XLOC_016739 (slco5a1a)


Basic Information

Item Value
gene id XLOC_016739
gene name slco5a1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42382472 ~ 42396592 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032834
AGCTCAAGAACATTGATGAtcgtctttttgtgtgtgtgtttagccaTTATGTATGTCATGGGCGCTCTCGGACCTGCTGCTGGGTATCTTCTGGGTGGCATTCTGATCGGATTCTACGTCGATCCTGGTACTGTTGTCAATATTGACCAGGGTGACCCGCGCTTTGTAGGAAACTGGTGGAGTGGCTTTCTGCTGTGTGCCGTGGCAATGCTGCTGGTCATCTTCCCCATGTTCTCCTTCCCTAAAAAACTGCCACCACGCCAAAAGAAAAGTAAGAGAGGTGTGAAGAAGGGTGCAGGTGACGTCTCCAGCGACGATGAGATGATGAAGGAGAAGAGCCAAGCGGTCTCGTCCTCTATGGGTTTCGGCAAAAATATCAAAGATTTGCCAAAAGCAGCCGTGCGCATATTGAGCAACGTGACGTTTTTGTTCGTCAGTTTGTCGTATACAGCAGAATGTGCCATCGTCACAGCCTTCATCACTTTCATCCCCAAATTTATTGAATCTCAGTTTGGTGTTCCAGCATCCAGTGCCAGCATTTACACAgGTCTGATCATCGTACCCAGTGCAGGTGTTGGCATATTTTTAGGTGGTTACATTATTAAGAAACTCAAACTGGGCGCAAGAGAAGCTGCGAAGTTGGCCATGATCTGCAGCGGCGTGTCTTTGCTCTGCTTCTCCACGCTTTTCATCGTCGGCTGCGAAAGCATCAACCTCGGTGGAATCAACATCCCTTACACCACTGGGCCCACACTGACTCTGTCTCACCGGAACCTGACGGGAAGTTGTAATGTGAACTGTGGCTGTAAGATTCATGAATACGCACCCGTCTGCGGCTCTGACGGCATCACATACTTCAACCCCTGTCTGGCTGGATGCAGCAACATCGCCAACCACACCTCAGGAATCAGAAACTATTCGGACTGCGCATGCGTTCAGAGTCGTCAGGTGATCACGCCGTCAGGAGGAAACCACGAGCTGCAGCTGGTGATCGTCAAGACGTACCTAAACGAGAACGGCTTCGCTCTGGCGGGAAAGTGTGAACGCACCTGTGGGACTCTCATCACCTTCCTCATCTTCCTCTTCATCGTCACGCTCATCACCGCCTGCGCTCAGCCCTCCGTCATCATTGTTACGCTCAGGTCAGTGGATGAAGAGGACAGGCCGTTTGCTCTGGGAATGCAGTTTGTTCTTCTCAGGACTCTTGCCTACATCCCCACTCCTATCTATTTTGGAGCTGTGATTGACACCACCTGTATGCTGTGGCAGCAGGACTGTGGTTTCCATGGGTCCTGCTGGGAGTACGATGTCACTTCCCTCCGCTTCGTCTACTTTGGTCTAGCAGCGAGCTTGAAGTTCCTGGGCTTCCTGTTCATCTTCCTCACTTGGTATTCGCTGAAGCGTCGCGAGgagcagacgcacacacacacgcaccagcACACACTTTCCACGCTGGACACAGTAAGCCATCTCATCTGCCACGCTGGAGGCCACAAAGGCCACGCTCGCACCCGCTCATGTCCCGTCTTCCTGCCACGGCCATTTGAACACTCCCACAATGCAGGGCCACCAGGACATGCTCTGAGCCGTGGCAACAGCTGCCCTGGCAACGGCCTGAAAGCAATAACTCCGCCCATacgctctctggagaaagtggcCGTGTGATGGTTTGCCGCCACACACTCTCGTACGCTCATACACATGCATGCCGACATTGTACAATTATGAGGGACGATTATTATGTAAACAGACCACACCGCTTAAAGCCAATGCCGGTGCCTTTTTAAAACGCATACACACACGATTCAGACACATTATAACAGGATTATCGCGAAGCACTGATTagtaataaaactttttttttttacacaataccTCAGAAGGACGAATACCTCTAATTATCGTCACACaaataaagacacacacacacacactagaacaTATTTAACATAGTCGCCACATACAGTTACCTATAGTGTTATTGTTCATATACTTTTCTGCTTCTCCTGTCCAGCAGATTCATGAACATTTGCCTCATCCATTCAACCATTCATGTGTCAACAGTGAAGGGAAAGAGACTGCAAATGTTACTATGCAAACTCCTCCCACAGCACTGATCCCTTGTGAATTATATTAGCCTCTTTTACACTTCAAGCCCCTCCCACAATTAGATTTATTCACCACACCTTGTCTGAAAACTCCTCCCACAGCACTTCTGAATTACTTTAGCCCCTCTCAAACTTTAAGCCCTTCTGCTTTATTACATAGACTGGCCACACCCATTCCGCAAGCTCCTCCCACAGCACTGTCTCTTTCTGAATTACTTTAGCACCTCCCAAACTTTAAGCCCTGCCCCTTTAATTACATAAACTGGCCACAACCAGTCTGCAGGCTGCTCTCACAGCACTGACTCCCTCTGATTTATATTAGCCCCTCCTACATTTTAAACCCCTCTCCTAGATCACATTTATTCACCACACCCAGTCTGTAAACTCCTCCCACAGCACTGTCTCCTGAATTACTTTAGCTCCTCCCAAACTTTAAGCCCTGCCCCTCAATTACATATACTGGCCACGTCCAGTTTGCTGGCTCCTCTTATAGCACTGACTTCTTCTGAACCATATTAGCCCCTCCTACACATCAAGCCACATTTATTCACCCCACCCAGACTGCAAACTCCTCCTACAGCACTGTCTCCTGAATTACTTTAGCCCCTCCCAAACTTTAATTCCTTCCCTTACATAGTCTGGCCACAACCATCCTGCAAGATAATCCCACTGTACTGATTCCTTCTGAATTATATTAGCTCTTCCTACACGTCAAGCCCCTCCCCTAAATCACATTTATTCACCACACCCAGACTGCAAACTCCTCTCGTAGCACTTACGCTTTTTGAATTACTTTAACCCCTCCTAAAATTTAAGCACTTTTCCTAAATTACATAAACTGGCCACAAACAGTCTGCAGGCTCCTCTTACAGCACTTATTCCTCCTGAACCATATTAGCCCCTCCTACACGTCAAGACCCTCCCTTAAGTCACATTTACTCACCGCACTCAGTCTGCAAACTCCTTCTGCAGCGCTTTCTCCTTCTGAATTACTTTAGCCCCTCCCAAACTTTAAGCCCTTCCCCTAAATTACATATACTGGCCACACCCAGGCTGTAAACTCCTCCCACAGCACTTTATTTTCCTGAATTGCATTAGCTCCTCCCACTCTTCAAGCTCCTCCCCTAAATGGCTTATATTTACCACACCCAGGCTTTAAATTTCTTCCACAACAGTGACCTCCCCTGAATTGCATTAGCCCATAAGAAACTTTAATTAACGCCCCAAATTACATTCATTGACCAATCCCGTTATGTTAACTCCTCCCACAACAGACTTCTCCTGAATTCTGAAATGTCAAGCCACTCCTTTACATGACAAATACTGGCCACACCCAGGCCGTGAACTCCTCTTACAGCACTTTACCTGAATTGCATTAGCCCCTCCCCTAAATGGCATATATTTACCACACCCAGGCTTTAAACTCCTCCCACAACAGTGACTCCTCCTGAATTGCAGTAGCcacacacattttaagctatATGCCTAAATAATATATGCACATCAACCAGGCTCCACCCACAATGGTCTCCTCCTGAATCCCATTAGCCCCTCCCAAACTTTAGGCCACTCCCCTAAATGACATTGGACACACCCAGGCTGAGTACAATTCATCTCAAACAGTGTGGATTGATTCCTCCCGAACTTCAAACTCCACCATTTAGACTCCGCCTTGTTTCATTTCTTTTCTCTCGAGTGGTGTGTTAAATGTTTAGACTTCTAGTCTTACGATGACGGTGTGTTTTTGTTCAGCTTTCTGCGTCCCTTCATAACTTTTGTGGATCATATCAGTATTCAGAAGAGTTCGCTCTGTCAGTGTTGACTGTATATTGGTGGTCATCTCAATAAATGACACGCACAAACACAACAAGTATCTAGGAGACGCATCATCTCATGTTCACCCACATCATGTACTCTTGAAAACATGCTCTCACACCCCTGTGGAAGGTGTTGTGTTTGCTCTGAAGTTGAGCCAGTGTTAGTGGTGTTAATGGACACATGAAGACCGCAGGATTTACACACCAGTGAACTACTGCTGAGGAAACAGTGTTTCATATTCCTCTCCTCTCTTTTTCCCCCTCCCTATGTTACTGTGCTCTGTTAGCAAACAGACGACACGTCaatctgattatttatttaaagttacttGAAGGTTTTGTCCAATCGGGGCAAACCTGGAGAAATTCTTTATTAActgttttgtttaacttgtacAAAGGATTtgtgtcaataaaataaaatgattttgatTGTGTACTGCGA
>TCONS_00032835
ATTTGCCAAAAGCAGCCGTGCGCATATTGAGCAACGTGACGTTTTTGTTCGTCAGTTTGTCGTATACAGCAGAATGTGCCATCGTCACAGCCTTCATCACTTTCATCCCCAAATTTATTGAATCTCAGTTTGGTGTTCCAGCATCCAGTGCCAGCATTTACACAgGTCTGATCATCGTACCCAGTGCAGGTGTTGGCATATTTTTAGGTGGTTACATTATTAAGAAACTCAAACTGGGCGCAAGAGAAGCTGCGAAGTTGGCCATGATCTGCAGCGGCGTGTCTTTGCTCTGCTTCTCCACGCTTTTCATCGTCGGCTGCGAAAGCATCAACCTCGGTGGAATCAACATCCCTTACACCACTGGGCCCACACTGACTCTGTCTCACCGGAACCTGACGGGAAGTTGTAATGTGAACTGTGGCTGTAAGATTCATGAATACGCACCCGTCTGCGGCTCTGACGGCATCACATACTTCAACCCCTGTCTGGCTGGATGCAGCAACATCGCCAACCACACCTCAGGAATCAGAAACTATTCGGACTGCGCATGCGTTCAGAGTCGTCAGGTGATCACGCCGTCAGGAGGAAACCACGAGCTGCAGCTGGTGATCGTCAAGACGTACCTAAACGAGAACGGCTTCGCTCTGGCGGGAAAGTGTGAACGCACCTGTGGGACTCTCATCACCTTCCTCATCTTCCTCTTCATCGTCACGCTCATCACCGCCTGCGCTCAGCCCTCCGTCATCATTGTTACGCTCAGGTCAGTGGATGAAGAGGACAGGCCGTTTGCTCTGGGAATGCAGTTTGTTCTTCTCAGGACTCTTGCCTACATCCCCACTCCTATCTATTTTGGAGCTGTGATTGACACCACCTGTATGCTGTGGCAGCAGGACTGTGGTTTCCATGGGTCCTGCTGGGAGTACGATGTCACTTCCCTCCGCTTCGTCTACTTTGGTCTAGCAGCGAGCTTGAAGTTCCTGGGCTTCCTGTTCATCTTCCTCACTTGGTATTCGCTGAAGCGTCGCGAGgagcagacgcacacacacacgcaccagcACACACTTTCCACGCTGGACACAGTAAGCCATCTCATCTGCCACGCTGGAGGCCACAAAGGCCACGCTCGCACCCGCTCATGTCCCGTCTT

