XLOC_016809


Basic Information

Item Value
gene id XLOC_016809
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 45427658 ~ 45448291 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033934
GTTCAGTTTACTGTAGTATTCCTCTCTCCATGTTCACATCAGCTTCATGATTAGCTGTCACACCACCTGTTCAGCAGGACATCACCAAGGTAAAGATGGTTAATGCTGACTAAACTAATCATAATTGCAGATTTGTGAACTAATAAATCAGAATAGAGATGCTCTTACCCAGGTCTCTGAAGAGGTATGGCTCATTATTTCTCAAAGCATAATAAAAGTCTGTTTTCACTCGGTCTCCGCCAGCGTTTAGCGCATCATAGAGCTTTCTCATTTTACCCTGGCTGGTTTTTTCTGCTTTAATCTCTGCGTAGGTTTCATCGTGAATCTTGTTTTTCAGCTCATCTGCTATTGGCATCACTGCTATAACCCTTTGAATAAGGACGGCGCGGTTCCGATCCACAAATTCGGCCTCTGTGCATAAAAAACGCGAATAACATAGGACTATAACATTGCGATTATTTGTAGAGAAACATTTTCTGCATCATTAAACAAATTATGATACATTGTAGTTATTTAACAGTACAAAGAAGAGATTATAGCTTTAAACTACTTTGAAAAGTTGTCAGATCGCGCGCTTTCTCTTACCGTAGTTGCTCATTCTGTTGAATAATGATCATATCTGCAAATAACACGATGATCAGCCAGGCACAAACTTTTAcctcttaatattttaaaagcgCGTCTTAGGCAGCTTTGCAAACGGCAGTCAAGTTTCAACCGAACTAGTTTAATGCAAGGAACTAAAAACGAAAGTAAGTTTTAAACTTCCGTCCTTGTTGACAacgtgtactgtac
>TCONS_00033935
ggaGGAGCCAAGATGGCAGCGGAGTGAATGGTCACGTTTTTTAGCGCTTATGCACTACGAGGAGTTTTAAAGTTAACAAAGTGGTTATTTTGCATGTAGAATCTTAAATTTTGAAAGTTAATGTGTTCCTGAATATTTTTAACGGACATTTTTAATTTCTGACGTGacaatggggaaaaaaagaaagaatcagTCCCTTCAGGAAAGTGCTATATTGGCTGGATACCTCGTGGAAGAAGGGGACATGGAGTCTGCAAACTTGGAAAATATCGATCTTGAGACAGAAATTGGTGCCAATGAAGAGGTTTTTGCAAAGCCTATTTGTTCTACTCCATCCAAGAATCATACGAGATCAAAAGGTACGGATGAAATATCCTTATCTACACTCCTTGACGCGATTCAGAAGCTAACCGCTAAAATGGATGAAACGCAGAAAATCTACGTCTacgtcccgtgaaggagctccggatggaaagttttgttttgtgtttacctcatagttaaagttgttgcacgtccgccggttcctgcctcaaaatgagcgagtttgagccacttgtacatcccagaagtgttcaggaaatgcaaaaaagtagcgaagaaactcgacacagaggaacatttacacctcactgccaactagcgtttcggaagtttCGGAAGCGTttcagagacagcgcgcagaagtataaatgcacagccacgcgcgttgcctgcgccgtgggttacgccggtcacctgacgcggAAGTATGAATCAGGCTTAAGAGAGAACTTTGACGAAATGCAGCGCTACTCCCGGCGATGGAATCTTAAGTTACAAgatagaattACAAGGGGTTCCAGAGCGCGACGGAGAAGACACGAGAAGTGTGACGATCAGCATCCTGAAACAGGTGGTCCCTGGCATACAAGACAAGATGGAAGATGTAATTGATGTTGCTCACCGCCTGGGGCTAAGGAGGTCTGACGGAGCACCTCGTAACATCGTGATGCGTTTTACTATGCGTACCTACAGGGACATTGTATGGCGAGCTGCAAAAGAGTCTCGCTATCTAGCGGAAAACAGAATTCGCATCAAGGAGGCGTTAATCAAACAGGATGTGGATGCTAGAGCCAAGTTATGGCCTTTAGTGAAGAAGGCTCGTGAGGAAGGCAAAAAGGTTTCGTGGAATGGCCCCTATGCTTTTGTTGCTGGAAAAAAACTTGAACTTATTCCCTAAAAACTTTACGGAGCATATGTAGCCGAACGTAATTTTTTAGTTATCTAAGCAATCTCCAATTGAAGAATAACTAACGGTATATCTGAGACTTTTCTTTTTCCCTATTGACTGTCATgactatattttatatgtaatttgttCCTTCATAAGTAATTGCACTACTGGCTAAGGTTCATGTTAGCTTTATTCTCCTCTTTGCCGTTACTCGTTTACAGCGGTAAGTTCAAGAAGTGTGCATTGTTAACTTTGTTCTATTTGCATTCAACTTTATTCTAGTTTTCTCTTTTATCTCTgtttctagttattattattattattttatatgaatgTAAAAAACTTTGAGTTTAA
>TCONS_00033404
agtttatttaaaaagcactctTAATACACAATGATAATTTAAGAATAAATGCATCATATCTCCTATTTCCTCCTTTTATCATGCAATTTCATTGATtacaaacacaaatcacaaaaagTCTGTTGCTCTTCCTATTGCAGCTCTAAATTGACACATGGGACATGAAACAAACATTGGCAAGAATCTCACTTAATATGTTATTAAAGTACAACTTATTACATTACTATGTAATATGTGGCAATTATGAATACAAATATTGTGCAAGTACATgcaagtataaaaaaaaacattccaaagTAAATAATAGCATTGTAAATCCCCAAATGCATAGATTTTCATTTTAACCTCTTTTCGTCCACATGAGCAGCACTCATTTCATGACACTGTTATTTGCTGTcttgaaaatagttttttatttacatgtacTTCAGCAGAGTAACATTTTAAAGGAGGGAGCCAGTGGTGAAGTTCACAAGTCTCAATCTGGCCATATTTTGCTTGCGTACAATTATAGACAGTGAACGTTAGCAGCTTGATTTTACAAACTGATAGTTTGTAAAAAGCGATGACGTCACCTCCTTCATAGAGGTAAGCGTGTTTTTCTACTCCTTTAAAACGCAGAGTTTGACAGAAAAGTGTGGTGTACATTTTGCTCATAATCGACTACAACGGTAAATAATTGAATTTGTATTCCTTACTTGCTGATTAACAAACTTATTGAACGCAGAGGtcggaatgtgcgaatataaaaccaactttacctctat
>TCONS_00033936
AGTAttggtcattttattttataaatgttgtgACATCATGTTGCAAGTCAATgaggttttacatttaaaatataaaaaacaggtGGTATACATCATACAAGTTCAATACTAGTTAGCTATAGTATAAAAAAGAGCtactttttaagcattttaattaataataagacTTATTTGATACTTGATTgtgttttaaaacttaaaaaaatagtaatataatataaaaatacttaaaaaatgtaaaaattgattCATAACATGTACTTTTgatgaattaaaaatgtttacttacAAAATGAACACCAATATGACTTTTCTTATTTAAAACACAAAGATCAAAAGATCTGAAAGATTCAACCTTCAACAATCAATACATTCATCCTTCATATTAAACAGATCCATTTCTCCTTTTGTTTCATTTACAAAAGAGTCATATCTTTGGTCAAATGCCTGGGTAAACTGTTCCCTTAGTAACTGCATTTATGAAACTTTCCTTAATCTCAAGGTGGCTGCATCTTTTCAGGTCACATTCGTTTCCAATTGCAGGGGTCTTCTTCTGTGTCTTCGGTGCAAGGAGTGTTCAGTTTACTGTAGTATTCCTCTCTCCATGTTCACATCAGCTTCATGATTAGCTGTCACACCACCCAGGTCTCTGAAGAGGTATGGCTCATTATTTCTCAAAGCATAATAAAAGTCTGTTTTCACTCGGTCTCCGCCAGCGTTTAGCGCATCATAGAGCTTTCTCATTTTACCCTGGCTGGTTTTTTCTGCTTTAATCTCTGCGTAGGTTTCATCGTGAATCTTGTTTTTCAGCTCATCTGCTATTGGCATCACTGCTATAACCCTTTGAATAAGGACGGCGCGGTTCCGATCCACAAATTCGGCCTCGTAGTTGCTCATTCTGTTGAATAATGATCATGTAGCCGGGGCTGGTCTTAACGGCTCGACTACCCCTCtgcgttgtgttgtgttgtgttgtgtaaaGTAAAGAGCTGGAGTCTGTCTGCAGGTTCAGCGGTCTCATTTATTTAAGTGCTGCACAAACAGAGAACATGCAGTTAGTCTTCTCTTAAAACTCCTCTTACGCCTGCTACTGctcatagttaaagttgttgcacgtccgccggttcctgcctcaaaatgagcgagtttgagccacttgtacatcccagaagtgttcaggaaatgcaaaaaagtagcgaagaaactcgacacagaggaacatttacacctcactgccaactagcgtttcggaagtttCGGAAGCGTttcagagacagcgcgcagaagtataaatgcacagccacgcgcgttgcctgcgccgtgggttacgccggtcacctgacgcggAAGTATGAATCAGGCTTAAGAGAGAACTTTGACGAAATGCAGCGCTACTCCCGGCGATGGAATCTTAAGTTACAAgatagaagtaaagttggttttatatttgcacattcgcaCTTACGCTCCCctaataaaatattagaaaactaTTGTTTGCAAATTCCAAATAGCGAAATCACACTAGCAGACAACTATTATCAAACTACAACAGCGTTCATGGTCAAAGAAATCATGCTAGTGTTGTTTGAAGTGTTACTTACATgggatttcagaccgaatattcaatatCGCGTGAAAAACAACAAAGGGACCGTGTCACAAGTTCTCAGGTTGTTGAAAAACGAACAAAAGGAATTCAGCCAACTACTATAACGGTAGGTTTTGAAATCATGGCCTGTGCACATCAACATCTGTGGACCCTGCAGAACATGCATGCAACCTGTGCCTTGCTGTTTTCCTTACCTCTGTCTTACCCATTGTCTTAACTAAATATTGTAACACTGTCATTtctgttttttctgtttatgACATGTTGTTGTACATTAAACTATCATTATATCAagtttatttaaaaagcactctTAATACACAATGATAATTTAAGAATAAATGCATCATATCTCCTATTTCCTCCTTTTATCATGCAATTTCATTGATtacaaacacaaatcacaaaaagTCTGTTGCTCTTCCTATTGCAGCTCTAAATTGACACATGGGACATGAAACAAACATTGGCAAGAATCTCACTTAATATGTTATTAAAGTACAACTTATTACATTACTATGTAATATGTGGCAATTATGAATACAAATATTGTGCAAGTACATgcaagtataaaaaaaaacattccaaagTAAATAATAGCATTGTAAATCCCCAAATGCATAGATTTTCATTTTAACCTCTTTTCGTCCACATGAGCAGCACTCATTTCATGACACTGTTATTTGCTGTcttgaaaatagttttttatttacatgtacTTCAGCAGAGTAACATTTTAAAGGAGGGAGCCAGTGGTGAAGTTCACAAGTCTCAATCTGGCCATATTTTGCTTGCGTACAATTATAGACAGTGAACGTTAGCAGCTTGATTTTACAAACTGATAGTTTGTAAAAAGCGATGACGTCACCTCCTTCATAGAGGTAAGCGTGTTTTTCTACTCCTTTAAAACGCAGAGTTTGACAGAAAAGTGTGGTGTACATTTTGCTCATAATCGACTACAACGGTAAATAATTGAATTTGTATTCCTTACTTGCTGATTAACAAACTTATTGAACGCAGAGGtcggaatgtgcgaatataaaaccaactttacctctat
>TCONS_00033405
CTCAAAGCATAATAAAAGTCTGTTTTCACTCGGTCTCCGCCAGCGTTTAGCGCATCATAGAGCTTTCTCATTTTACCCTGGCTGGTTTTTTCTGCTTTAATCTCTGCGTAGGTTTCATCGTGAATCTTGTTTTTCAGCTCATCTGCTATTGGCATCACTGCTATAACCCTTTGAATAAGGACGGCGCGGTTCCGATCCACAAATTCGGCCTCGTAGTTGCTCATTCTGTTGAATAATGATCATGTAGCCGGGGCTGGTCTTAACGGCTCGACTACCCCTCtgcgttgtgttgtgttgtgttgtgtaaaGTAAAGAGCTGGAGTCTGTCTGCAGGTTCAGCGGTCTCATTTATTTAAGTGCTCGCTCTGCTCTGTCCTCCGACAGACTGC

