XLOC_016774 (ftr16)


Basic Information

Item Value
gene id XLOC_016774
gene name ftr16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 43742574 ~ 43745175 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032881
CTTTAGACTGTCCGTGTGTGCACCAAAATGGCAGAATCCAGCATTTCAGTGGCTCAGGATGAGTTCAGCTGTTCAGTGTGTCTAGATCTACTGAAGGATCCAGTTACTATTCCCTGTGGACACAGTTACTGTATGAGCTGTATTTCAGGCTGCTGGGATCAGGATGAGCAGAAGAGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCACTCCAAGACCTGCTTTAGGGAAAAACACTATACTGGCTGAAGTGCTGGAGAAACTCAAGAAGACAAAACTACAAGCTGCTCGTCCTGCTCAGTGTTACTCTGAATCTGCAGATGTGGAGTGTGATGTTTGTACTGGAGACAAAAACAAAGCCATCAAGTCCTGTCTGGTGTGTCTGAACTCTTACTGCCAAAATCATCTTGAACAACACGAGAGTTTCTTCAGAGGTAAAAAACACAATCTGATGGACGCCACTGGACGACTGCAGGAGATGATCTGCCCTCAACATGACAAACTACTGGAGGTTTTCTGTCGTACTGATCAGAAGTGTATTTGTCTTCTGTGTGTTGTGGATGAACACAAAAACCATGAGACTGTATCAGTTGCAGTAGAGAGGATTGACAAACAGAGACAATTGGAGCAGGCACGAAGAACACACCAGCAGAGAATCCAGAGGAATCAGAAGGAGTGTGAGGAGCTGAGAGAGGCTGTTGAGTCTCACAAGCGCTCTGCACAGGCAGCAGTGGAGGACACTGAGAGGATCTTTACTGAGCTCATCCGTTCCATTGAGAAAAGCCACTCTGTGGTGAATCAGCTGATCAGAGATCAGGAAAAGGCTGCAGTGAGTGGAGCTGAAGGACGACTGAAGCGACTGAAGCAGGAGATTGATGATCTGAGAAGGAGAGACGCTGAGCTGGAGCAGCTTTCACACACAGACCATCACATCCATTTCCTCCAGAGTTTCCAGTCTCTCTCGGCTCCTACTGGATCTACAGACTCTTCCAGCATCACTGTCAGCTCTCGCCTCTCTTTTGATGATGTTAGTAAATCTGTGTCTCGTCTGAGAGAAAAAGTAGAGCATTTCTGCAGAGAGGAGATAGAAATTATATCTGGAAAGGTAAAATACACTGAATGTGTATTCACTCCTGAACCCAAGACATGGAAGGAGCTTCTACAATATTCCCGTCGGTTTACTCTGGATGCAAATACCATGCATACATGCCTCAGTTTGTCTGAGGATAACAGAATGATTACTGAAACTGACTCAGATCAAcagtatcctgatcatccagacagattcgATAGTTTGCTTCAGGTGTTGTGTAGAGAGAGTGTgagtggacgctgttactgggaggttGAGTGGAGCGGAAGAGGAGTGGGTATATCAGtctcatataagagcatcagcagGAAGGGACGGGGTGATGAATGTGCGTTTGGATATAATGATCAGTCTTGGTGTTTGTATTGCTTTCCCTCTAGTTACTGCAAATATTCATTCTGTCACAATTACACCGAGACTGAACTGCCAGTGGTTTCCACCTCGTCTAGAATAGGAGTgtatgtggatcacagtgcaggaactctgtccTTCTACAGCGGCTctgacacaatgagcctcattcACAGAGTCCAAACCACATTCGCTCAGCCACTCTACCCTGGGTTTAGAGTTTATGGGTCAGTGGAATTATGTGATActagaaaataaattatatatatata
>TCONS_00032882
GTCTGGGTGTGGGGTTCAACAGTTTTGAGCTTTAGACTGTCCGTGTGTGCACCAAAATGGCAGAATCCAGCATTTCAGTGGCTCAGGATGAGTTCAGCTGTTCAGTGTGTCTAGATCTACTGAAGGATCCAGTTACTATTCCCTGTGGACACAGTTACTGTATGAGCTGTATTTCAGGCTGCTGGGATCAGGATGAGCAGAAGAGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCACTCCAAGACCTGCTTTAGGGAAAAACACTATACTGGCTGAAGTGCTGGAGAAACTCAAGAAGACAAAACTACAAGCTGCTCGTCCTGCTCAGTGTTACTCTGAATCTGCAGATGTGGAGTGTGATGTTTGTACTGGAGACAAAAACAAAGCCATCAAGTCCTGTCTGGTGTGTCTGAACTCTTACTGCCAAAATCATCTTGAACAACACGAGAGTTTCTTCAGAGGTAAAAAACACAATCTGATGGACGCCACTGGACGACTGCAGGAGATGATCTGCCCTCAACATGACAAACTACTGGAGGTTTTCTGTCGTACTGATCAGAAGTGTATTTGTCTTCTGTGTGTTGTGGATGAACACAAAAACCATGAGACTGTATCAGTTGCAGTAGAGAGGATTGACAAACAGAGACAATTGGAGCAGGCACGAAGAACACACCAGCAGAGAATCCAGAGGAATCAGAAGGAGTGTGAGGAGCTGAGAGAGGCTGTTGAGTCTCACAAGCGCTCTGCACAGGCAGCAGTGGAGGACACTGAGAGGATCTTTACTGAGCTCATCCGTTCCATTGAGAAAAGCCACTCTGTGGTGAATCAGCTGATCAGAGATCAGGAAAAGGCTGCAGTGAGTGGAGCTGAAGGACGACTGAAGCGACTGAAGCAGGAGATTGATGATCTGAGAAGGAGAGACGCTGAGCTGGAGCAGCTTTCACACACAGACCATCACATCCATTTCCTCCAGAGTTTCCAGTCTCTCTCGGCTCCTACTGGATCTACAGACTCTTCCAGCATCACTGTCAGCTCTCGCCTCTCTTTTGATGATTAAAATACACTGAATGTGTATTCACTCCTGAACCCAAGACATGGAAGGAGCTTCTACAAT

