XLOC_016787


Basic Information

Item Value
gene id XLOC_016787
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 44562014 ~ 44563193 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033929
CTCTAGGCCGCACTCCTCTGGCTCTGATGTCTGGTTTTCCACAACACCTGCTGGACGGTCTTGTAAATCTCCCGATAGCGCAGGACGTACAGAGCCAACTCAACCGCAAAAACCAAAGCAGGAACAAAATACATGATGAGTAACAAAGTGTGCGCCAAAAGCGTCATACGAGCCCTCGAATACCGACTTCGCCATATCCCGGAAGTCCTGGTGATGATGTAGAGATGGATGTAGCAGTATAAGATGAGAGCAGTGCAGAGGCTGACGGCGATAATAAAGTACAGAGGAACGCCAACCTTCAGCTTCTCTTCCAACGAGTGCAAAGCGATCAACACCAAACACACCGGCCGGCTCTGCTGGTCCTTTCCCATCACCACCTCAAACATCACCAATAGTGAAACCGGACACACAGCCGCAATCACCCACATGCTCATAATGATCTTCCTGGCCCGGGATGGCGGGAGAATCTCTTTGTAACGTAGAGGCCAACGTACCGCTACGTACGTATCGACGACCATCAGTGTGACGGTGAGTACAGATGCACTATATGTCATTACCATGCTAACCATCATAAACTCACACAGAGGGGCGGGCAAGTGAAGGCCCACCGAATTGCAGGACACTATCGACAGGTTTACGGTGAGGAAGAGCATGTCAGCGAAAAGGACGTTAGCGAGGAGCAGATAGCGGGTTTCTTGACGTAGCGAAGGAAAACAGAGTACGCAGAGGGATAGAACGGGATTGACTAGCATTGTGACGGAGGTTAGCAGAACCGTGGGGATGAGGAACATGTCCATGTTTCTGCTCTCCATAATGATGTACCAATCTGCAGAGATGTTGACGATGAAAGGCTGAATCATGTTGACGTCCGAGCCACTGAGATAAACCGGTAAGGTGAAGGATGGTCGCTTTTATGGATGGTGGAGCACATATATAGTTTCTCGACcttaagaaaaaacaaacaaacaaacatgagcGCAGAATTATGAACATCACCAAGATTCAAGATTTTATTTTGAACATAAGGTATCAGTGCTCGGGAAAAGTTACtgttaaaggggacctatcaAGCCCCTTTTTAGAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033929 True 1084 lncRNA 0.48 2 44562014 44563193

Neighbor

gene id symbol gene type direction distance location
XLOC_016786 BX323035.1 coding downstream 37633 44522856 ~ 44524381 (-)
XLOC_016785 pih1d3 coding downstream 155889 44400770 ~ 44406125 (-)
XLOC_016784 pip4p1a coding downstream 163403 44383175 ~ 44398611 (-)
XLOC_016783 si:ch211-265g22.4 coding downstream 193190 44366972 ~ 44368824 (-)
XLOC_016782 lig1 coding downstream 217693 44301276 ~ 44344321 (-)
XLOC_016788 map6d1 coding upstream 134375 44697568 ~ 44720551 (-)
XLOC_016789 acsm3 coding upstream 162357 44725550 ~ 44746723 (-)
XLOC_016790 ncapd2 coding upstream 186008 44749201 ~ 44777679 (-)
XLOC_016791 CR788281.2 coding upstream 199889 44763082 ~ 44763375 (-)
XLOC_016792 CR788281.1 coding upstream 211082 44774275 ~ 44774595 (-)
XLOC_016770 NA non-coding downstream 931931 43629753 ~ 43630083 (-)
XLOC_016766 NA non-coding downstream 990254 43567145 ~ 43571760 (-)
XLOC_016764 CABZ01058723.1 non-coding downstream 1044996 43509502 ~ 43517018 (-)
XLOC_016763 NA non-coding downstream 1182921 43378102 ~ 43379093 (-)
XLOC_016796 NA non-coding upstream 481289 45044482 ~ 45045520 (-)
XLOC_016797 NA non-coding upstream 489344 45052537 ~ 45067186 (-)
XLOC_016798 CR293505.1 non-coding upstream 510601 45073794 ~ 45073910 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000152_01669913_01670863 NA coding CI01000152 null 1669913 ~ 1671023 (+)