XLOC_016777 (kirrel1b)


Basic Information

Item Value
gene id XLOC_016777
gene name kirrel1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 43961626 ~ 44038776 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032889
AATCAAAAACTGAGATTTGCTGAAAGAAAGAGGTTTTTCCAGCGGCGCGTCCACACTGCTGAGAGGAGAACAGAAACGAGCGCTGAATGAACGCAGACCGCGAGGACGCGCGCGACATTATCAGCACCGGTTCGCGGGGTTTCAGAGTCCGGCGTAAAGAAGATGAATTGACGGTGTGTTTTCTGAGTGACAGAGGTGGAGATGGGCTTCAGCATGACCTGCCTCTGGATTGTAACTCTGGCCATCATCAGCGTTCACAGAGTGTTCAGCGGGCCACGGTTTTCACAGGAGCCAGCGGATCAGTCTGTGGTGATCGGCGAGAGGGTGGTTCTGTCCTGCGTCGTGTTTAACTACACCGGCATCGTACAATGGACCAAAGACGGCCTCGCTCTTGGAATCGGAGAGGATCTAAGGGcATGGCCACGGTACCGTGTTTTGCGTATAATGGATGTTGGGCAGTATAATCTGGAGATCACGTCGGCGGATCTGACCGATGACTCCCTGTACGAGTGTCAGGCCACTGAAGCCGCTCTGAGGTCCAGAAGAGCTAAACTCACCGTTCTGAttCCTCCTGATGGTCCCGTAATTGAGGGATCTCCAGAGATCCTGTTGACGGCAGGAACCTCATTTAACCTCACCTGTGTGTCTCGAGGAGCAAAGCCAATGTCAACAATTGAATGGTACAAAGATGGGATCATAGTGGAAGGAGCTCATACCAGCACTGAGGTGTTATCGGACAGGAAAAGGGTGACCACAAAAAGTTTTTTGGAGATCCAGCCAATGGACACAGACACTGGACGTAACTTCACTTGCGTGGCCTCAAACCTGGCTGCTCCACTGGGGAAGAGATCAACTGTCACCCTCAACATCCACCATCCTCCTACGGTGATTTTGTCCATAGAGCCTCGCTCAGTTCTTGAAGGAGAGCGAGTTAAGTTCACCTGCCAGGCAACTGCCAACCCTCCTATAATGGGCTACAGGTGGGCTAAAGGTGGCGTGATTCTAGACGGAGCAAGAGAAAGTGTGTTTGAGACGACAGCAGATCACTCATTCTTCACCGAGCCTGTGTCCTGCCTGGTGTTTAATGCAGTGGGCAGCACTAACGTCAGTATATTAGTGGACGTTCACTTTGGCCCAATTTTGGTGGTGGAGCCAAGGCCTGTAACAGTGGACGTTGACTCAGATGTCACACTTAACTGTAAATGGTCAGGAAATCCTCCGCTTACCCTCACTTGGACCAAAAAAGGCTCCAGTATGGTCCTCAGTAACAGTAATCAGCTGTTCCTGAAGTCTGTGAGTCAAGCAGATGCAGGACAGTACGTGTGTAAAGCCATCGTCCCCAGAATTGGTGTTGGGGAGACTGAGGTCACACTCACTGTCAATgGTCCTCCAATCATCTCGAGTGAGCCGATCCAGTATGCCGTGAGAGGAGAGAAAGGGGAAATCAAGTGCTACATAGCCAGCACTCCACCGCCAGACAAAATCGTTTGGGCCTGGAAGGAGAACGTGTGGGAGAAGGAGCGAGGGACACTGCTGGAGAGATACACGGTTGAGCAGAGCAGACCTGCAACACAAGGGGGTGCCGTTCTATCCACACTCACCATCAACAATGTAATGGAGGCTGACTTCCAGTCCACGTACAACTGCACGGCATGGAACGCTTTTGGACCAGGAACCATGATCATTACCCTGGAAGAGACAGATATAGTGCCTGTAGGTGTGATAGCAGGCGGATCTGTTGgatcttccattttgcttctgcTTCTCCTCTTTGCTCTGATTTTCTATCTGTATCGACAACGCAAAAGCAGTCGTCGTGGAGTGACACTCAAGCCAGACATTAAGGTGGAAACGGTGAACAAGGAGACCAATCTGGAGGAGGAGGCCGCCAGCGCTTCAACAGCCACGCGAATGCCCTTCAAAGACGACATGGACCTGAAGCAAGACCTCCAGACCGAAACGCTGGAGCCCAAGGTGGAGGAGTATGAGGCCAAGGACCCCACGAATGGCTACTACAATGTCCGAGCCACGACTCATGATGAGGTGCGCTCTTCCACCCGCTCACTGCTCTACCAGGAATTCCGGGCACCTAATCCTGCATCAGTTTCAGCATCGACCGGCGGCCCTGCCAACATTCATCCCGCTCCTACAGGACGTTATGAGGCCCGTCCCACTTCCCGAATGGCTCACAACACCTATGCTCATTTCAACACAATCGCAAGGGCATCACAAATCCAGCCTCCAGCCAACCCCGTCTCCAAAACCACAGACTATCCTGCAGAGCGTGGCCTGCTGGAGTCCACCAATCCACTAGCTTTTGACAGCTACGCCTACTCAACCACACCTCAATACCGGTTAGGCTTTGCTCCGCCTTTGGAGGCGGGACCAGCCTATGAAATGTATCCAACGGGACAAGGGGTGGGGACGAGTCAAGATGCTAATGTAGGCAAATACCCAAGCTCCGCCCAGTTTCCATATTCAACCCCGCCCACGGAATACTCTCAAAGACACACGCAACGAATGCAGACTCATGTGTGAGGCTAAAAGAAAGCACTTCCTTGAACGCAAATATATGGTACACACTGATTTTTTTACACtatatgcaacacacacacatacacaagtttTCTACCTTTACAAAAACACGATTGAGAGAAAATTAAAGTGCCAAATTACTAACGAACCACAGCGGAAGAGGAAACCATAAACGATCACAGTGTTGAATGGAGGAACACATGTCAACCTGAAAAAAGTTCTGCCGTGGCAAATCCAGTCCTCcaaatcagtgtttcccaaccctgttcctgaaggcacaacaacagcacacattttcaacctcGTCCTAttaaaacacacctgatccaactcatccaaacattagaagagactccaaaagctgaaatgaatgggtcagataagggagacatccaaaatatgtactgttggtgtgcctttaggaacagagttgagaaacactgctctaaatatCTATTGATGTCTGTGCCAAAATGAGACACTGCAAAAGAGCCATTAACCGGTTTTCTCCATGCAAGTAAATAATATTGGCTGCTTCCTTTGAAAGAAAGGCCAGTTAAAGGCTGGAGGGCAGCAGATATGGCTGTGAAAGCCCAGTGAAAGCCTGATTGCCGTGCGCTCTGGAGTTTACGCCGGATCTACCCATCGCTGAACTCAATAAAACAAAAGTGTGGGAGTTGTAAGTGAACTCACACTGATCTACAATGTGACGTCGCAGATTACGTGAGTTGAAGAAACTACAGGTATTGACAATCGCTGAGTGACTGAACGGCGCGCTCACACTGCCGAGCTCCTCGCTGCCAGATTCAACTCTTCTGATGGGACGGAGACGCGAGTATCTGGGTAAACGCCACCAGTGCTTTTAACTCGCCAGTTTCTGTaacattgtagattttttttcgaTTTAAAAAACAAAGGAAACAAACGGATGCTACTCTGAGAGTGTCAAAGTGAGCTTACAGACTCTTCTCTGAACACACGCTCTGCCTCCTCCAAGAAAACCTCACGAGTATTTGACGCTtcgtgtttctgtgtgtgtgtgtctgagagagaaagagtgtgtgtgcgcTCATGTGACGTGGAGGAAATGTTGAATGTGAGAATCTCTTTCTCCGAAGTGTCCATGTATTTGTCCTTCACACTTTCCAAGTAGAGTTAGAGTGCTTTTCCATATTTGTATCGGAACTAAATTGCATTTGAAAGCgcttttataatatttttctaaGACGGCGGTGAGGGGATTGAGATCGAGTGGTTTTTGGTACAAGCAATGTAAaggagaaaataaaatgtttctttttgatTTGTCAACATTAAGAAACGGAGTCAATCAGatcatttaaaaaagggaaaaaacaatattaaagttGAAGCAATTACGTTA
>TCONS_00032890
