XLOC_016771 (itgb1b.2)


Basic Information

Item Value
gene id XLOC_016771
gene name itgb1b.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 43638983 ~ 43653328 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032876
ACTCAGACTGTATGAACAAAGTAAACTACACTCAAACTTTACTTCAATATTTCAGAAACGTCCTGTAAATTTATACTGTgaacatttatttacaacacaactTCAGGAGGAGCCTTAGCAGTAGCTACATATCAAGATGGATATAACAGTTTTGTTATTATCAGCTCTGCTAGGATTTGTTTCTTATGTCGGTGCTAACACAGACAGTAATCCATGCATTTCTGCAAATGCCAAAACCTGTGGAGAGTGTATTCAGATCGGCCCACAGTGTGTGTGGTGCAAAGATCCTGATTTCAAACCTTCACGCTGTGATGACATTGAGTCCATGGCGAAAGCTGGCTGCACTGCAGACGGTGTAGAAAACCCTCGAGGAGCGGTCACTATTGACAAGAACAAACCCGTCACAAACCGTAAAACTGATGGAGGACAGAATCTGAGGCCCGATGAAATCACGCAGATTCAGCCACAGAAAGTCAAGCTGAACCTTCGCTCAGGAGAAGCACAGAAGTTTACTCTCAAGTTTAAGAGGGCAGAGGATTATCCCATTGATCTGTACTTCCTGATGGACCTCAGTCACTCTATGCTGAGCAATTTGGAAAATTTCAAAAACCTGGGAACCGAACTCGCCAATGAGATGAAGGACATCACGAAAGACCTGCGTATAGGTTTTGGTTCATTCTTTAGGAAACCTTCCATTCAGACGAACCCATGTTTTCCAGATAATTGCATAGCTCCATTCAGTTACTTTAATGTACTGAGCTTGACGGACGATCATGCATTGTTTACACAAGAAATCAGCAAGCTGAAAACCTCTGGAAACCTGGATTCTTCAGAGGCAGGATTAGAGGCATTGATGCAGGCTGCTGTCTGCACGGACGTGATTGGCTGGAGGAATGTCACTCGTCTCCTTGTGTTTTTCACGGATGCTGGACTGCGTTTTTCTGGTGATGGAAAACGAGGTGGCATTGTTCGTCTAAATGATGGGAAATGCCTTCTTGACGATAATATGTACACCAGAAGTGACTACTCTGACTACCCCAGCCTCTCTCAGCTGGTAGACACAGTTACTGACAATAGCATTCACACTATCTTTGCTGTGACAGAGCAGTATCGGGATCTTTATCAGGAGCTGTCTGCTAAAGTGCCTAACTCAGCAGTGGGGACACTCTCCACCAGTGGGGACAATCTGGCTAAGCTCGTCATTGATGCATTAATTCCTCTGTCCTCTGAGGTGATTGTGGAGAACAGCAAGCTACCTGATGGTGTGTCCATCTCTTACGTCTCCCACTGCAAGAACGGAGTGAATGGAAGAGGAGAAGATGGGAGAAAGTGCTCCAACATCTCCATTGGGGATGAGGTGTTGTTTGATATAGAAATCACGGCTAAAGGCTGTCCGTCTAAAGGTAAACCAGAGACCATAAAGATCAAGCCACTGGGGTTCAGCGAGGAGGTGGAGATCTTTCTCAACTACATCTGTGAATGTGAGTGTCACAAAGACGGGATCAAAAACAGCCCCGAGTGTAGCGGAGGACAGGGAACGCTGGAGTGTGGAGTCTGCAGGTGTAATGAAGGTCGATCTGGCAGAATTTGTGAGTGCACCCAGGATCTGGATGCATACTGCCAGATGGATATGTCGTCAGGCATCTGCAGCAACAATGGCGAATGTGTCTGTGGAACCTGTGAGTGTAAGAAAAGAGAAAACCCGGAGGAGAGATACAGCGGAAGGTACTGCGAGTGCAACAACTTCAGCTGCgaccgcttcaacaacaagctCTGTGGAGGTCACGGTCGATGTATGTGCGGGCAGTGTGCATGTGAATTTAACTACGCCGGCAGTGCATGCCAATGCTCTATGGATACCTCGAGCTGTCTGGCCAGTAACAAACTGATCTGTAATGGACACGGCATCTGTGAATGTGGACAGTGTAAATGTTTGGACAATTGTCAAGGTCCAACCTGTGAAATCTGCCTAACCTGAAACAGTGGTGTGAAAAGGAAAAAACTGACACCTGAAAGCATATCCCTCAATTTATACTGTACATCATATTGAGACACatgttatacattttaattattgagTGTCATCATAGGTCAGTAAGATGATGTTGGTTGATGCAATATGTTTGCATGTTATTATAACCTACGAAACAGGTTATGATCTTACAGTATATACAagatttatacaatttatatttttagaaatgCTGTGATGCAAAAATACTACACAGAGTGAATTGTCTTAATGCCTGGGATTAAATATGGGTGTTTCAATTGGTTTCAGTGGTACAATTTGTCAAGAAGACCCTGAGTGATCATTTCTTATAGTGGAATATGCGgtgtatattaaatattacaataatgtATCACTAAACATTCAAAACCG