Function

symbol description
slco5a1a Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in sodium-independent organic anion transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in plasma membrane and secretory granule. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; gill; liver; pleuroperitoneal region; and skeletal muscle. Orthologous to human SLCO5A1 (solute carrier organic anion transporter family member 5A1).

GO:

id name namespace
GO:0035773 insulin secretion involved in cellular response to glucose stimulus biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0043252 sodium-independent organic anion transport biological_process
GO:0030141 secretory granule cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0015347 sodium-independent organic anion transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090316-1 Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in sodium-independent organic anion transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in plasma membrane and secretory granule. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; gill; liver; pleuroperitoneal region; and skeletal muscle. Orthologous to human SLCO5A1 (solute carrier organic anion transporter family member 5A1).

Ensembl:

ensembl_id ENSDARG00000086104

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032834 False 4370 mRNA 0.47 8 42382472 42396592
TCONS_00032835 True 1147 mRNA 0.53 6 42385313 42393590

Neighbor

gene id symbol gene type direction distance location
XLOC_016738 gtpbp4 coding downstream 7197 42361373 ~ 42375275 (-)
XLOC_016737 si:dkey-7l6.3 coding downstream 22058 42354643 ~ 42360414 (-)
XLOC_016736 ftr07 coding downstream 68254 42312889 ~ 42314218 (-)
XLOC_016735 apom coding downstream 147911 42228741 ~ 42234561 (-)
XLOC_016734 slc39a6 coding downstream 208488 42156286 ~ 42173984 (-)
XLOC_016740 slco5a1a coding upstream 2610 42399202 ~ 42415902 (-)
XLOC_016741 esyt2a coding upstream 23249 42419841 ~ 42492445 (-)
XLOC_016742 dip2cb coding upstream 99906 42496498 ~ 42558549 (-)
XLOC_016743 NA coding upstream 199332 42595924 ~ 42597593 (-)
XLOC_016744 myo10 coding upstream 208660 42605252 ~ 42705284 (-)
XLOC_016727 BX663525.2 non-coding downstream 398716 41972537 ~ 41983756 (-)
XLOC_016725 BX663525.1 non-coding downstream 435576 41945975 ~ 41946896 (-)
XLOC_016722 NA non-coding downstream 610431 41751840 ~ 41772041 (-)
XLOC_016718 NA non-coding downstream 864132 41504477 ~ 41518340 (-)
XLOC_016717 BX890557.1 non-coding downstream 960750 41421606 ~ 41421722 (-)
XLOC_016745 NA non-coding upstream 269310 42665902 ~ 42748662 (-)
XLOC_016746 NA non-coding upstream 281431 42678023 ~ 42678382 (-)
XLOC_016747 NA non-coding upstream 312077 42708669 ~ 42710429 (-)
XLOC_016748 NA non-coding upstream 317207 42713799 ~ 42717726 (-)

Expression


Co-expression Network