AGCGCTGAATGAACGCAGACCGCGAGGACGCGCGCGACATTATCAGCACCGGTTCGCGGGGTTTCAGAGTCCGGCGTAAAGAAGATGAATTGACGGTGTGTTTTCTGAGTGACAGAGGTGGAGATGGGCTTCAGCATGACCTGCCTCTGGATTGTAACTCTGGCCATCATCAGCGTTCACAGAGTGTTCAGCGGGCCACGGTTTTCACAGGAGCCAGCGGATCAGTCTGTGGTGATCGGCGAGAGGGTGGTTCTGTCCTGCGTCGTGTTTAACTACACCGGCATCGTACAATGGACCAAAGACGGCCTCGCTCTTGGAATCGGAGAGGATCTAAGGGcATGGCCACGGTACCGTGTTTTGCGTATAATGGATGTTGGGCAGTATAATCTGGAGATCACGTCGGCGGATCTGACCGATGACTCCCTGTACGAGTGTCAGGCCACTGAAGCCGCTCTGAGGTCCAGAAGAGCTAAACTCACCGTTCTGAttCCTCCTGATGGTCCCGTAATTGAGGGATCTCCAGAGATCCTGTTGACGGCAGGAACCTCATTTAACCTCACCTGTGTGTCTCGAGGAGCAAAGCCAATGTCAACAATTGAATGGTACAAAGATGGGATCATAGTGGAAGGAGCTCATACCAGCACTGAGGTGTTATCGGACAGGAAAAGGGTGACCACAAAAAGTTTTTTGGAGATCCAGCCAATGGACACAGACACTGGACGTAACTTCACTTGCGTGGCCTCAAACCTGGCTGCTCCACTGGGGAAGAGATCAACTGTCACCCTCAACATCCACCATCCTCCTACGGTGATTTTGTCCATAGAGCCTCGCTCAGTTCTTGAAGGAGAGCGAGTTAAGTTCACCTGCCAGGCAACTGCCAACCCTCCTATAATGGGCTACAGGTGGGCTAAAGGTGGCGTGATTCTAGACGGAGCAAGAGAAAGTGTGTTTGAGACGACAGCAGATCACTCATTCTTCACCGAGCCTGTGTCCTGCCTGGTGTTTAATGCAGTGGGCAGCACTAACGTCAGTATATTAGTGGACGTTCACTTTGGCCCAATTTTGGTGGTGGAGCCAAGGCCTGTAACAGTGGACGTTGACTCAGATGTCACACTTAACTGTAAATGGTCAGGAAATCCTCCGCTTACCCTCACTTGGACCAAAAAAGGCTCCAGTATGGTCCTCAGTAACAGTAATCAGCTGTTCCTGAAGTCTGTGAGTCAAGCAGATGCAGGACAGTACGTGTGTAAAGCCATCGTCCCCAGAATTGGTGTTGGGGAGACTGAGGTCACACTCACTGTCAATgGTCCTCCAATCATCTCGAGTGAGCCGATCCAGTATGCCGTGAGAGGAGAGAAAGGGGAAATCAAGTGCTACATAGCCAGCACTCCACCGCCAGACAAAATCGTTTGGGCCTGGAAGGAGAACGTGTGGGAGAAGGAGCGAGGGACACTGCTGGAGAGATACACGGTTGAGCAGAGCAGACCTGCAACACAAGGGGGTGCCGTTCTATCCACACTCACCATCAACAATGTAATGGAGGCTGACTTCCAGTCCACGTACAACTGCACGGCATGGAACGCTTTTGGACCAGGAACCATGATCATTACCCTGGAAGAGACAGATATAGTGCCTGTAGGTGTGATAGCAGGCGGATCTGTTGgatcttccattttgcttctgcTTCTCCTCTTTGCTCTGATTTTCTATCTGTATCGACAACGCAAAAGCAGTCGTCGTGGAGTGACACTCAAGCCAGACATTAAGGTGGAAACGGTGAACAAGGAGACCAATCTGGAGGAGGAGGCCGCCAGCGCTTCAACAGCCACGCGAATGTTTCTTCCCTctgtctccctctctccctccacCCAGCCCTTCAAAGACGACATGGACCTGAAGCAAGACCTCCAGACCGAAACGCTGGAGCCCAAGGTGGAGGAGTATGAGGCCAAGGACCCCACGAATGGCTACTACAATGTCCGAGCCACGACTCATGATGAGGTGCGCTCTTCCACCCGCTCACTGCTCTACCAGGAATTCCGGGCACCTAATCCTGCATCAGTTTCAGCATCGACCGGCGGCCCTGCCAACATTCATCCCGCTCCTACAGGACGTTATGAGGCCCGTCCCACTTCCCGAATGGCTCACAACACCTATGCTCATTTCAACACAATCGCAAGGGCATCACAAATCCAGCCTCCAGCCAACCCCGTCTCCAAAACCACAGACTATCCTGCAGAGCGTGGCCTGCTGGAGTCCACCAATCCACTAGCTTTTGACAGCTACGCCTACTCAACCACACCTCAATACCGGTTAGGCTTTGCTCCGCCTTTGGAGGCGGGACCAGCCTATGAAATGTATCCAACGGGACAAGGGGTGGGGACGAGTCAAGATGCTAATGTAGGCAAATACCCAAGCTCCGCCCAGTTTCCATATTCAACCCCGCCCACGGAATACTCTCAAAGACACACGCAACGAATGCAGACTCATGTGTGAGGCTAAAAGAAAGCACTTCCTTGAACGCA