Function

symbol description
ftr16 Predicted to enable zinc ion binding activity. Orthologous to human RNF135 (ring finger protein 135).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-126 Predicted to enable zinc ion binding activity. Orthologous to human RNF135 (ring finger protein 135).

Ensembl:

ensembl_id ENSDARG00000032043

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032881 False 1718 mRNA 0.46 6 43742574 43745146
TCONS_00032882 True 1118 mRNA 0.47 5 43743245 43745175

Neighbor

gene id symbol gene type direction distance location
XLOC_016773 kif5ba coding downstream 2834 43705593 ~ 43739740 (-)
XLOC_016772 FO704635.1 coding downstream 44043 43678039 ~ 43698531 (-)
XLOC_016771 itgb1b.2 coding downstream 89246 43638983 ~ 43653328 (-)
XLOC_016769 itgb1b.1 coding downstream 106797 43619555 ~ 43635777 (-)
XLOC_016770 NA coding downstream 112491 43629753 ~ 43630083 (-)
XLOC_016775 zeb1a coding upstream 62055 43807230 ~ 43852207 (-)
XLOC_016776 si:ch211-195h23.4 coding upstream 195750 43940925 ~ 43942595 (-)
XLOC_016777 kirrel1b coding upstream 216451 43961626 ~ 44038776 (-)
XLOC_016778 cadm3 coding upstream 303906 44049081 ~ 44183613 (-)
XLOC_016779 sdhc coding upstream 447477 44192652 ~ 44199840 (-)
XLOC_016766 NA non-coding downstream 170814 43567145 ~ 43571760 (-)
XLOC_016764 CABZ01058723.1 non-coding downstream 225556 43509502 ~ 43517018 (-)
XLOC_016763 NA non-coding downstream 363481 43378102 ~ 43379093 (-)
XLOC_016755 NA non-coding downstream 755604 42981204 ~ 42986970 (-)
XLOC_016786 BX323035.1 non-coding upstream 777681 44522856 ~ 44524381 (-)
XLOC_016787 NA non-coding upstream 816839 44562014 ~ 44563193 (-)
XLOC_016791 CR788281.2 non-coding upstream 1017907 44763082 ~ 44763375 (-)
XLOC_016792 CR788281.1 non-coding upstream 1029100 44774275 ~ 44774595 (-)
XLOC_016796 NA non-coding upstream 1299307 45044482 ~ 45045520 (-)

Expression


Co-expression Network