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0009798 axis specification biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001707 mesoderm formation biological_process
GO:0001710 mesodermal cell fate commitment biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:1905770 regulation of mesodermal cell differentiation biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0007501 mesodermal cell fate specification biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0001756 somitogenesis biological_process
GO:0001757 somite specification biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0035282 segmentation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0009888 tissue development biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0044237 cellular metabolic process biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1905902 regulation of mesoderm formation biological_process
GO:0009948 anterior/posterior axis specification biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0048333 mesodermal cell differentiation biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0007379 segment specification biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0000578 embryonic axis specification biological_process
GO:0007389 pattern specification process biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0061053 somite development biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0032525 somite rostral/caudal axis specification biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042661 regulation of mesodermal cell fate specification biological_process
GO:2000380 regulation of mesoderm development biological_process
GO:0009790 embryo development biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033934 False 795 lncRNA 0.38 2 45427658 45442382
TCONS_00033935 False 1570 lncRNA 0.42 2 45431839 45440911
TCONS_00033404 False 767 lncRNA 0.33 2 45432582 45433628
TCONS_00033936 False 2672 lncRNA 0.37 8 45432582 45448291
TCONS_00033405 True 389 lncRNA 0.47 3 45441007 45442182

Neighbor

gene id symbol gene type direction distance location
XLOC_016808 NA coding downstream 12359 45413601 ~ 45415299 (-)
XLOC_016807 SAMD9 coding downstream 90683 45332137 ~ 45336975 (-)
XLOC_016806 si:dkey-13n23.3 coding downstream 96543 45330452 ~ 45331115 (-)
XLOC_016805 NA coding downstream 200413 45225122 ~ 45227245 (-)
XLOC_016804 dre-mir-181b-1 coding downstream 225327 45202223 ~ 45202331 (-)
XLOC_016810 gpsm2 coding upstream 42741 45491032 ~ 45510704 (-)
XLOC_016811 NA coding upstream 107889 45556180 ~ 45556664 (-)
XLOC_016812 CR450720.1 coding upstream 181416 45629707 ~ 45630823 (-)
XLOC_016813 prpf38b coding upstream 207003 45655294 ~ 45663945 (-)
XLOC_016814 fam102ba coding upstream 217202 45665493 ~ 45691128 (-)
XLOC_016800 CU929150.3 non-coding downstream 328154 45099174 ~ 45099504 (-)
XLOC_016799 NA non-coding downstream 329260 45095017 ~ 45098398 (-)
XLOC_016815 CU467828.1 non-coding upstream 296572 45744863 ~ 45744979 (-)
XLOC_016816 NA non-coding upstream 571070 46019361 ~ 46034111 (-)
XLOC_016817 NA non-coding upstream 1414744 46863035 ~ 46865562 (-)
XLOC_016819 NA non-coding upstream 1642454 47090745 ~ 47099661 (-)

Expression


Co-expression Network