XLOC_016752 (oc90)


Basic Information

Item Value
gene id XLOC_016752
gene name oc90
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42942552 ~ 42960353 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032853
ATTAGAAGACATTGTGAAGTAGAGTTTGGATGTGTGGATGTCTGACCACTGAAAATCTTGATTCATTCACACTGTGCAAGACTCATTGTATGAAAACTGGATTGTACGACTGATTCTTTTAAAGATGAGGATGCTGTATCTTATTTTCCTCTTCGTACTACAGAAAGTTCACAGCACTGCTGTTTTCTGCCCAGAAACAGATGACCTCAACTCTGACAAGCTTCTGATTGGTTGTCTGGGTGTGCGGTTGACCTGGCTGTACGCGGTGTTTGAAGACCTGCGGTCAGTGCTAGAGTTTGCGGTCAGTCTGCGGTGTGAGACTGGACTTTGTCCTGCAGACATCCAGGATCACGGGCATTACTGCAGTAACGCAAACACGCGGGACCTCCAGCAGATACAGCCCGTAGACGCGCTCGACGGGTGTTGTTTTACTCACTTGAGATGTTCACAAGAGCTAAAGGAGAGAAACTGCAGTCGCAGGGCACCATCAAACAACAACTACACCTGCAGCTACAACTCCAGCTGCGATATGTTGGATTTCTGTGATGAAGGATTCTGTCGGTGTGATCGAATGGTTATAGACTGCATCAGCTTCAACCGTCCAATCACAAAACAGGACAGAGATAACCAGCTTATCACATCACAGACAGTTTCTCCCTTTGTGACGGATCTACTTGAAAATGACACCTACATTAGTGATGTGGTCAATGTAACAGAAAGTGTGGATCTTCCCCTGTCAGACATCGACATGGAGACCATGTTCTACGAAGTAAATGGCACGCTGAATGAGACTATGAGCAACTTCACTAATGAGCTGGTGCCGGTCAACGACTCTCTGAGCAGCAATTTCCAGAGCACAGAGTATCCAGGGATATATCAGTCAGGTCGAGAGGAGGAGGAGAATGAAGCCGGGGAGAAAGAGCTGGGCAGAAACCCAGACAGAGAAAGCACACTTGAAAGAGAGGAAGAGCCAGTGGAATATGAGGATGGGCTCTCCAATGTTACTGCTGTGTTGACAACCGAAGAGCCTGCTGGAGACAATGTGGAAGCCCCTACTACCAACAATCCAGTGCAATGGAACAAACTGGACTGGACAAACAATGAGCCGACTGTTAGCATGGCGCTAACAGAATCACAGAATGTCACAGACTTACCAGATAAGAACACACCCCACATGACCCCGCCAACAACATATGTACAAACTCACTCACAACCTGACCATCATCCATTTGACGAAGATGATTATGAGAGTGAAGAAGATAAACTTCAGTTATTCACAAGCAACACTTTAAAACCTACTACACACACTTTTGAACATACTACACTCACACAAACGCACACTACAACTAATTACACACATGGCATCACTAAACCACATGTCGACACACATGTTATAACAGAAGAAGAGAGTGAAGAATCAGGAGAGGAAGGAGAAAAGGAAGTACAATCTACACAGAGCCCTTATATGGTTTTGATGACCACACCCACTAAATTAACAACCAATCAAAGCTCGCATCACAAAACAACCTCGTCAGTGGTGACCAGTAAAAATACAGCAGCTTCTGTGCAGTTTCCCTCTATGAAAGAAAGTGAGGAGAAATACATATCAGATGAAAGTAAGCCAGAGAGCAAGGAAGATGAAGAGACAGAAAAAGAGAGGGATTTATTAGCAGACCCGCCAAACAAGAGTCTAGAAAGCAGCACAGAACAAAACTACAAATTAAGCACAACAAAACCAACAACTCCAACTCAAAAAATGGACAAGGAAGAGAGTAAGGAAGATTTACAAAGTCATGAAGAGGATGATAAATCAACCACAAGCCAAACCACCACCATCCCATATAGGGTGAGCCAGATTAGTCCGTTCAGTTGGGTCATTCCAGCACCGATCCCTAAACCTGTGGTTCATAGTGTATCACCAGCACCAACAGTGGTAAAACCAACTACGAACCACAAGAGCACAACTGTGGTTCCTCAAAAGCCCATCAGCACACGGACCACAACATCAGGACGAGCTACTGTTGAAACCATCAGTCATCCTCAGAAACCTCCCCATCCAATCACTGATCGGTCACCCTCATTGACCACTACGGAACGGCAGGAGTCtgctgaggaagaggaggaggaggaggaggaagaaaaaGAGCCCTCTGACAGCTCTCAGGAATCTAAGAAAATTGagtCTCTTCGGGTCCGGGGACGAGCGCTGCCGTTTTTTACTTTGTCTCTGTTGGAAGCAGCTGGACTCACAGATTTGCAGCAGCAAAAAGACTCTGAGGagtgTAGCATGTCTTTCCTCCAGTACAGCGCATCTGGACGGGTGTGGAGGGATATGTCTGCTCTAGGAGAAATGTTACACTGTCTGACCGGACGATGCCCTCATGAGTATCAACACTACGGTTGCTACTGTGGTCAGCAGGGGACAGGACAACCAGTGGACCGACTGGACCGGTGTTGTTTTCTGCAGCAGTGCTGTCTGGAGCAGCTCAGTGTGTTTGGCTGCAGGACAAACAGAAAACTCAACGCTCACATCAGCTGCCACAAAGCAAAACCTCAatGTTtcggagtgagtgtgtgtgaccGGCTGCAGTGTGTTTGTGATCGCTCCACTGCTGAATGCATGGCGGCGTCACACTTTAACAGCTCCGCCAGCTCCTCATGCTCCGGGCCCCGCCCACTGTGTCTCCGCACGGCTCATTCGTCAGCACAGTCGACCAATCAGGAGTCCAGCGAGGAGAGCGATGAAATAAGCCAATCACAGCCTCAGATCaacacacaatcagacacagTTGACAGAAAACCCACACAAAGCAAACCACAACAGGACGTCAGAGAAGAAGAGGAAGACGAAGAAGGAAAGGagaaagaggaagaagaagaggaggaaaaggaacaagaggaagaagaggaggaaaaggaacaagaggaagaagaggagcaGTAGAAGGAGgtgtttttgtcattttgctATTTTCAGGCAGCTCTTGATGATGTTATACACATTTAATGAAAAGTTTAGTATTCAGTGAAGATCTGCTGGTTTTTGACCTACTGAAAGACCTTTTATATTCGGCtgtttaattaaagaataaaGGCATTTATTGTTCAGATAAAATGATAGAATGTTGATAAAATATGTTGATTTCTGTAAAGAGAAATGTTGAATATATATTAGTAAATTGAACTTTTatgcttttacatttttatattaatatttcggTTTTATTATCAGTAAATTTAGTACCTCAAA
>TCONS_00032854
CAAATAtcttttacctttttatttagtGTACAAAATGCTAAATTTATGAATGACCACAAAACCAGACAAAAGTGTAATTTTTCTGTAACTGAGTAAATGTATACATCACATGAAAGGTGTTGTTTTACTCACTTGAGATGTTCACAAGAGCTAAAGGAGAGAAACTGCAGTCGCAGGGCACCATCAAACAACAACTACACCTGCAGCTACAACTCCAGCTGCGATATGTTGGATTTCTGTGATGAAGGATTCTGTCGGTGTGATCGAATGGTTATAGACTGCATCAGCTTCAACCGTCCAATCACAAAACAGGACAGAGATAACCAGCTTATCACATCACAGACAGTTTCTCCCTTTGTGACGGATCTACTTGAAAATGACACCTACATTAGTGATGTGGTCAATGTAACAGAAAGTGTGGATCTTCCCCTGTCAGACATCGACATGGAGACCATGTTCTACGAAGTAAATGGCACGCTGAATGAGACTATGAGCAACTTCACTAATGAGCTGGTGCCGGTCAACGACTCTCTGAGCAGCAATTTCCAGAGCACAGAGTATCCAGGGATATATC
>TCONS_00032855
TTAAATGTTTTATACAACTGATGTATAAAACCCCATTTCCCACTGACCGTGACCGTTAAAATACGTGTATATTTATGTCGTACAGGTTGTCTGGGTGTGCGGTTGACCTGGCTGTACGCGGTGTTTGAAGACCTGCGGTCAGTGCTAGAGTTTGCGGTCAGTCTGCGGTGTGAGACTGGACTTTGTCCTGCAGACATCCAGGATCACGGGCATTACTGCAGTAACGCAAACACGCGGGACCTCCAGCAGATACAGCCCGTAGACGCGCTCGACGGGTGTTGTTTTACTCACTTGAGATGTTCACAAGAGCTAAAGGAGAGAAACTGCAGTCGCAGGGCACCATCAAACAACAACTACACCTGCAGCTACAACTCCAGCTGCGATATGTTGGATTTCTGTGATGAAGGATTCTGTCGGTGTGATCGAATGGTTATAGACTGCATCAGCTTCAACCGTCCAATCACAAAACAGGACAGAGATAACCAGCTTATCACATCACAGACAGTTTCTCCCTTTGTGACGGATCTACTTGAAAATGACACCTACATTAGTGATGTGGTCAATGTAACAGAAAGTGTGGATCTTCCCCTGTCAGACATCGACATGGAGACCATGTTCTACGAAGTAAAT

