XLOC_016748


Basic Information

Item Value
gene id XLOC_016748
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42713799 ~ 42717726 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033920
ctttggacttgagggggaaaaCAGACCACCCAAacgaaacccacgtgaacacggggagaacatgcaaactccacacagaaatgccaactgacccagctgaggctcaaaccaatgaccttcttgctgtgaggtgacagtgctaaccactgcaccaccgcggCACCCATGACATCATATGACACTTGTAAATGTAAGGCTTACCTCTGTCAGATATAATTTCTAACTCGTCTCTGCAGAAATGCTCCAGTTTCTCTCTCAGAAGAGACAAAGATTTACCAACATCTTCAAAAGAGAGACGAGAGCTGACAGCGATGCTGGATGAGTCTGTGGATCCAGGAGGAGCAGAGAGAGACTGGAAACTCTACACAGACACAACAAAAACAGCAGCTAAAGACACACAAACATCTGACAGAAACACAATCTCTGCACAACATGCTCTTCCACTGTGCTGTTTGCAGATCTGTGTTACCTGGAGGAAATGAATGTGATGGTCTGTGTGTGAAAGCTGCTCCAGCTCAGCGTCTCTCCTCCTCAGATCATCAATCTCCTGTTCGAGTCGCTCCAGTCGTCCTTCAGCTCCACTCACTGCAGCCTTTTCCTGATCTCTGATCAGCTGTGTCAACCCAGAGCGGTTTCTCTCAATGAAGCGGATGAGCTCAGTAAAGATCCTCTCAGTGTCCTCCACTGCTGCCTGTGCAGAGCACTGTTaggacacacagagagagaagcaGCAGAATCAGTCATTCACTCAGCTCTTACTGCTGCCTCCCACAGCCTGTTCCCCACAGGGGCTTCAGTAGGACTGGAAGTGCTCCAGCACTGGGCTCCCCACTGACTGACTGCAGGACAGTGCTAACTGAGTCTCAATCAGCTCTTCCAGCAGCCAACAGATAACAAACACAGCGCTGGTCAGTACGGCAAAAGAACTCCAGTAGTTTCTCATGTTGAGGGCAGATCATCTCCTGCAGTCGTCCAGTGGCGTCCATCAGATTGTGTCTTTTACCTCTGAAGAAACTCTCGTGTTGTTCAAGATGATTTTGGCAGTAAGAGTTCAGACACACCAGACACGACTTGATGGCTTTATTTTTATCTCCAGTACAAACACCACACTCCACATCTGCAGATTCAGAGTAACACTGAGCAGGACGAGCAGCTTGTAGTTTGGTCTTCTTGAGTTTCTCCACAACTTCAGTCAGCATGGTGTTTTTCCCTAAAGCAGGTCTTGGAGTGAAGGTCTGTCTGCACTGAGGGCAGCTGTAGACTCCCTTCTGCTCATCCTGATCCCAGCAGTCTGAAATACAGCTCATACAGTAACTGTGTCCACAGGGAATGGCCACTGAATCCTTTAGCAGCTCCAAACAGAGGGAACAGTTGAACTGATCCTGAGCCAAGGAAAGTGTGGATTCTGCCATTTTACTAAATACAGAAGCTCAAAAATAGCTTAGACCATAGAAATAGAAACACAAAGCCATTGAATTCTCCTCAACACTGAGCAGGaagtcaaaaaataaagtaataaatcacATTGAAGGTAGGAGTGGTGTTAAGACTAATGTTCAAAGTTTAAACATCAAGAAATTTATGAGTTACCTTTACTCCCATGAATCTCTATAATATCTGCAGTGCTTTTCAAACGGAACCACATGCAGGCTGTGCAAATGATCTTGTTGTGTATGTAGATGGTGAAAAATCTCTTGGCAAGAGAATAAAAATGGATTCCTCCTTTTGATTATACACATTTAAACTTTGATTATCAGCTCAAACACTATATGAAAACATTAAATCGCAGATAATTTTAACaacttaaagggcatctatgatggAAATCATCTTTTGTCAGCTGTTTgggcagaactgtgtgtaggtatagtgtctccattgtcatattagggtgatataaagacaataattcttttttttctgatgttaaaataggatccagatccctcccattttgaagcTGACTGCAACTTAATGTAGGTTTCCACGCCCaatgaattgattgacagccacattttaacatgtctccgtagtaatgcatGTAATCATATCAACAGGACaagacatgcgcaaagcaactggaataaaaagatttgtttaaCTTGCtgtaatcatcatcaaatgtgattaagaatgagttttacaagtttaaaatgcttttaaaacagctagtgcatgtttgtaatgaattagtGATTTTATCGTCTTTATCACaacagccacatgtcagtacaattataaaagaagacacttcaatcccagtttgtggacgttaaatcaggtttattttgtacattaacataacgaatGTCCAtatagcagtggatattaacatgtatgctGTCACATTTGTGTGCAAAAACAGAGCAAAGGTAAACGCacgcgctgtgtgtgtgtgtccgctgtgtatgtatgtgtgcacgtGAACTTTGTtgacgacattgtgtgtgactcatcattgcagaaaggcttgaattagcttgaaaacaaatacatcaaatatataatggtaaagttcttactgtagtatttctcacaaacattacgtgagatctgcttccttcatgtctgtcactgtgctgtttatctgatgcagccaagGCGGAAAATAGAGCAGAAAATTCTAATGttcagtgttttgagctgaatctttacagacacattctggagacacaaaaggcatcttaaatcttgaaaagtggtaaaataggtgccccttAAATCggccttaggccgtactcacactaggtacagttgcctcaaaccgggccaaagcatgcttgtcccccctcccgtctcccctgacggcccgcgctcacaccacaaacgggcctcggtacgcttacgtcatcgctgctgcgctgttcagtgagaagcactcttACTCAGCAGtgcagtggagatttctttagttatatcgtttctgtcatttgatatgcagtgagaTTGCAgacaaatatttcaccaaacagtccttagcgatgcggtgacacacagtcagatatttcgctcataaacaatcataaagctctcgtgctgcaggaacgaggaggtctgctgaaggcacgcagctgtcatgcagtgaggggtttgcgtctttaataaactacggcagtttgcgtttacagaacagtaagaatgattaataaatccatataaaacagccccttaaaagtcacgtctcgctttcagttttgggctttggcgcgttttgcactcacacacaagcgtaccgtgccaaagcccaattgaaccgcactcaggcacacctcttccaaccgggccagggccggccaagtgaacagtGCTTGAGctcgattcagcgcactcacacttctcaaacgatccgggaaacgggcctgggcatggtacggatggcatagtgtgagtaggccctaagtgtcaatgcttaataatataattttaaaatccaATTAAATGTTTTAGTTCTGTGAGGTGAAGGAAAAGtgtcaaaaataaatagtaaacatCAATGCATCTTGTCAATAaaattgttaatgatttatttaatgtatactatatcaaactgttttattttttgatcATATTTgatatttcttttgttttatagagaCTGTTCAGGTGGA

