XLOC_016807 (SAMD9)


Basic Information

Item Value
gene id XLOC_016807
gene name SAMD9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 45332137 ~ 45336975 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032931
ATGAATCAAAAGACAACACTTCCCTGCCATGTGAAGGAATGGACAAAAGAGCAAGTTCATTATTGGTTAACTGAAGTAGTTAGATCAGATAAAAAATATGTAGAAAAATTATATGAAGAAGATGTAGACGGAAAAGCATTAATTTGCTATAAATCAGATGATCTTCATTACCTTGGCATTAAGCATGGTCctgctgttattattatcaaCCAATTAAAGGAGTACAGACGGATTCATGAACCCCATTTTGCATCCCCTGAACATTCCCCAACACAACAAGAAGAGGACAGACTGGAAAAACCAGAGGAAATTCAAGACCTCTCATCAGATCAAATGCCTAGGCACACTATGAAATCGAAAGGAAAATCGAACCAAAAAATGAACTCCAACAAATGTCGAACAACAAACACAGATTCATTAGATATAAAAACAAACCCTCAAACAGCACATTCTCAGCCAAAAGGACCTCTAGCTAGTACCTTTACCAAAGAAACTGAACTAGGAAAGTCACCTGCCTTTAAAACAGCAGTCATCAATGAAGAAAACATAATAAGCAAAGAAAACAGCACAAGAAAATCTGAACAACACTCATGTAGTTTCTACAAATTTGACCAGAGCTCTGCTTCTCATCGATACATTCAAAACTACGTATTGCCACCAGAGACTGGACCAGACAATCTGATTGATCCAGTTCATGAGTATAAGTTTATGGGCAGAACAGATGATATGACTGTGATGAAGAAGAAGTTCAATAAGGAGGTGTTTCGCTTTGCTGCTGGCTGCATGAACAGCCGCACTAATGGAACAATCCACTTTGGTGTAGCTGACTCTAAAGATTCACACTATGTTCATGGAGAGATCATCGGGATCAGTGTTGACAAGAAGGATGCTATCATTGATCACTTTCATCAGGGCATTAAACAATACTTTGAAGAACAAACACAAGAAGCAAAGGCATGCATCAGACAACCACGCTTTGTAGAAGTTCTCTGTCCTGACAGCACTCTATCTGGAAAATATATCATAGAGGTGGATGTTGTACCATCCCACATCATAGTTCATGGAAAGCAGTTTGAAATCCAGACTCTCGATGAAGAAAATCAATGGAAAAAGAGCAAAGGAAAGTCACTCTTCATCAGAGATGGAGCTGCAACTAGAGATATTTATAAAATTGGGAATCCAAAAGACTTGCACTATGAATTGacacgaataaatgaacaaataaatgttcTGGACATGAGGAGGAGGGAGGCAGAAAAGAGACCCGACAGCAAAAGAACATCAAATCAAGGGGAAAAACTGAAGAATCTGCTGACATGTGGAGGAAACAGACTGAATCATTATGATTATTTCATCATTGTAACAAACAAAAGTCACCCTGAACAGCTGCAGCATCTTCAGTTCATGGCAACCTTAAAATTGTTCTGTGTGCTGGACTTTGATCCAGATTCTGTAGTAAATGGATCCTGCCACAATTACAAAGATGTTCGAATTGCAAACCTTCACACAGCAAGCCAGTTTAATGGGGACCCAGGAGCAATTGTGAAAAATCTCAACTTGTACAAACAAACAAGTTGGGTATTCTGTAACGGCAGAAAAGACCTTAATACAGAATCTGACCGACCACTTAAACCAAGTGAATGGTTAATACATAAAGCAGGAGAGGTACAAGACTTGATCTCTTTCATCTGCAATCCATATACTCTCCCAAGAGGACGATTCTTAGTCATATTTCTCCTCCTCTCCACTGTTGAGGCTATGAACGACCCAATTTTTGATACATTCATGTCCTTTTATAAAAACCTTGGTGGTGCAAAGAACATTTTAAGTATTTGCAGTTCTGATGCTTCGTTTCAAAAATGGAAGGATTACATTCAGGCCAGATGTGAACATGACATCAGTCAGCGGAGTATATATGATCTGGAGCTCAGTGAAATTAATGGGACGATACTGAAACTGGGACAGAACAAGCAAAATGCACAGAAACTTCTTCCATCTGCTGAAGGCAGTTCAGTGATTCTGCAGAAGAAAGATGAAGACCTCATGACATCCCTTGATGTCCTTTGTGAGAATGAATGTGAAAATGAATATGACGAGAGCTCTGCAGAATTTGAAGAGTTCAAAATTAAAACTGAGTCTGAGTTCTACAGGGGAGGCAAAGTCAAATGGTGGAACTTTTACTTCTCAGAGCAACCTGCAGCAAAACCGTTCATAAAACGAGACAAACACTCAAAACTCGAGAAAAGTATCAGATCTCAGACCAAAAATAACACAAGAACATGTGTCATGGTGAATCTATTTCATCACCCTGGGTGCGGCGGCACCACCATGGCCATGCATGTGATGTGGAATCTCAGAAAAGAATTCAGATGTGCGGTGTTAAAAGACAACACCGTTTCAAAGGACGAAGTGGCCAAACATGTTGCTCATTTGATGAAGTGTGGAAAAAGTGAGCAATCCTTAAAAACACCAGTCCTGCTACTAGTGGAAGATTCAGAAGAAACAGAAAACACAGTTGAACTTCAGCACTCTTTGAGAAAATTTACAAGAGAAACAGGAGCATTTGTCATCATCTTAAACTGTATACGCACAAAAACGCCAAAAGTTAGGTACTACAATACTGTCATTGAAAGTGAGTACATTACAGCAGCGCTATCTGACAATGAAAAACGTGCTTTTGAAATGAAGCTTAAAGAACTTCAAGAAATAAAGTCTTTCACAACTGAGAACTTCTACAGTTTCATGATCATGAAATCAAATTTTGACACTGAATATGTTGAAAATGTTGCATCTAACATTCTGAAAGATTTCAGAGTTGAAAGCAAACAAGCACGACTCTTCTGCATGCTGGCTTTACTTAATACATATGTGCCTGAACCAGCCATTTCAAGATCTTTATGTGAAGATTTTCTAGGTATAAAATGTGCATTGTGGGGAAGAGAATCAGTGCTGGAGAAAATGGAGCCCTACTCCTGTTTGTTGATTGATTTCGAGGCAGAGGAATATGGAGGACTTAAAGCAATTCGCTTTGTTCATCAGAACCTTGCAACAGAATGTGTGAAACAACTAGAGGAGACACATAACTGCTCTAAGGCTGAAATAGTACTAGAGATGTTGCATTGTGATgccctttttaaaacatttgcagtAAAGGATGTTCTTGTTCAGTCCATCAAATGCATGCTGATCACTCGTCAACGCAAGACAGAAGACAATGAGAAAGACACTCTGTTTTCACCTTTGATAGAAGACATAAACTCAGGAAAAGATGGATTGAACAAAATCCAAGAAATCTTTATTGCAGCATCAGAAAGATTCAATAAAGACTTCACAATACCTCAAGCTCTAGCAAGGCACTTCTACCTGAATGAAAAAAACTTTACTGATGCTAGAACATGGGCAAACAGTGCGAAAGCAATCAAAGAAAACTCCTACACTTTAGATACGGTTGGACAAGTTGCTAGAAGTGAATTAAAACATAAGATTGAGTGTAAAAAGCAGGAGAAGAAACCATGCTCAGCTGAAGACTTGAATGATTGTCTTGAGTTAGCAAGCACAGCAACCAAAGCTTTCAGAAGAGCTCAGAGCTTGGCAAAGACAGATGATGTTCTTGAAAGTGAACAAGAACTACACAGAAAGTTGAGCCCATATAATATATCTGGCTACATGGGTGAGATTGACACAGCCATGATTGTTTTTGACATCATCAAAAAACTGGAACTCTTTGAGAAAGGTGATCCGATGAAAGACCATTACATCCAGAGCTTCCTCAAAGGAAAAATGCCTTTTGAAAACATTCAGTTCTCTATAAAAGAATCCAGCAGTGAATATGCTGTGGTTCTTAAGGACTATGAACATTTTCTGAAATCTTTAAAACCACAGGTGAAAGAGGCATTTGACTTCCTTGAAATTTACTTCACTTACATGAGAGAAAAGAGAGTTGATGATGGAAAAGATATAAAGAATCGTAAAAAACTCTCTGCACACTACCAAAACTACATTGCATTATTTTGCTCATCAGCAGAAGAAAAGCAAACAGAGAGAAATCAAAAACCAAAACTGAGTTTGAATATGAAAATTGAGGAGTATCGAATGTTCCTGGAGGAAAGCAGAGCAGACATTTTCCCAGGTCTTCTCAGGTTTGTTGAGGATAGGAATGAGACAGTAGAAATGATCGCTGAAAAATACTCATTCATACTTGAGAGTTCTGCCATCAAAACTATAAAGGACAAAACAAATCATCTGCTTGCACATATCATACTTAAGTTGATTTGGCCAAAATCAAAACTAGCAAAATCCACAGAGGACCtcaatgtgcttttaaaagataTTCTGCAAGAGGTCAGTACACAGCACCAACATCCAGAGCCGTTTTATCTGGCCATACTCTTGCTCTGGCCAGGAAGAAATGTCAACAGCAGTGGCATTAAGATTTATGTTGATAAAATCAGAAGCTCAGCAAGAAAACACCTCTCTTACATGTACAGAACAAGGTCAACCATTGCTCACTTCTTCCTGGGAAAATCTGATGGAATACAAAGACTTGTGCCAAAGGTTTTCCTTGACAGATCTATCAGGAATGTGCGGGACCGCAACATTCTTTGGCAAACAGGAGAAATCTTTAAGGAACACCCAATAACTAGCAAGCTTGTCAGAGTAAAAGGAACTATTGAGGATGGAGAGGTCTTCACAGAGTATGGTAATCTTAAAATTCCTGTGAGACCTGCATTTCTAGGTGGAGTGAGAAGCGGCTACAGCACTGAGGTAGTGTCCTTCTACATTGGCTTTGCCATGGATGGTCCACTTGCTTATGACATTCAATATGAAGATgacagataa