Function

symbol description
kirrel1b Predicted to enable cell adhesion molecule binding activity. Acts upstream of or within glomerular basement membrane development; glomerular visceral epithelial cell development; and pronephric duct development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell-cell junction. Predicted to be integral component of plasma membrane. Is expressed in brain and pronephric glomerulus. Human ortholog(s) of this gene implicated in nephrotic syndrome type 23. Orthologous to human KIRREL1 (kirre like nephrin family adhesion molecule 1).

GO:

id name namespace
GO:0032836 glomerular basement membrane development biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0039022 pronephric duct development biological_process
GO:0072015 glomerular visceral epithelial cell development biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005911 cell-cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0050839 cell adhesion molecule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-173 Predicted to enable cell adhesion molecule binding activity. Acts upstream of or within glomerular basement membrane development; glomerular visceral epithelial cell development; and pronephric duct development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell-cell junction. Predicted to be integral component of plasma membrane. Is expressed in brain and pronephric glomerulus. Human ortholog(s) of this gene implicated in nephrotic syndrome type 23. Orthologous to human KIRREL1 (kirre like nephrin family adhesion molecule 1).

Ensembl:

ensembl_id ENSDARG00000056998

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032889 False 3919 mRNA 0.49 15 43961626 44038776
TCONS_00032890 True 2525 mRNA 0.53 15 43962978 44038698

Neighbor

gene id symbol gene type direction distance location
XLOC_016776 si:ch211-195h23.4 coding downstream 19031 43940925 ~ 43942595 (-)
XLOC_016775 zeb1a coding downstream 109419 43807230 ~ 43852207 (-)
XLOC_016774 ftr16 coding downstream 216451 43742574 ~ 43745175 (-)
XLOC_016773 kif5ba coding downstream 221886 43705593 ~ 43739740 (-)
XLOC_016772 FO704635.1 coding downstream 263095 43678039 ~ 43698531 (-)
XLOC_016778 cadm3 coding upstream 10305 44049081 ~ 44183613 (-)
XLOC_016779 sdhc coding upstream 153876 44192652 ~ 44199840 (-)
XLOC_016780 atp1a2a coding upstream 164299 44203075 ~ 44255537 (-)
XLOC_016781 mpz coding upstream 220706 44259482 ~ 44283554 (-)
XLOC_016782 lig1 coding upstream 262500 44301276 ~ 44344321 (-)
XLOC_016770 NA non-coding downstream 331543 43629753 ~ 43630083 (-)
XLOC_016766 NA non-coding downstream 389866 43567145 ~ 43571760 (-)
XLOC_016764 CABZ01058723.1 non-coding downstream 444608 43509502 ~ 43517018 (-)
XLOC_016763 NA non-coding downstream 582533 43378102 ~ 43379093 (-)
XLOC_016755 NA non-coding downstream 974656 42981204 ~ 42986970 (-)
XLOC_016786 BX323035.1 non-coding upstream 484080 44522856 ~ 44524381 (-)
XLOC_016787 NA non-coding upstream 523238 44562014 ~ 44563193 (-)
XLOC_016791 CR788281.2 non-coding upstream 724306 44763082 ~ 44763375 (-)
XLOC_016792 CR788281.1 non-coding upstream 735499 44774275 ~ 44774595 (-)
XLOC_016796 NA non-coding upstream 1005706 45044482 ~ 45045520 (-)

Expression


Co-expression Network