XLOC_016764 (CABZ01058723.1)


Basic Information

Item Value
gene id XLOC_016764
gene name CABZ01058723.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 43509502 ~ 43517018 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032871
GCTTTTCATtggatgcacttgagctcaaccactctcactggcagagctgtgataaacacaaaacacaattggCTGTTTTtgtaaaggggaggagctattttATGTCCCGCTTTCAAATTATTTCTTAGTTGAGATTACTtcaagcattaaaataaaaaatacacatttcaaagcacttcatgggaccatTAACATATTGAATCAATAcactctatggcacctttaaaattCCATCTTTTTAAACAGTATTTTCTGCAAGCCTACTCTACTTTCCCATGCTGAGATCAATCAGATAGCACAGTTTGTTGTTTTCTGATTGTTGTGATTAAagtcaaaagtaaaaataattgaaaactgTGAAACAGCTACTCATCATTAGATTTAGATCagttcatttgatttgatttatgagaattatattgtgttttttttagcaTTCATGGTGTGAACAGGCCCTAAGAACAAgaaatgtatgtttgtgttttatttattttcagcagaTATACATAACTATCTAACAATACTTTTCTCACACATCAAGGTGTTTATAGGTAATCAAAACCATGACACGCCAGAAGTGCGTACATTTGATCCAGTGCTGATGCGTTTCCTGCGTATCTACCCTGAGCGTGGCTCTCCCGATGGCATGGGATTACGACTGGAGGTTTTAGGGTGTGACCTGCAAGAGCCCACAACACCTCTTCCTCTTGCCACTACTATGGAGACTACAGCAGCTACAGTCACTAGCGCTAGTATGCTACTAGGAAACATCCCAACAACTACCACTTTTCCAACAACGGCAGAGAATTGCGATGATGATGATGGAAACTGCCATAGTGATGCATTGACAGACTACGACACAACAGAAACTGCAGTGTCAGAGCCATTTCTGGAGATGGAAGAAGCACCTGGTGagtaactaaacaaaaacaaatagtgAAAAAAAAGAGTCCTCCCTTAAAATTAGGTGTACATTTGGACCTCAAACGTTCCCAGATtctcaaaacacttttaatggGTTACTTTCTATTGTGCcataatttgaaaataaattgttatatgttGTTTAAGCTTCATTATGATGATCACTAATGTCTTTTCTTAGTCTTCTTATGTACTTGCATAGCATACAGATTCCTCATTAGCCTGAATAATATGTAGATCTTTGGCGTTTACCATAGTGATGGTCCATGAATGTCTCTACTGCCCCCACGTGTTGCATAGCGTAAGTGCATGCTGTAAACTTTATTTGCTgaactttttaaatacttttaaaaagattttaaaacacACTGCAGTGCATTAGATGAC

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:1902284 neuron projection extension involved in neuron projection guidance biological_process
GO:0051129 negative regulation of cellular component organization biological_process
GO:0048468 cell development biological_process
GO:0060612 adipose tissue development biological_process
GO:0022604 regulation of cell morphogenesis biological_process
GO:0072359 circulatory system development biological_process
GO:0007507 heart development biological_process
GO:0007517 muscle organ development biological_process
GO:0006935 chemotaxis biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0050919 negative chemotaxis biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0030182 neuron differentiation biological_process
GO:1990138 neuron projection extension biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0090066 regulation of anatomical structure size biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0120035 regulation of plasma membrane bounded cell projection organization biological_process
GO:0120036 plasma membrane bounded cell projection organization biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0010977 negative regulation of neuron projection development biological_process
GO:0048846 axon extension involved in axon guidance biological_process
GO:0031344 regulation of cell projection organization biological_process
GO:0031345 negative regulation of cell projection organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0030517 negative regulation of axon extension biological_process
GO:0048856 anatomical structure development biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0048588 developmental cell growth biological_process
GO:0048589 developmental growth biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0001568 blood vessel development biological_process
GO:0010769 regulation of cell morphogenesis involved in differentiation biological_process
GO:0010771 negative regulation of cell morphogenesis involved in differentiation biological_process
GO:0040007 growth biological_process
GO:0048640 negative regulation of developmental growth biological_process
GO:0040011 locomotion biological_process
GO:0050771 negative regulation of axonogenesis biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0097485 neuron projection guidance biological_process
GO:0071711 basement membrane organization biological_process
GO:0061564 axon development biological_process
GO:0030030 cell projection organization biological_process
GO:0048666 neuron development biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0061061 muscle structure development biological_process
GO:0030308 negative regulation of cell growth biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0048675 axon extension biological_process
GO:0060537 muscle tissue development biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0042330 taxis biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0060560 developmental growth involved in morphogenesis biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0032535 regulation of cellular component size biological_process
GO:0001944 vasculature development biological_process
GO:0031175 neuron projection development biological_process
GO:0016049 cell growth biological_process
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005588 collagen type V trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0051015 actin filament binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117748

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032871 True 1311 lncRNA 0.37 3 43509502 43517018

Neighbor

gene id symbol gene type direction distance location
XLOC_016763 NA coding downstream 130409 43378102 ~ 43379093 (-)
XLOC_016762 crema coding downstream 312907 43159171 ~ 43196595 (-)
XLOC_016761 ftr12 coding downstream 358144 43144938 ~ 43151358 (-)
XLOC_016760 ftr14 coding downstream 373802 43131147 ~ 43135700 (-)
XLOC_016759 ftr13 coding downstream 378572 43128362 ~ 43130930 (-)
XLOC_016765 CABZ01058721.1 coding upstream 20828 43537846 ~ 43545342 (-)
XLOC_016766 NA coding upstream 50127 43567145 ~ 43571760 (-)
XLOC_016767 itgb1b coding upstream 60276 43577294 ~ 43583896 (-)
XLOC_016768 epc1b coding upstream 68553 43585571 ~ 43605556 (-)
XLOC_016769 itgb1b.1 coding upstream 102537 43619555 ~ 43635777 (-)
XLOC_016755 NA non-coding downstream 522532 42981204 ~ 42986970 (-)
XLOC_016754 NA non-coding downstream 530890 42962862 ~ 42978612 (-)
XLOC_016753 BX511268.2 non-coding downstream 547158 42962228 ~ 42962344 (-)
XLOC_016751 NA non-coding downstream 573264 42935881 ~ 42936238 (-)
XLOC_016770 NA non-coding upstream 112735 43629753 ~ 43630083 (-)
XLOC_016786 BX323035.1 non-coding upstream 1005838 44522856 ~ 44524381 (-)
XLOC_016787 NA non-coding upstream 1044996 44562014 ~ 44563193 (-)
XLOC_016791 CR788281.2 non-coding upstream 1246064 44763082 ~ 44763375 (-)

Expression


Co-expression Network