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006996 organelle organization biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0051276 chromosome organization biological_process
GO:0006259 DNA metabolic process biological_process
GO:0010564 regulation of cell cycle process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033920 True 3608 lncRNA 0.43 2 42713799 42717726

Neighbor

gene id symbol gene type direction distance location
XLOC_016747 NA coding downstream 3370 42708669 ~ 42710429 (-)
XLOC_016744 myo10 coding downstream 8515 42605252 ~ 42705284 (-)
XLOC_016746 NA coding downstream 35417 42678023 ~ 42678382 (-)
XLOC_016743 NA coding downstream 116206 42595924 ~ 42597593 (-)
XLOC_016742 dip2cb coding downstream 155250 42496498 ~ 42558549 (-)
XLOC_016749 NA coding upstream 1311 42719037 ~ 42771978 (-)
XLOC_016750 adcy8 coding upstream 58498 42776224 ~ 42871286 (-)
XLOC_016751 NA coding upstream 218155 42935881 ~ 42936238 (-)
XLOC_016752 oc90 coding upstream 224826 42942552 ~ 42960353 (-)
XLOC_016753 BX511268.2 coding upstream 244502 42962228 ~ 42962344 (-)
XLOC_016727 BX663525.2 non-coding downstream 730043 41972537 ~ 41983756 (-)
XLOC_016725 BX663525.1 non-coding downstream 766903 41945975 ~ 41946896 (-)
XLOC_016754 NA non-coding upstream 245136 42962862 ~ 42978612 (-)
XLOC_016755 NA non-coding upstream 263478 42981204 ~ 42986970 (-)

Expression


Co-expression Network