XLOC_016802 (capn10)


Basic Information

Item Value
gene id XLOC_016802
gene name capn10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 45139470 ~ 45154622 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032925
TCACGGTACACGACTGTATGACAGATTTTACTTCACTGTGATGCATTTTATTTTGCCTTCCGAACTAGCCATGCCATTAAATCGCCGGCTGTGTGTAACGGGTTAGAAAACCAGCTGATCTGACTGTACGTTGGAATGAATTATCATTAATATGGATAGCGTTACTGTTCCTGGATATGTCAACATTCTTGTctctaaaacaaataagagtcgACATCACCACATAAGCCGTCTTTGACAGCACTTCTCGTAACGTGTCTGCTTTCCATGGAGACGGACACTGAGCATCATGAGATGTTTGTGGATCTGGATTTTCCAGCAGATGATCCATCACTCTTTTGGGATTACACCACGCCGCTCTCCAAGTTGTTGGATGATGTCACATGGCTCCGCCCACaaGAGATCTGCCAGCAGCCTCAGCTGTTTCCTGATGACCCTTTGGAGGCTCACCCAAAGCAAGGCATTCTTGGAGACTGCTGGCTGCTCTGTGCCTGTTCCATGTTACTCAAGAACCAGCATCTTCTAGACAAGGTATTTCCACCAGAACAGCCTTTATGGGGTGACTCTGCTTACCGCGGTGAATTCCTCTTCCGCTTCTGGCAGAATGGACACTGGATTGAGGTGCGCGTGGACGACCGGCTGCCCTGTATCAATGATAATCTCTGCTTCTCACGATGCCAGAGCCCAAGGGCATTCTGGGTAGCACTTTTAGAGAAAGCATATGCCAAGCTACATGGTTCATATGAGCATTTGTGGGCTGGACAAGTATGTGAGGCGATGGTGGACCTAAGTGGAGCTGTAGCTGTACGATGGAGTATAAAAGATCCAGAGTCCCCACAACAGCCAAACGACAGCCAGATTCAGCACGCTCTGCATGGGCTGAGTGTGTCTGATCTCCCCCTGGAGCTGAAGGAGAGATGTGCCATCAGCTGCTGTGTGCACAGCGCCACTACAGGTTTTCCTGAGCTTGGCCAGTTTCATGCCATGTGTGTGATGGAGTGGACGAGCGTGACCACCATTACTGGTGAAGGAGTGCAGCTGATCAGGATACGAAACCCCTGGGGCAGGAGAAGCTGGGCTGGAGTCTGGAGGGAGAGggGATCCGGCTGGGCTTCTCTTGAGGCGTCCTGTGCTCAGACTCTGCTGTCCCGTACAGCAAAGGGGGAATTCTGGATGGATGAGGCTGAATTCCTGCAGGAGTTTGATGAGGTCACGGTGGGCTGTCCTGTCAATGATGCAGGACACCTCCAAAGCATCTACACAGGAAACTTCCTAACCCACAGTCAGCAGATTGGAGGCCGCTGGGTCAAAGGTTACTCAGCAGGTGGATGCCGAAACAACAGCACTTTCAGCAGCAACCCCAAGTTCTGGCTGAAAGTGTGTGAGCGAGGAGAAGTGTTTCTGTCTCTGCTGCAGTGCAGAAGAGCTGAATCACCAGCAGAGGGGGCCATTCAGCAGCACACACAGCTTCAGGCCATAGCACTGCACGTGTGGAAGGTGGAGAAGAAGCACTTTAACCTCACGCGGACATTGAACAAGCAACCGTTTGTGTCACACGCACATGCGTACGATCGGGAAGTGGTGGTACACACACACCTGAATCCTGGTTTTTACCTGCTGGTGCCGAGTACTTTCCTGCAGGGAGCAGAGGGACCCTTTCTGCTAAGAGTTCATTCTTCCTGCTCCACCTCTCTCAGtgtgatgAAGTCATCTCCTTCTCCTCTTCAGCTCAGTTCAGAGGGCGAGTGGGAAAACATCTGCTCTCACGGCTCCTGGTCCATCGGTTCATCTGCTGGAGGAAGTCGCAATTTCACCACACACGAACTGAACCCCCGTGTAAACCTTACTGTGATCTATGACCCTGGAGGTAACAATGTAAGGGTCACCCTGCACCAAAACAGGCCTGAAAATTCCCTCCATCCCATCGGCTTTCATATTTATAAGGTACCTGACGGTGGTTCTGGTTCTCTGTTAAGCCCTGGTGTCATGTCTCCAGTGGTCAGCTGTGTGCCTCATGCTTACTCCCAGGAGGTCAGTGTGTTTTGTCATCTACTGCCGGGTGAATACGTTGTAATTCCCTCTACCTACCAGCCGGACCTCAGTGCTGACTTCACACTTACTATTAAACGCAAGATACAGCGGAAGGCAATGCAGAGTCAAGAGCTTCTGGGCCGTGCCGTTCAGGAGGTCTCCTGTATCTCTGTGATGAAACGATAGAAAAGTGGATCAGATGGTGACAAGAGTCTCGTTCACTGAGCTGATCTCTGATGGAGCCGTCGGTGCACATCGCTACAAACAGCTATCAAATGCCACCAGTGAATCATGGTATATACTAAATATAATGTACAGGGTATATAATAAATCAGGGTATACCCATccctttaagaaatatatatatgagCTTGGACCTCAAAATCTTCTAAAATCCTAAATCCAAAACCTAAATTCGTACATTTCCAtttttaaactgaataaataagcacttaattgatgtatggtttgttgggATTGGACAATATTAAGCCAAGATATAACTGTTGGAAAATCTGGAATCCAAAGTTTCATAACTTTCCTTTAAAGTTGTTCAAAcaaagtgcttagcaatgcacattactaaaaaattgagtatttgtaatatttacagtagtaaattcACAAATTATCAATAGGGTTGAACTGGAATT