>TCONS_00032877
ATGGATATAACAGTTTTGTTATTATCAGCTCTGCTAGGATTTGTTTCTTATGTCGGTGCTAACACAGACAGTAATCCATGCATTTCTGCAAATGCCAAAACCTGTGGAGAGTGTATTCAGATCGGCCCACAGTGTGTGTGGTGCAAAGATCCTGATTTCAAACCTTCACGCTGTGATGACATTGAGTCCATGGCGAAAGCTGGCTGCACTGCAGACGGTGTAGAAAACCCTCGAGGAGCGGTCACTATTGACAAGAACAAACCCGTCACAAACCGTAAAACTGATGGAGGACAGAATCTGAGGCCCGATGAAATCACGCAGATTCAGCCACAGAAAGTCAAGCTGAACCTTCGCTCAGGAGAAGCACAGAAGTTTACTCTCAAGTTTAAGAGGGCAGAGGATTATCCCATTGATCTGTACTTCCTGATGGACCTCAGTCACTCTATGCTGAGCAATTTGGAAAATTTCAAAAACCTGGGAACCGAACTCGCCAATGAGATGAAGGACATCACGAAAGACCTGCGTATAGGTTTTGGTTCATTCTTTAGGAAACCTTCCATTCAGACGAACCCATGTTTTCCAGATAATTGCATAGCTCCATTCAGTTACTTTAATGTACTGAGCTTGACGGACGATCATGCATTGTTTACACAAGAAATCAGCAAGCTGAAAACCTCTGGAAACCTGGATTCTTCAGAGGCAGGATTAGAGGCATTGATGCAGGCTGCTGTCTGCACGGACGTGATTGGCTGGAGGAATGTCACTCGTCTCCTTGTGTTTTTCACGGATGCTGGACTGCGTTTTTCTGGTGATGGAAAACGAGGTGGCATTGTTCGTCTAAATGATGGGAAATGCCTTCTTGACGATAATATGTACACCAGAAGTGACTACTCTGACTACCCCAGCCTCTCTCAGCTGGTAGACACAGTTACTGACAATAGCATTCACACTATCTTTGCTGTGACAGAGCAGTATCGGGATCTTTATCAGGAGCTGTCTGCTAAAGTGCCTAACTCAGCAGTGGGGACACTCTCCACCAGTGGGGACAATCTGGCTAAGCTCGTCATTGATGCATTAATTCCTCTGTCCTCTGAGGTGATTGTGGAGAACAGCAAGCTACCTGATGGTGTGTCCATCTCTTACGTCTCCCACTGCAAGAACGGAGTGAATGGAAGAGGAGAAGATGGGAGAAAGTGCTCCAACATCTCCATTGGGGATGAGGTGTTGTTTGATATAGAAATCACGGCTAAAGGCTGTCCGTCTAAAGGTAAACCAGAGACCATAAAGATCAAGCCACTGGGGTTCAGCGAGGAGGTGGAGATCTTTCTCAACTACATCTGTGAATGTGAGTGTCACAAAGACGGGATCAAAAACAGCCCCGAGTGTAGCGGAGGACAGGGAACGCTGGAGTGTGGAGTCTGCAGGTGTAATGAAGGTCGATCTGGCAGAATTTGTGAGTGCACCCAGGATCTGGATGCATACTGCCAGATGGATATGTCGTCAGGCATCTGCAGCAACAATGGCGAATGTGTCTGTGGAACCTGTGAGTGTAAGAAAAGAGAAAACCCGGAGGAGAGATACAGCGGAAGGTACTGCGAGTGCAACAACTTCAGCTGCgaccgcttcaacaacaagctCTGTGGAGGTCACGGTCGATGTATGTGCGGGCAGTGTGCATGTGAATTTAACTACGCCGGCAGTGCATGCCAATGCTCTATGGATACCTCGAGCTGTCTGGCCAGTAACAAACTGATCTGTAATGGACACGGCATCTGTGAATGTGGACAGTGTAAATGTTTGGACAATTGTCAAGGTCCAACCTGTGAAATCTGCCTAACCTGAAACAGTGGTGTGAAAAGGAAAAAACTGACACCTGAAAGCATATCCCTCAATTTATACTGTACATCATATTGAGACACatgttatacattttaattattgagTGTCATCATAGGTCAGTAAGATGATGTTGGTTGATGCAATATGTTTGCATGTTATTATAACCTACGAAACAGGTTATGATCTTACAGTATATACAagatttatacaatttatatttttagaaatgCTGTGATGCAAAAATACTACACAGAGTGAATTGTCTTAATGCCTGGGATTAAATATGGGTGTTTC

