCGGATGagcagcatcatcatcatcacgacTACCACCACATACTGCATCATCACCACTCCCAGAACCACcacccgcacacacacacgcacagacacacacactcctactCGCAGCAGCACTTTGAGCAGGCTGGTGTGGCCACACTCGCCTGGATGGTCATCATGGGAGACGGACTGCACAACTTCAGTGATGGACTTGCCATAGgGGCGGCTTTCACAGAAGGTTTGTCCAGTGGTCTTAGTACCTCAGTCGCTGTGTTCTGCCATGAGCTTCCTCATGAACTCGGTGATTTTGCCGTCCTACTGAAAGCCGGTATGTCAGTTCGACAGGCCATGCTGTATAATCTGCTGTCAGCACTGATGGGATATCTGGGCATGATCATCGGGATTCTCATCGGACATTATGCTGAAAATGTTGCCACATGGATCTTTGCTCTCACAGCTGGGTTGTTCATGTACGTCGCGCTCGTGGACATGGTACCTGAGATGCTGCACAATGACGCGAGCGAAGCAGGTTTCAGTCACTACGGCTTCTTCCTCCTGCAGAACGCTGGGATACTCCTAGGCTTCGGCATCATGCTTATCATTGCTGTCTTTGAGGACAGGATCCAACTGGACTTAGGTTACTGACCAAAAACCTTTCCTTCACACCTAAAGACATTAACAGAAAACATCCATTATCATTGCTCTTTAACCCCTAAATCACACTTACCTGAAATCTAGCTGTTAAATGTCTCAAATCTGGTtttgtctgtaaaaaaaaaaggagaagaaaAAGTTCACAGTATTTTAATATGCACGAATTGTCTTCTTATTTGTGGCTTGCAGGAGAGAGCAATATTTATTGTGTTGACTGTTATGATGCCAGTATAAAAGAGGAAGGAGAATGTGGAgatgatttttatttgtttgttacacAGTGTTGTACAGTAGCTGAAGAGACATTCATTTTGCACATGTTGTCCCTCCAACATTCCAGTAAAATATTGAAGAATTGAGTGTC
>TCONS_00032824
CATTTACTTCGTGAAAAGACGTCTATATAATCACACCTAAGCGGTTGCCAATATGATTGGCTGGTGGCCACGCCTCTGCCCAGTGATGTCACTGGCACTGCTGTGGGCGTGTTCAGTGGGGGCGGGTTCAGACTGCAAATCTGTGGCCATTGAGACTGACAGCCGCATAGCAGAACAAACACAGCAGCGTCACCTACAGGCTCTGTTCGACAAGTATGGCCAGAACGGCAGCATCTCCCTAGAAGGCCTCTTCAACCTACTTAAAGGGGTCGGGCTTGACCGCATCCGGAAAGTGATGGTGCATCATCCTGGAAATGcccataatcacacacacacgcatgatcacacacacactcatgtggaCAAACTCACGGCGCACACACATCCGGTCACCACCAAGAAGGGAGACATGGATCACAGCGTGGAGAAGAGTGACCCTGTCCCAAAAGCACAGCCAGATCCTGCCTCTGGGAAGAAAAGCCAGTCAGATGCGCATCACAACCTGTACATGAAGATGAACCAGGAATCCACCACAGCTTTGACTACGCCGTCATATGTTACCAGATCACGGCGGACCAATCGCAGCGCCGATTATGATTTTACACAGGACCACGCCTCCTTTAGCCCCAGTCAGCCCAATGTGACACACTCAAACCACACCCATCATGATGAGGACACGCCCACACACCAGCATGATGACCATGATGAGCACGAACATGGCCGTGCTAGTTTAGGGTGTCAAAATGCCTCCACGATCCTGCAGACGCATGGCATGA

Function

symbol description
slc39a6 Predicted to enable zinc ion transmembrane transporter activity. Acts upstream of or within cell migration involved in gastrulation and epithelial to mesenchymal transition. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC39A6 (solute carrier family 39 member 6).

GO:

id name namespace
GO:0006882 cellular zinc ion homeostasis biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0071578 zinc ion import across plasma membrane biological_process
GO:0001837 epithelial to mesenchymal transition biological_process
GO:0055085 transmembrane transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006829 zinc ion transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046873 metal ion transmembrane transporter activity molecular_function
GO:0005385 zinc ion transmembrane transporter activity molecular_function

KEGG:

id description
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-030131-3023 Predicted to enable zinc ion transmembrane transporter activity. Acts upstream of or within cell migration involved in gastrulation and epithelial to mesenchymal transition. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC39A6 (solute carrier family 39 member 6).

Ensembl:

ensembl_id ENSDARG00000068143

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032823 False 2602 mRNA 0.50 11 42156286 42173834
TCONS_00032824 True 776 mRNA 0.53 3 42168528 42173984

Neighbor

gene id symbol gene type direction distance location
XLOC_016733 trim55a coding downstream 27572 42114310 ~ 42128714 (-)
XLOC_016732 adhfe1 coding downstream 46711 42095487 ~ 42109575 (-)
XLOC_016731 si:dkey-97a13.12 coding downstream 64360 42088456 ~ 42091926 (-)
XLOC_016730 cspp1b coding downstream 84728 42068158 ~ 42071558 (-)
XLOC_016729 cspp1b coding downstream 91217 42039036 ~ 42065069 (-)
XLOC_016735 apom coding upstream 54757 42228741 ~ 42234561 (-)
XLOC_016736 ftr07 coding upstream 138905 42312889 ~ 42314218 (-)
XLOC_016737 si:dkey-7l6.3 coding upstream 180659 42354643 ~ 42360414 (-)
XLOC_016738 gtpbp4 coding upstream 187389 42361373 ~ 42375275 (-)
XLOC_016739 slco5a1a coding upstream 208488 42382472 ~ 42396592 (-)
XLOC_016727 BX663525.2 non-coding downstream 172530 41972537 ~ 41983756 (-)
XLOC_016725 BX663525.1 non-coding downstream 209390 41945975 ~ 41946896 (-)
XLOC_016722 NA non-coding downstream 384245 41751840 ~ 41772041 (-)
XLOC_016718 NA non-coding downstream 637946 41504477 ~ 41518340 (-)
XLOC_016717 BX890557.1 non-coding downstream 734564 41421606 ~ 41421722 (-)
XLOC_016743 NA non-coding upstream 421940 42595924 ~ 42597593 (-)
XLOC_016745 NA non-coding upstream 491918 42665902 ~ 42748662 (-)
XLOC_016746 NA non-coding upstream 504039 42678023 ~ 42678382 (-)
XLOC_016747 NA non-coding upstream 534685 42708669 ~ 42710429 (-)
XLOC_016748 NA non-coding upstream 539815 42713799 ~ 42717726 (-)

Expression


Co-expression Network