>TCONS_00032926
GGTCTGCTTTCCATGGAGACGGACACTGAGCATCATGAGATGTTTGTGGATCTGGATTTTCCAGCAGATGATCCATCACTCTTTTGGGATTACACCACGCCGCTCTCCAAGTTGTTGGATGATGTCACATGGCTCCGCCCACaaGAGATCTGCCAGCAGCCTCAGCTGTTTCCTGATGACCCTTTGGAGGCTCACCCAAAGCAAGGCATTCTTGGAGACTGCTGGCTGCTCTGTGCCTGTTCCATGTTACTCAAGAACCAGCATCTTCTAGACAAGGTATTTCCACCAGAACAGCCTTTATGGGGTGACTCTGCTTACCGCGGTGAATTCCTCTTCCGCTTCTGGCAGAATGGACACTGGATTGAGGTGCGCGTGGACGACCGGCTGCCCTGTATCAATGATAATCTCTGCTTCTCACGATGCCAGAGCCCAAGGGCATTCTGGGTAGCACTTTTAGAGAAAGCATATGCCAAGCTACATGGTTCATATGAGCATTTGTGGGCTGGACAAGTATGTGAGGCGATGGTGGACCTAAGTGGAGCTGTAGCTGTACGATGGAGTATAAAAGATCCAGAGTCCCCACAACAGCCAAACGACAGCCAGATTCAGCACGCTCTGCATGGGCTGAGTGTGTCTGATCTCCCCCTGGAGCTGAAGGAGAGATGTGCCATCAGCTGCTGTGTGCACAGCGCCACTACAGGTTTTCCTGAGCTTGGCCAGTTTCATGCCATGTGTGTGATGGAGTGGACGAGCGTGACCACCATTACTGGTGAAGGAGTGCAGCTGATCAGGATACGAAACCCCTGGGGCAGGAGAAGCTGGGCTGGAGTCTGGAGGGAGAGggGATCCGGCTGGGCTTCTCTTGAGGCGTCCTGTGCTCAGACTCTGCTGTCCCGTACAGCAAAGGGGGAATTCTGGATGGATGAGGCTGAATTCCTGCAGGAGTTTGATGAGGTCACGGTGGGCTGTCCTGTCAATGATGCAGGACACCTCCAAAGCATCTACACAGGAAACTTCCTAACCCACAGTCAGCAGATTGGAGGCCGCTGGGTCAAAGGTTACTCAGCAGGTGGATGCCGAAACAACAGCACTTTCAGCAGCAACCCCAAGTTCTGGCTGAAAGTGTGTGAGCGAGGAGAAGTGTTTCTGTCTCTGCTGCAGTGCAGAAGAGCTGAATCACCAGCAGAGGGGGCCATTCAGCAGCACACACAGCTTCAGGCCATAGCACTGCACGTGTGGAAGGTGGAGAAGAAGCACTTTAACCTCACGCGGACATTGAACAAGCAACCGTTTGTGTCACACGCACATGCGTACGATCGGGAAGTGGTGGTACACACACACCTGAATCCTGGTTTTTACCTGCTGGTGCCGAGTACTTTCCTGCAGGGAGCAGAGGGACCCTTTCTGCTAAGAGTTCATTCTTCCTGCTCCACCTCTCTCAGtgtgatgAAGTCATCTCCTTCTCCTCTTCAGCTCAGTTCAGAGGGCGAGTGGGAAAACATCTGCTCTCACGGCTCCTGGTCCATCGGTTCATCTGCTGGAGGAAGTCGCAATTTCACCACACACGAACTGAACCCCCGTGTAAACCTTACTGTGATCTATGACCCTGGAGGTAACAATGTAAGGGTCACCCTGCACCAAAACAGGCCTGAAAATTCCCTCCATCCCATCGGCTTTCATATTTATAAGGTACCTGACGGTGGTTCTGGTTCTCTGTTAAGCCCTGGTGTCATGTCTCCAGTGGTCAGCTGTGTGCCTCATGCTTACTCCCAGGAGGTCAGTGTGTTTTGTCATCTACTGCCGGGTGAATACGTTGTAATTCCCTCTACCTACCAGCCGGACCTCAGTGCTGACTTCACACTTACTATTAAACGCAAGATACAGCGGAAGGCAATGCAGAGTCAAGAGCTTCTGGGCCGTGCCGTTCAGGAGGTACCAATCTTTTCTCTCACTAAAAACTCGCATTCAGATGAATGA
>TCONS_00032927
CTTCCGGTTATGGGCTCTATCATCCTGGCGCAGAGTGTTTACTTTTTTGAATGCATTGAGTGTATCTGAACGTCACGGTACACGACTGTATGACAGATTTTACTTCACTGTGATGCATTTTATTTTGCCTTCCGAACTAGCCATGCCATTAAATCGCCGGCTGTGTGTAACGGGTTAGAAAACCAGCTGATCTGACTGTACGTTGGAATGAATTATCATTAATATGGATAGCGTTACTGTTCCTGGATATGTCAACATTCTTGTctctaaaacaaataagagtcgACATCACCACATAAGCCGTCTTTGACAGCACTTCTCGTAACGTCAGGTCTGCTTTCCATGGAGACGGACACTGAGCATCATGAGATGTTTGTGGATCTGGATTTTCCAGCAGATGATCCATCACTCTTTTGGGATT

