XLOC_016814 (fam102ba)


Basic Information

Item Value
gene id XLOC_016814
gene name fam102ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 45665493 ~ 45691128 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032943
CACACACTCGCTCAAACGCAGACTCAACGAGTGCGGGGCTCTGTCTGCAAACCCTGTTCGAGGAGTACAACAGCAACTCTGTCATCCTTTGCATTTCCAATCAATGGCCTTCATCATGATGAAAAAGAAAAGGTTTAAGTTTAAAGTGGATGTGGAGCTGGAGGAGCTGTCATCTGTCCCATACGTGAACGGAGTTCTGTTCTGCAAGGTCCGACTGACGGACGGAGGCTTTTCAGAGGAGTCTTCGAGAGAGCCAGTTTTGGTGAATTGCGTTAAATGGAAGAAAAGATTCTCCTTTATATGTAAGATGAGTGCTAATGCCGGGACAGGGGTGCTGGATCCTTGTGTTTTTCGGGTATCTGTAAGAAAGGAGCTCAAAGGTGGGAAGACGTTTGCAAAGCTTGGTTTTGCTGATTTAAACTTGGCTGAGTTTGCTGGTTCAGGAAGCACCACGAGGCGCTGTCTATTGGAGGGATACAACACCAAAAACACACGTCAGGACAACTCTATACTGAAGgTGATAATCAGTATGCATCTAATGTCGGGTGATCCCTGCTTTAAAACGCCTCCATCCACTGCAATGACAATAGGATTTCCAGGAGACACAGAGACATGTCTGCATGAAGACAGAAGAGGAGAGACACCAAAAACAACCAATTACTTTACAGAAAACTTAGGAAAAAGTGGCTTTAGTCATGGTTCGGTTCCAGATGAACTGGGAAAGTGTGGCCACTCAAGAACCGCGAGCTACGCCAGCCAGCAGTCTAAGTTTTCAGGTTACAGCACAGGTCACTCACGCTCCTCCAGCCTGACAGAGCTCTCTCATCGGAGGAACTTGTCTGTGGGCAGTGCCTCCACCGGGATAGGTAGCCTTCAAGAGCCCAGTGAGAACAGAGAGTCCCGCACACCTTTACCACAGCATTTACCCACACCGTCACACAGTGCATTCTCAGCCGGCAGACATCCAGTAAAGCAGGACTCGGTGGAGTGTCAGTTAAAGCGAGTAGATGCTACCAGAGTGGACGCTGATGACATCATTGAAACAATCCTACAGGGTCAAGACTTCAGCCACAGCATTCTGGACTCCAGTAATGAAGaggagGGTCTGCGCCTGTTTGTTGGGCCAGGAGGCAGCACTGCACTGGGCTCTCAGCACAGCAGGTGAGATTGATTATGTAACATCCCTGCCGCAAGGTCAACACATCAACTGGCATCCCCTGCTCACGATGTCCTTGTGTTTGCTCATTGTGTTTTGCATTATGATAAGCCAATTATTGAGAGGGTTGGTGCTGGAGCTTTTGAACAGGTGGTTATAAAACGCTAGACTGAGCGTCCATGGGGGAAGGTGATGTAATATCTTGTGTCAAAAGAGGGGACGGCAGTCATCTTCCATCCCAAGCAGCACTTCTATACTGGGCTACTGACACATGCGTGGGCTCTAGGGATTGTGGGATTCCTGCTCCCCCTACTGGTCATCTCTGGAAACAGACAGAAGCTTTTTTTCTGTACCTAACAGTTACAGAAAATGCTTGGATTGGAAGCTTTTTACCAAAAATAGATGTTTATAGTTCTCGGAAAGagatttaaagggattgttcacacaCAAAatagattctgtcatcatttatttaccatCTACTAGTTCCAAACCTGtattttgaacaaaaaagaagatttttcgaagaatgttggaaactggcaacccattgacttccatggtatttcttttttcttttttttttatctgacaaAAGTTAAGTGAATACACTTTATTCGTCAAtgatttttaaagtttaaaaaacaaaactaatttacaTTGTGGTATCCTTTTATATATTGGcttccagtttccaacattcttcacaatatcttcttttacaaataaaatgtttgaaaccacttgagggtgagtaaattcaaATAAATCTGGGGGTGAACAATCATTTTAATGCTGGCAGAACTGAAAAGACGTTTTCCTCTTTATGTTTTCTTGTTGACTTGGACTTTCATCTGTCCAGTGTTGCTTTTAACAGATGCTGCTAA
>TCONS_00032944
CACAGTTGTCAGCTCTTCTCCGTTCACTCAGCGCCGTTTAAAAAACTCCAGTTTCTCACACACTCGCTCAAACGCAGACTCAACGAGTGCGGGGCTCTGTCTGCAAACCCTGTTCGAGGAGTACAACAGCAACTCTGTCATCCTTTGCATTTCCAATCAATGGCCTTCATCATGATGAAAAAGAAAAGGTTTAAGTTTAAAGTGGATGTGGAGCTGGAGGAGCTGTCATCTGTCCCATACGTGAACGGAGTTCTGTTCTGCAAGGTCCGACTGACGGACGGAGGCTTTTCAGAGGAGTCTTCGAGAGAGCCAGTTTTGGTGAATTGCGTTAAATGGAAGAAAAGATTCTCCTTTATATGTAAGATGAGTGCTAATGCCGGGACAGGGGTGCTGGATCCTTGTGTTTTTCGGGTATCTGTAAGAAAGGAGCTCAAAGGTGGGAAGACGTTTGCAAAGCTTGGTTTTGCTGATTTAAACTTGGCTGAGTTTGCTGGTTCAGGAAGCACCACGAGGCGCTGTCTATTGGAGGGATACAACACCAAAAACACACGTCAGGACAACTCTATACTGAAGgTGATAATCAGTATGCATCTAATGTCGGGTGATCCCTGCTTTAAAACGCCTCCATCCACTGCAATGACAATAGGATTTCCAGGAGACACAGAGACATGTCTGCATGAAGACAGAAGAGGAGAGACACCAAAAACAACCAATTACTTTACAGAAAACTTAGGAAAAAGTGGCTTTAGTCATGGTTCGGTTCCAGATGAACTGGGAAAGTGTGGCCACTCAAGAACCGCGAGCTACGCCAGCCAGCAGTCTAAGTTTTCAGGTTACAGCACAGGTCACTCACGCTCCTCCAGCCTGACAGAGCTCTCTCATCGGAGGAACTTGTCTGTGGGCAGTGCCTCCACCGGGATAGGTAGCCTTCAAGAGCCCAGTGAGAACAGAGAGTCCCGCACACCTTTACCACAGCATTTACCCACACCGTCACACAGTGCATTCTCAGCCGGCAGACATCCAGTAAAGCAGGACTCGGTGGAGTGTCAGTTAAAGCGAGTAGATGCTACCAGAGTGGACGCTGATGACATCATTGAAACAATCCTACAGGGTCAAGACTTCAGCCACAGCATTCTGGACTCCAGTAATGAAGaggagGGTCTGCGCCTGTTTGTTGGGCCAGGAGGCAGCACTGCACTGGGCTCTCAGCACAGCAGGGTTGGTGCTGGAGCTTTTGAACAGGTGGTTATAAAACGCTAGACTGAGCGTCCATGGGGGAAGGTGATGTAATATCTTGTGTCAAAAGAGGGGACGGCAGTCATCTTC