Function

symbol description
oc90 Predicted to enable calcium ion binding activity and phospholipase A2 activity. Acts upstream of or within otolith development. Predicted to be located in extracellular region. Is expressed in midbrain hindbrain boundary neural rod; nervous system; otic vesicle; pharyngeal arch 3-7 skeleton; and spinal cord neural rod. Orthologous to human OC90 (otoconin 90).

GO:

id name namespace
GO:0006644 phospholipid metabolic process biological_process
GO:0048840 otolith development biological_process
GO:0050482 arachidonic acid secretion biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004623 phospholipase A2 activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-300 Predicted to enable calcium ion binding activity and phospholipase A2 activity. Acts upstream of or within otolith development. Predicted to be located in extracellular region. Is expressed in midbrain hindbrain boundary neural rod; nervous system; otic vesicle; pharyngeal arch 3-7 skeleton; and spinal cord neural rod. Orthologous to human OC90 (otoconin 90).

Ensembl:

ensembl_id ENSDARG00000001721

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032853 False 3250 mRNA 0.45 15 42942552 42960353
TCONS_00032854 False 574 mRNA 0.41 6 42953266 42958113
TCONS_00032855 True 630 mRNA 0.47 6 42953369 42958619

Neighbor

gene id symbol gene type direction distance location
XLOC_016751 NA coding downstream 6314 42935881 ~ 42936238 (-)
XLOC_016750 adcy8 coding downstream 71266 42776224 ~ 42871286 (-)
XLOC_016749 NA coding downstream 170574 42719037 ~ 42771978 (-)
XLOC_016748 NA coding downstream 224826 42713799 ~ 42717726 (-)
XLOC_016747 NA coding downstream 232123 42708669 ~ 42710429 (-)
XLOC_016753 BX511268.2 coding upstream 1875 42962228 ~ 42962344 (-)
XLOC_016754 NA coding upstream 2509 42962862 ~ 42978612 (-)
XLOC_016755 NA coding upstream 20851 42981204 ~ 42986970 (-)
XLOC_016756 kcnq3 coding upstream 41159 43001512 ~ 43010396 (-)
XLOC_016757 kcnq3 coding upstream 54026 43014379 ~ 43083755 (-)
XLOC_016745 NA non-coding downstream 193890 42665902 ~ 42748662 (-)
XLOC_016763 NA non-coding upstream 417749 43378102 ~ 43379093 (-)
XLOC_016764 CABZ01058723.1 non-coding upstream 549149 43509502 ~ 43517018 (-)

Expression


Co-expression Network