XLOC_016907


Basic Information

Item Value
gene id XLOC_016907
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 51473913 ~ 51477055 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033964
aactgTACAGTTACTttgtttctgaatgctacctCCTGATACCtccttgataattacaggcaggtgtgtttgatatgggttgcaactgaaatctgcaggaaggtggctctccaggagcagggttggtcACGCCTGCTTTACACGATGTTGAATTGTAGTCCATTAGTAGGTTTATTGATATTACtattgttttactgttgtttatgtttgttttatttgcttaaaatGCAGATCTACACTACACCAGAAGATCCTGTGATATACAGCTCTATAAATGATGAAACTCCAAATGATGTCAACAGTGAGATAACCTACAGTACCATTGACAACATTCCAGGGAGTGTAGCACCTCTAACAGGGGGAGGCCTCTACAGCACTGTGGCTCCACACTGACAAAAACACACCACAGACTCCTCTAACCAACAGCAGAGGACTGTCAtcccctttaaagggcacctattgtacccctttttcaagatttaagataagtcttttgtgtcgtCAGAATGTGTCTGAAAAGTTTTTGCTCAAAACACCCATAAGATATCTTTCAGTAGTTTGCAGTTTTCAAATCTGAGCATCTTGtagctttttttttgtctaagcctttaatgctagttctccctgcccacggTTCCCaagtgcctgtcagagtgtgcctcaatctccaccttggctgcgtcagataaacagcacagtgacagacatgaaggaagcagatctcacataacgtttgtgGGAAATATTACAGTAAGCATtgtcccaatgattatttgatgtatttgttgtggagttgcaacaatgagtcacgCTTAaacccctgatgtattgtcaaaagcccctgatctttagGAATATGTTGcgcttaagaaaaaaaaaggttgtataacatttattttgttttttaagtactTAAAATCACCACATACTGTACATCACACGCATTCCACTTAACGCAGCTTTTATGTTGGATGaatagtcagctgttcagcagtacctgtttctaaaAGCAAGTGGGAGTGAGACTGTTGTCACATGGcaggtgttaaaaaaaatcacaccacTGCACAGTCATCATACATCCATTATTTTGAcgagctgaagctgatgaggtaataatacaactgtttcaCAAAACTGAATAGATCaaactactgatgaagcttattatttgttttcacagtataaaatgtgtgtagttttggtgaaattaaataactgcaataaataaaatgtgcatcatattaATGTAAATCCATGCAAATTGTTCAGAAAAAAATGTggttacactttataataactacacactatgaatcatttactaagcattagcatctagtgagtTCATTATCTGTAa
>TCONS_00033417
tcTAAATACTATAAACTTGCCCATGTTTTGAACTCTAATATAGTCATGTCCTTATTGCTCTGGTTATTTtcatttgtcttttttcatttgtcTTCACAGAAAGAAAACAGGGAATCACATGAATAATACAACTGCATATGATGAAAAACAAAACGGTATTGAACTCCTGACTGTGTGGTTTCCAGTTTCTGCAGCTCTCCTGCTGTTGGTTCTGTTGTTGGCTGCTGTTGTTATCTGGATTAGAAGACGGAAACCAAAGCAAGATGACCAGACAATCAGACAGAGAAACAACAGCAGCACCACCAACCCAATCTACACTACACCAGAAGATCCTGTGATATACAGCTCTATAAATGATGAAACTCCAAATGATGTCAACAGTGAGATAACCTACAGTACCATTGACAACATTCCAGGGAGTGTAGCACCTCTAACAGGGGGAGGCCTCTACAGCACTGTGGCTCCACACTGACAAAAACACACCACAGACTCCTCTAACCAACAGCAGAGGACTGTCAtcccctttaaagggcacctattgtacccctttttcaagatttaagataagtcttttgtgtcgtCAGAATGTGTCTGAAAAGTTTTTGCTCAAAACACCCATAAGATATCTTTCAGTAGTTTGCAGTTTTCAAATCTGAGCATCTTGtagctttttttttgtctaagcctttaatgctagttctccctgcccacggTTCCCaagtgcctgtcagagtgtgcctcaatctccaccttggctgcgtcagataaacagcacagtgacagacatgaaggaagcagatctcacataacgtttgtgGGAAATATTACAGTAAGCATtgtcccaatgattatttgatgtatttgttgtggagttgcaacaatgagtcacgCTTAaacccctgatgtattgtcaaaagcccctgatctttagGAATATGTTGcgcttaagaaaaaaaaaggttgtataacatttattttgttttttaagtactTAAAATCACCACATACTGTACATCACACGCATTCCACTTAACGCAGCTTTTATGTTGGATGaatagtcagctgttcagcagtacctgtttctaaaAGCAAGTGGGAGTGAGACTGTTGTCACATGGcaggtgttaaaaaaaatcacaccacTGCACAGTCATCATACATCCATTATTTTGAcgagctgaagctgatgaggtaataatacaactgtttcaCAAAACTGAATAGATCaaactactgatgaagcttattatttgttttcacagtataaaatgtgtgtagttttggtgaaattaaataactgcaataaataaaatgtgcatcatattaATGTAAATCCATGCAAATTGTTCAGAAAAAAATGTggttacactttataataactacacactatgaatcatttactaagcattagcatctagtgagtTCATTATCTG

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033964 False 1357 lncRNA 0.38 3 51473913 51475418
TCONS_00033417 True 1433 lncRNA 0.38 6 51473916 51477055

Neighbor

gene id symbol gene type direction distance location
XLOC_016906 si:dkeyp-104b3.1 coding downstream 5157 51461380 ~ 51468756 (-)
XLOC_016905 BX677667.3 coding downstream 15685 51458113 ~ 51458228 (-)
XLOC_016904 si:dkeyp-104b3.2 coding downstream 19045 51451103 ~ 51454868 (-)
XLOC_016903 BX677667.1 coding downstream 44423 51429173 ~ 51429490 (-)
XLOC_016902 BX677667.2 coding downstream 58102 51415503 ~ 51415811 (-)
XLOC_016908 LO018493.2 coding upstream 145 51477200 ~ 51480324 (-)
XLOC_016909 NA coding upstream 6492 51483547 ~ 51484324 (-)
XLOC_016910 pigrl2.3 coding upstream 16460 51493515 ~ 51507540 (-)
XLOC_016911 pigrl3.5 coding upstream 22845 51499900 ~ 51500957 (-)
XLOC_016912 pigrl2.3 coding upstream 32608 51509663 ~ 51512294 (-)
XLOC_016901 NA non-coding downstream 63965 51409231 ~ 51409948 (-)
XLOC_016900 NA non-coding downstream 66605 51398587 ~ 51407308 (-)
XLOC_016923 BX908782.1 non-coding upstream 373102 51850157 ~ 51850271 (-)
XLOC_016925 NA non-coding upstream 623935 52100990 ~ 52103610 (-)
XLOC_016926 NA non-coding upstream 725064 52202119 ~ 52204072 (-)
XLOC_016929 NA non-coding upstream 988480 52465535 ~ 52468939 (-)

Expression


Co-expression Network