XLOC_016760 (ftr14)


Basic Information

Item Value
gene id XLOC_016760
gene name ftr14
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 43131147 ~ 43135700 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032865
ATATGACTGGCTGATTCGTTTTTCACAAACAGGAAGTGATTCCTCTAAGAAAAATCGAAACTTAAGCTGTTGTCGAAATGTTGAGTATTCTCTTCTGTCTGTGAGTTTGTGCTGTAAAATGGCAGAATCCAGTATTTCAGTGGCTCAGGATCAGTTCAGCTGTTCAATCTGTCTGGATCTACTGAAGGGTCCAGTAACTATTCCCTGTGGACACAGTTACTGTATGAGCTGTATTTTAGACTGCTGGGATCAGGATGAGCAGAAGGGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCACTCCAAGACCTGCTTTAGGGAAAAACACCATGCTGGCTGAAGTGGTGGAGAAACTCAAGAAGACCAAACTACAAGCTGCTCGTCCTGCTCAGTGTTACTCTGAATCTGCAGATGTGGAATGTGATGTTTGTACTGGAGACAAAAACAAAGCTATCAAATCCTGTCTGGTGTGTCTGAACTCTTACTGCCAAAATCATCTTGAACAACACGAGAGTTTCTTCAGAGGTAAAAAACACAATCTGATGGACGCCACTGGACGACTGCAGGAGATGATCTGCTCTCAACATGACAAACTACTGGAGATTTTCTGTCGTACTGATCAGTGCTGTATTTGTTATCTGTGTACAATGGATAAACACAAAAGCCACGACACTGTATCAGCTGCAGCAGAAAGGACTGACAAACAGAGGCAGTTGGAGGAAACCCAGAGTAAACTCCATCAGAGAATCCAGAGGAAACTGAAGGAGTGTGAGGAGCTGAGAGCAGCTGTAGAGTCTCACAAGCGCTCTGCACAGGCAGTAGTGGAGGACACTGAGAGGATCTTTACTGAGCTCATCTGCTCCATTGAGAAGAGCCGCTCTGAGGTGATGCAGTTGATCAGAGATCAGGAAAAGGCTGCAGTGAGTGGGGCTGAAGGACGACTGGAGCGACTGAAGCAGGAGATTGATGATCTGAGGAGGAGAGACGCTGAGCTGGAGCAGCTTTCACACACAGACCATCACATCCATTTCCTACAGAGTTTCCAGTCTCTCTCTACTCCTCCTGGATCCACAGACTCATCCAGCATCACTGTCAGCTCTCCTCTCTCTTTTGATGATGTTGGTAAATCTGTGTCTCGTCTGAGAGAGAAACTGGAGCATTTCTGCAGAGAGGAGATAAAAAAGATATCTGGTAAAGTGAGAGAGATAACCAGGATATCCAAACCTGAACCAAAGACCCGTGAGGACTTCCTCCAGTATTACGGTCCGCTTACTTtggatccaaacacagtgaataatTACCTGTTGCTGTCTGAAGGGAACAGAGTGTTTGAATACACTTCTAAAGACAATcagtatcctgatcatccagacaggtTTGATTGTTGGCTTCAGGTGTTGtgtagagagagtgtgtgtggacgctgttactgggaggtgGAGTGGAGCGGCAGAGGAGTGTCCATATCAGTGGCGTATAAGAGCATCAACAGGAAAGGAGAGGGAACTGAGTGTGTAATTGGACGTAAtgatcagtcctggagtttgtccTGCTCTGACTCCAGTTGTTCATTTTGGCACAATAACAAACACACCAAACTGCCAGTAATGTCCATCTCATCTAGAATAGGAGTgtatgtggatcacagtgcaggaactctttCCTTCTACAGCATCTCTGACACAATGAACCTCATTCACAGCATTCACACCACATTCACTCAGCCACTCTACCCTGGGTTTAGGATCAATTCtttatattttctattatcaaaaagcaagccaaaaataaaactaaGTGATGTGAAGATGTAGATGGTGATAAATCAGTAACTgtgaaacatttttgttttattatcaataaatcaaGACTAAATTCTCCACCAAATTAAGAAACAGAAATGCCAGCAAAGATATGAAATGTCAAATGATGAACGTTGTGCTTTTGTCACTTTGAACAGAATCATATCCTGCTGACTCTCACTGCATGTTTCTAGATTTCACACAGGCATGTTCTTGTTTATATGTGCtctgataaaaaaattaaactttaatcTTAAAAGAATAGCAGAAATATATAATTATTCTCTCAGTGCTTTTATATCACAGCCATTGTGATCTTgcatttatattattgtattaatttttgATCTATTGGAACAGATTTATTTGTACTGAAAATTTGCTATTATTGCATCAGTTTTGAAAGACAcatatattgtcatttattaaggCAAAAAAAATAGATCATTAGTTTATATTATTGACCAATATAAAATGCCAGAAGAATCCTTAGTAGTACTGCAAGATAAATGTATTTCTGTAGAATTTGTATTTTACTTTATCAGCCTCAGTAAGAATATAGTCCTctgtattttgtgtattttcacATTGTGAGTTTGTTTCTCTCCTGATGAATTCTGTTTTACCACAGACAAAAGTGTAACCCCGAGTTCAGCTTCTAAATAAACATCACTGTCAAAACACGA

Function

symbol description
ftr14 Predicted to enable zinc ion binding activity. Predicted to be involved in protein ubiquitination. Orthologous to human RNF135 (ring finger protein 135).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060512-201 Predicted to enable zinc ion binding activity. Predicted to be involved in protein ubiquitination. Orthologous to human RNF135 (ring finger protein 135).

Ensembl:

ensembl_id ENSDARG00000053293

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032865 True 2490 mRNA 0.41 6 43131147 43135700

Neighbor

gene id symbol gene type direction distance location
XLOC_016759 ftr13 coding downstream 217 43128362 ~ 43130930 (-)
XLOC_016758 lrrc6 coding downstream 6400 43098237 ~ 43124747 (-)
XLOC_016757 kcnq3 coding downstream 47392 43014379 ~ 43083755 (-)
XLOC_016756 kcnq3 coding downstream 120751 43001512 ~ 43010396 (-)
XLOC_016755 NA coding downstream 144177 42981204 ~ 42986970 (-)
XLOC_016761 ftr12 coding upstream 9238 43144938 ~ 43151358 (-)
XLOC_016762 crema coding upstream 23471 43159171 ~ 43196595 (-)
XLOC_016763 NA coding upstream 242402 43378102 ~ 43379093 (-)
XLOC_016764 CABZ01058723.1 coding upstream 373802 43509502 ~ 43517018 (-)
XLOC_016765 CABZ01058721.1 coding upstream 402146 43537846 ~ 43545342 (-)
XLOC_016754 NA non-coding downstream 152535 42962862 ~ 42978612 (-)
XLOC_016753 BX511268.2 non-coding downstream 168803 42962228 ~ 42962344 (-)
XLOC_016751 NA non-coding downstream 194909 42935881 ~ 42936238 (-)
XLOC_016749 NA non-coding downstream 359169 42719037 ~ 42771978 (-)
XLOC_016766 NA non-coding upstream 431445 43567145 ~ 43571760 (-)
XLOC_016770 NA non-coding upstream 494053 43629753 ~ 43630083 (-)
XLOC_016786 BX323035.1 non-coding upstream 1387156 44522856 ~ 44524381 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G358256 NA non-coding CI01000152 null 550220 ~ 557817 (+)