Function

symbol description
capn10 Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to act upstream of or within cellular response to insulin stimulus. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in obesity; pancreatic cancer; polycystic ovary syndrome; and type 2 diabetes mellitus. Orthologous to human CAPN10 (calpain 10).

GO:

id name namespace
GO:0032869 cellular response to insulin stimulus biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-110411-137 Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to act upstream of or within cellular response to insulin stimulus. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in obesity; pancreatic cancer; polycystic ovary syndrome; and type 2 diabetes mellitus. Orthologous to human CAPN10 (calpain 10).

Ensembl:

ensembl_id ENSDARG00000076634

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032925 False 2684 mRNA 0.48 13 45139470 45154550
TCONS_00032926 False 1977 mRNA 0.52 11 45140146 45153531
TCONS_00032927 True 421 mRNA 0.43 2 45153441 45154622

Neighbor

gene id symbol gene type direction distance location
XLOC_016801 eif4e2 coding downstream 3852 45116819 ~ 45135618 (-)
XLOC_016800 CU929150.3 coding downstream 39966 45099174 ~ 45099504 (-)
XLOC_016799 NA coding downstream 41072 45095017 ~ 45098398 (-)
XLOC_016798 CR293505.1 coding downstream 65560 45073794 ~ 45073910 (-)
XLOC_016797 NA coding downstream 72284 45052537 ~ 45067186 (-)
XLOC_016803 CR407590.2 coding upstream 18216 45172838 ~ 45191319 (-)
XLOC_016804 dre-mir-181b-1 coding upstream 47601 45202223 ~ 45202331 (-)
XLOC_016805 NA coding upstream 70500 45225122 ~ 45227245 (-)
XLOC_016806 si:dkey-13n23.3 coding upstream 175830 45330452 ~ 45331115 (-)
XLOC_016807 SAMD9 coding upstream 177515 45332137 ~ 45336975 (-)
XLOC_016796 NA non-coding downstream 93950 45044482 ~ 45045520 (-)
XLOC_016808 NA non-coding upstream 258979 45413601 ~ 45415299 (-)
XLOC_016809 NA non-coding upstream 273036 45427658 ~ 45448291 (-)
XLOC_016811 NA non-coding upstream 401558 45556180 ~ 45556664 (-)

Expression


Co-expression Network