XLOC_016740 (slco5a1a)


Basic Information

Item Value
gene id XLOC_016740
gene name slco5a1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42399202 ~ 42415902 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032836
gtctcctcctctctctctctctctctctctctctctctctctctctctctctctcatttatcTCCGTACCgtctccatccatccttccatccccCATCTCCTCTCCTCAGACCACGCAGAAAGAAGGAAGCCCTCCTCTGGGATGGATTTATAAACTCGCGGCTGAGATGGACGCCTGATCTGAGGGATGGAGTCTTTTCACCTGTTTCTCGCCATCCTCGCGCTTCGGGCAAGTCTCGCCCCCGCGGCCGACCACAAATTCGgcTGCCTGTTTGAGGATGGTCTGTGTCTGAAATATGAAGTCTGTTTAAAtgATGGCATGTTGGGCCGCTGCGAGGCTGCTCCTCTAACAAACGTCTACACGTATGACGTCACTCCCGCAACGGTGCAGAGATTGCGAAACCTGCTCCAGAGACTGGCACACAGAGGTTTGTCTTGGGAGGATGATGTCACGCAGCAGATTTTATCGAATGAGTTCTCCAAACTACGCCGAGTTTCCCTTCCGTTACCGGAGcctagGCCGAAGGGTTATGAGATTGCTTTTGGAGACAGAAGAATGAAATCATCATCAGATGCTGAGGTTAAAAACACACTGAAATACCTGCAGCACCTGTTACTGCTACCAAAAACAGCACTGCACAAGGGGGCGGAGCTTCAGTACTATCGCTCTGGAAAGCCACGCCCTGAAAGTGACTCCTCCCCACCTGAGTTTATTCCTGAAGTGCCGTATCAGTCAAAGTCTTACCCGGACCTCAGCCGATACCAGAGTGATGCCACACAAGCTCCCCTGCAGGAGGAGAAATCTGACCTGCTCAAAGCAGCTCTTCAGAAATATCTGTCCAAGACCAAACAACCTGATGTGGGAGAAACATCCAGAGCAGACCGGATCTTCCTAAAAGATGGACCAGCAAAGCCTTCTGCTGGTGACCCTCTTACTCCTGTTGATGAGTCCTTTATCTGGAAAGTTCTGCGAAACGTGGGCCGGCACAGTGTGGATGTGAAGAGTTTAAAGTCTGGGGATCTGGATAAGCTTGCTGTCCTCATCGCAGATGCTCTGCAGGTGGTGGATCAACAGGCCGGTCAGGCAGAAACACCCAGAGACCTGGACACACAGCAGGACCCGGAAGATGAGACAGAAGATGTGCAATATCAGGACCAGCAGCCTGAAAGCTACTCAGAGGAGCAGACCCCTGAAGACAGTGCACAGAAAGAGGTGGAAAGTCCTTCAGTCACTCAAAAGACTGTTCAAACCATCCCAACTGTGACAGAGAGACAGACATTAGAGGAGGAGAAGAGAACTATGGACAATAAG
>TCONS_00032837
CGCAGAAAGAAGGAAGCCCTCCTCTGGGATGGATTTATAAACTCGCGGCTGAGATGGACGCCTGATCTGAGGGATGGAGTCTTTTCACCTGTTTCTCGCCATCCTCGCGCTTCGGGCAAGTCTCGCCCCCGCGGCCGACCACAAATTCGgcTGCCTGTTTGAGGATGGTCTGTGTCTGAAATATGAAGTCTGTTTAAAtgGTTGAagattaagagtttttttttttttttttttgctggcacGATGTGTTCCCACACTCACCTGCCATCAATGAGAACATAATATGAATGAAATCATCATTCCCATATGGCATGTTGGGCCGCTGCGAGGCTGCTCCTCTAACAAACGTCTACACGTATGACGTCACTCCCGCAACGGTGCAGAGATTGCGAAACCTGCTCCAGAGACTGGCACACAGAGGTTTGTCTTGGGAGGATGATGTCACGCAGCAGATTTTATCGAAT

Function

symbol description
slco5a1a Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in sodium-independent organic anion transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in plasma membrane and secretory granule. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; gill; liver; pleuroperitoneal region; and skeletal muscle. Orthologous to human SLCO5A1 (solute carrier organic anion transporter family member 5A1).

GO:

id name namespace
GO:0035773 insulin secretion involved in cellular response to glucose stimulus biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0043252 sodium-independent organic anion transport biological_process
GO:0030141 secretory granule cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0015347 sodium-independent organic anion transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090316-1 Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in sodium-independent organic anion transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in plasma membrane and secretory granule. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; gill; liver; pleuroperitoneal region; and skeletal muscle. Orthologous to human SLCO5A1 (solute carrier organic anion transporter family member 5A1).

Ensembl:

ensembl_id ENSDARG00000086104

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032836 False 1312 mRNA 0.51 8 42399202 42415902
TCONS_00032837 True 464 nonsense_mediated_decay 0.49 5 42404061 42415788

Neighbor

gene id symbol gene type direction distance location
XLOC_016739 slco5a1a coding downstream 2610 42382472 ~ 42396592 (-)
XLOC_016738 gtpbp4 coding downstream 23927 42361373 ~ 42375275 (-)
XLOC_016737 si:dkey-7l6.3 coding downstream 38788 42354643 ~ 42360414 (-)
XLOC_016736 ftr07 coding downstream 84984 42312889 ~ 42314218 (-)
XLOC_016735 apom coding downstream 164641 42228741 ~ 42234561 (-)
XLOC_016741 esyt2a coding upstream 3939 42419841 ~ 42492445 (-)
XLOC_016742 dip2cb coding upstream 80596 42496498 ~ 42558549 (-)
XLOC_016743 NA coding upstream 180022 42595924 ~ 42597593 (-)
XLOC_016744 myo10 coding upstream 189350 42605252 ~ 42705284 (-)
XLOC_016745 NA coding upstream 250000 42665902 ~ 42748662 (-)
XLOC_016727 BX663525.2 non-coding downstream 415446 41972537 ~ 41983756 (-)
XLOC_016725 BX663525.1 non-coding downstream 452306 41945975 ~ 41946896 (-)
XLOC_016722 NA non-coding downstream 627161 41751840 ~ 41772041 (-)
XLOC_016718 NA non-coding downstream 880862 41504477 ~ 41518340 (-)
XLOC_016717 BX890557.1 non-coding downstream 977480 41421606 ~ 41421722 (-)
XLOC_016746 NA non-coding upstream 262121 42678023 ~ 42678382 (-)
XLOC_016747 NA non-coding upstream 292767 42708669 ~ 42710429 (-)
XLOC_016748 NA non-coding upstream 297897 42713799 ~ 42717726 (-)

Expression


Co-expression Network