Function

symbol description
itgb1b.2 Predicted to enable collagen binding activity involved in cell-matrix adhesion; fibronectin binding activity; and integrin binding activity. Predicted to contribute to C-X3-C chemokine binding activity and laminin binding activity. Predicted to be involved in several processes, including cell adhesion mediated by integrin; cell-matrix adhesion; and integrin-mediated signaling pathway. Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Predicted to be active in cell surface and focal adhesion. Is expressed in several structures, including heart; integument; liver; periderm; and pleuroperitoneal region. Orthologous to human ITGB1 (integrin subunit beta 1).

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0016477 cell migration biological_process
GO:0007155 cell adhesion biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0033627 cell adhesion mediated by integrin biological_process
GO:0005925 focal adhesion cellular_component
GO:0008305 integrin complex cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0098639 collagen binding involved in cell-matrix adhesion molecular_function
GO:0005178 integrin binding molecular_function
GO:0019960 C-X3-C chemokine binding molecular_function
GO:0043236 laminin binding molecular_function
GO:0001968 fibronectin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2598 Predicted to enable collagen binding activity involved in cell-matrix adhesion; fibronectin binding activity; and integrin binding activity. Predicted to contribute to C-X3-C chemokine binding activity and laminin binding activity. Predicted to be involved in several processes, including cell adhesion mediated by integrin; cell-matrix adhesion; and integrin-mediated signaling pathway. Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Predicted to be active in cell surface and focal adhesion. Is expressed in several structures, including heart; integument; liver; periderm; and pleuroperitoneal region. Orthologous to human ITGB1 (integrin subunit beta 1).

Ensembl:

ensembl_id ENSDARG00000022689

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032876 False 2383 mRNA 0.44 13 43638983 43653328
TCONS_00032877 True 2133 mRNA 0.45 12 43639097 43653015

Neighbor

gene id symbol gene type direction distance location
XLOC_016769 itgb1b.1 coding downstream 3206 43619555 ~ 43635777 (-)
XLOC_016770 NA coding downstream 8900 43629753 ~ 43630083 (-)
XLOC_016768 epc1b coding downstream 33427 43585571 ~ 43605556 (-)
XLOC_016767 itgb1b coding downstream 55087 43577294 ~ 43583896 (-)
XLOC_016766 NA coding downstream 67223 43567145 ~ 43571760 (-)
XLOC_016772 FO704635.1 coding upstream 24711 43678039 ~ 43698531 (-)
XLOC_016773 kif5ba coding upstream 52265 43705593 ~ 43739740 (-)
XLOC_016774 ftr16 coding upstream 89246 43742574 ~ 43745175 (-)
XLOC_016775 zeb1a coding upstream 153902 43807230 ~ 43852207 (-)
XLOC_016776 si:ch211-195h23.4 coding upstream 287597 43940925 ~ 43942595 (-)
XLOC_016764 CABZ01058723.1 non-coding downstream 121965 43509502 ~ 43517018 (-)
XLOC_016763 NA non-coding downstream 259890 43378102 ~ 43379093 (-)
XLOC_016755 NA non-coding downstream 652013 42981204 ~ 42986970 (-)
XLOC_016786 BX323035.1 non-coding upstream 869528 44522856 ~ 44524381 (-)
XLOC_016787 NA non-coding upstream 908686 44562014 ~ 44563193 (-)
XLOC_016791 CR788281.2 non-coding upstream 1109754 44763082 ~ 44763375 (-)
XLOC_016792 CR788281.1 non-coding upstream 1120947 44774275 ~ 44774595 (-)
XLOC_016796 NA non-coding upstream 1391154 45044482 ~ 45045520 (-)

Expression


Co-expression Network