XLOC_016735 (apom)


Basic Information

Item Value
gene id XLOC_016735
gene name apom
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42228741 ~ 42234561 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032825
AGTCAGAAGACATCAGCACTTGTGTGTCGCAGTCATGATTGCAGCTACGTTATGGGGTCTTGTCAGCTCAGTAATGGGCCTATTTTACGTTGGGTTGCAGGTCATGGTTCCGtgtcttcctccagctcctctctCCACCTCTGTTATTAATACTGATGAGTATACCGGCACTTGGTATTTTGTGGCAGCAGCTGTGTGGGATGAAGATGATCTGAAGACTCTCCAGACCACAGACAGCATAGTTCTTCAGATCCAGAAAAACAGCGACTCCACCCTGAAGGTCACTGAAACCATGCGCATTGGAGATGCGTGTCTAAAAAATGTTACGAACTACTATGCATTGCCTGCGACAAGCCCTTTCCTGTTCAGAGAAGATTTCGATACTATTGCGGTGATCTGGGACGGCAAGTACATAAACTGCCCCACGTGCATCATCATGCTGTATGTGGGCGAAGATGAGGAAATGAATACGTTTCTATTTTCTCGCGATGAAAAAACAACAGAAGAGGCGATACAGGAATTTAAGTCAAAAACTGAGTGTTTGCTAATGGAAGATATGTGGAGGGCACCGCTGAAAAATGGCTATTGTAAAGTTGATGATTCTGCCTAAACACGAGGCAGAGATCCTCACAGTGCAGATCTACAATCAAATACCAAACTGATGGACATTTGGTCTCTTATTTGATGTTATTATGAAGGACATTGTTTCAAAATTAATAAAAGCAATTTTCCAATAAA
>TCONS_00032826
TGTGTTAAAACATCTCAGTCAATCAATCGTTGTGTCAGTCAGAAGACATCAGCACTTGTGTGTCGCAGTCATGATTGCAGCTACGTTATGGGGTCTTGTCAGCTCAGTAATGGGCCTATTTTACGTTGGGTTGCAGGTCATGGTTCCGtgtcttcctccagctcctctctCCACCTCTGTTATTAATACTGATGAGTATACCGGCACTTGGTATTTTGTGGCAGCAGCTGTGTGGGATGAAGATGATCTGAAGACTCTCCAGACCACAGACAGCATAGTTCTTCAGATCCAGAAAAACAGCGACTCCACCCTGAAGGTCACTGAAACCATGCGCATTGGAGATGCGTGTCTAAAAAATGTTACGAACTACTATGCATTGCCTGCGACAAGCCCTTTCCTGTTCAGAGAAGATTTCGATACTATTGCGGTGATCTGGGACGGCAAGTACATAAACTGCCCCACGTGCATCATCATGCTGTATGTGGGCGAAGATGAGGAAATGAATACGTTTCTATTTTCTCGCGATGAAAAAACAACAGAAGAGGCGATACAGGAATTTAAGTCAAAAACTGAGTGTTTGCTAATGGAAGATATGTGGAGGGCACCGCTGAAAAATGGCTATTGTAAAGTTGATGATTCTGCCTAAACACGAGGAGATCCTCACAGTGCAGATCTACAATCAAATACCAAACTGATGGACATTTGGTCTCTTATTTGATGTTATTATGAAGGACATTGTTTCAAAATTAATAAAAGCAATTTTCCAATAAA
>TCONS_00032827
CAGCTACGTTATGGGGTCTTGTCAGCTCAGTAATGGGCCTATTTTACGTTGGGTTGCAGGTCATGGTTCCGtgtcttcctccagctcctctctCCACCTCTGTTATTAATACTGATGAGTATACCGGCACTTGGTATTTTGTGGCAGCAGCTGTGTGGGATGAAGATGATCTGAAGACTCTCCAGACCACAGACAGCATAGTTCTTCAGATCCAGAAAAACAGCGACTCCACCCTGAAGGTCACTGAAACCATGCGCATTGGAGATGCGTGTCTAAAAAATGTTACGAACTACTATGCATTGCCTGCGACAAGCCCTTTCCTGTTCAGAGAAGATTTCGATACTATTGCGGTGATCTGGGACGGCAAGTACATAAACTGCCCCACGTGCATCATCATGCTGTATGTGGGCGAAGATGAGGAAATGAATACGTTTCTATTTTCTCGCGATGAAAAAACAACAGAAGAGGCGATACAGGAATTTAAGTCAAAAACTGAGTGTTTGCTAATGGAAGATATGTGGAGGGCACCGCTGAAAAATGGCTATTGTAAAGTTGATGATTCTGCCTAAACACGAGGGTAAGTGCAAACACTGGCtttcatattttctttttaatgataaaaatcacttttgtttttattattaatatttttctatcaTGCTTATATCACAAGCAGAGATCCTCACAGTGCAGATCTACAATCAAATACCAAACTGATGGACATTTGGTCTCTTATTTGATGTTATTATGAAGGACATTGTTTCAAAATTAATAAAAGCAATTTTCCAA

Function

symbol description
apom Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Is expressed in liver.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-010605-5 Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Is expressed in liver.

Ensembl:

ensembl_id ENSDARG00000076838

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032825 False 738 mRNA 0.43 7 42228741 42234525
TCONS_00032826 False 771 mRNA 0.43 7 42228741 42234561
TCONS_00032827 True 789 mRNA 0.41 6 42228745 42234484

Neighbor

gene id symbol gene type direction distance location
XLOC_016734 slc39a6 coding downstream 54757 42156286 ~ 42173984 (-)
XLOC_016733 trim55a coding downstream 100027 42114310 ~ 42128714 (-)
XLOC_016732 adhfe1 coding downstream 119166 42095487 ~ 42109575 (-)
XLOC_016731 si:dkey-97a13.12 coding downstream 136815 42088456 ~ 42091926 (-)
XLOC_016730 cspp1b coding downstream 157183 42068158 ~ 42071558 (-)
XLOC_016736 ftr07 coding upstream 78328 42312889 ~ 42314218 (-)
XLOC_016737 si:dkey-7l6.3 coding upstream 120082 42354643 ~ 42360414 (-)
XLOC_016738 gtpbp4 coding upstream 126812 42361373 ~ 42375275 (-)
XLOC_016739 slco5a1a coding upstream 147911 42382472 ~ 42396592 (-)
XLOC_016740 slco5a1a coding upstream 164641 42399202 ~ 42415902 (-)
XLOC_016727 BX663525.2 non-coding downstream 244985 41972537 ~ 41983756 (-)
XLOC_016725 BX663525.1 non-coding downstream 281845 41945975 ~ 41946896 (-)
XLOC_016722 NA non-coding downstream 456700 41751840 ~ 41772041 (-)
XLOC_016718 NA non-coding downstream 710401 41504477 ~ 41518340 (-)
XLOC_016717 BX890557.1 non-coding downstream 807019 41421606 ~ 41421722 (-)
XLOC_016743 NA non-coding upstream 361363 42595924 ~ 42597593 (-)
XLOC_016745 NA non-coding upstream 431341 42665902 ~ 42748662 (-)
XLOC_016746 NA non-coding upstream 443462 42678023 ~ 42678382 (-)
XLOC_016747 NA non-coding upstream 474108 42708669 ~ 42710429 (-)
XLOC_016748 NA non-coding upstream 479238 42713799 ~ 42717726 (-)

Expression


Co-expression Network