Function

symbol description
fam102ba Orthologous to human FAM102B (family with sequence similarity 102 member B).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060616-312 Orthologous to human FAM102B (family with sequence similarity 102 member B).

Ensembl:

ensembl_id ENSDARG00000053104

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032943 False 2043 nonsense_mediated_decay 0.44 11 45665493 45691072
TCONS_00032944 True 1326 mRNA 0.49 11 45666146 45691128

Neighbor

gene id symbol gene type direction distance location
XLOC_016813 prpf38b coding downstream 1548 45655294 ~ 45663945 (-)
XLOC_016812 CR450720.1 coding downstream 34670 45629707 ~ 45630823 (-)
XLOC_016811 NA coding downstream 108829 45556180 ~ 45556664 (-)
XLOC_016810 gpsm2 coding downstream 154789 45491032 ~ 45510704 (-)
XLOC_016809 NA coding downstream 217202 45427658 ~ 45448291 (-)
XLOC_016815 CU467828.1 coding upstream 53735 45744863 ~ 45744979 (-)
XLOC_016816 NA coding upstream 328233 46019361 ~ 46034111 (-)
XLOC_016817 NA coding upstream 1171907 46863035 ~ 46865562 (-)
XLOC_016818 si:ch211-226f6.1 coding upstream 1347275 47038403 ~ 47039762 (-)
XLOC_016819 NA coding upstream 1399617 47090745 ~ 47099661 (-)
XLOC_016808 NA non-coding downstream 250194 45413601 ~ 45415299 (-)
XLOC_016805 NA non-coding downstream 438248 45225122 ~ 45227245 (-)
XLOC_016804 dre-mir-181b-1 non-coding downstream 463162 45202223 ~ 45202331 (-)
XLOC_016820 FP101908.1 non-coding upstream 1569509 47260637 ~ 47260753 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000152_02440117_02451100 NA coding CI01000152 null 2440117 ~ 2451822 (-)