Function

symbol description
samd9 Involved in endosomal vesicle fusion. Located in cytosol and intracellular membrane-bounded organelle. Implicated in normophosphatemic familial tumoral calcinosis.

GO: NA

KEGG:

id description
ko04131 Membrane trafficking

Ensembl:

ensembl_id ENSDARG00000102729

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032931 True 4839 mRNA 0.39 1 45332137 45336975

Neighbor

gene id symbol gene type direction distance location
XLOC_016806 si:dkey-13n23.3 coding downstream 1022 45330452 ~ 45331115 (-)
XLOC_016805 NA coding downstream 104892 45225122 ~ 45227245 (-)
XLOC_016804 dre-mir-181b-1 coding downstream 129806 45202223 ~ 45202331 (-)
XLOC_016803 CR407590.2 coding downstream 140818 45172838 ~ 45191319 (-)
XLOC_016802 capn10 coding downstream 177515 45139470 ~ 45154622 (-)
XLOC_016808 NA coding upstream 76626 45413601 ~ 45415299 (-)
XLOC_016809 NA coding upstream 90683 45427658 ~ 45448291 (-)
XLOC_016810 gpsm2 coding upstream 154057 45491032 ~ 45510704 (-)
XLOC_016811 NA coding upstream 219205 45556180 ~ 45556664 (-)
XLOC_016812 CR450720.1 coding upstream 292732 45629707 ~ 45630823 (-)
XLOC_016800 CU929150.3 non-coding downstream 232633 45099174 ~ 45099504 (-)
XLOC_016799 NA non-coding downstream 233739 45095017 ~ 45098398 (-)
XLOC_016798 CR293505.1 non-coding downstream 258227 45073794 ~ 45073910 (-)
XLOC_016815 CU467828.1 non-coding upstream 407888 45744863 ~ 45744979 (-)
XLOC_016816 NA non-coding upstream 682386 46019361 ~ 46034111 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000152_02190690_02206511 NA coding CI01000152 null 2190682 ~ 2206658 (-)
tiger barb (Puntius tetrazona) G14532 NA non-coding NC_056700.1 CM032069.1 22467860 ~ 22472603 (+)