XLOC_016921 (ly97.2)


Basic Information

Item Value
gene id XLOC_016921
gene name ly97.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 51774062 ~ 51777238 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033079
ATGATGAAGGTTCTGCTGTTGGCTCTTGTTCTCGCTCTTGTGTTTGCTGATGGCTCTGCCCTGAAATGCTACAACTGCGTCCCGAATGTCCCCGGAGGATCCTGTGTGACCAAAGAGGAGACGTGTGGATATAAGAAAGACACTTGTGTGTCTGCCAGATTCACCAGTCCTCCCTTTGGCTACTTCCGGAGGTGCATTAGCATGGCGGATTGCATGATTCTTCAGTCCAGTACCTCGATTAAGGCCAAGTGCTGTCAGACTGACCTGTGCAATACAcccatcatttaa

Function

symbol description
ly97.2 Enables lipopolysaccharide binding activity. Acts upstream of or within defense response to Gram-negative bacterium and response to lipopolysaccharide. Is expressed in brain; endoderm; liver; pancreas; and yolk syncytial layer.

GO:

id name namespace
GO:0032496 response to lipopolysaccharide biological_process
GO:0050829 defense response to Gram-negative bacterium biological_process
GO:0001530 lipopolysaccharide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-170621-2 Enables lipopolysaccharide binding activity. Acts upstream of or within defense response to Gram-negative bacterium and response to lipopolysaccharide. Is expressed in brain; endoderm; liver; pancreas; and yolk syncytial layer.

Ensembl:

ensembl_id ENSDARG00000100184

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033079 True 288 mRNA 0.50 3 51774062 51777238

Neighbor

gene id symbol gene type direction distance location
XLOC_016920 BX908782.2 coding downstream 1624 51765179 ~ 51772438 (-)
XLOC_016919 si:ch211-9d9.1 coding downstream 16734 51737097 ~ 51757328 (-)
XLOC_016918 tgm1l1 coding downstream 54623 51665527 ~ 51719439 (-)
XLOC_016917 dad1 coding downstream 130018 51640591 ~ 51644044 (-)
XLOC_016916 pigr coding downstream 139631 51613453 ~ 51634431 (-)
XLOC_016922 ly97.3 coding upstream 13256 51790494 ~ 51794472 (-)
XLOC_016923 BX908782.1 coding upstream 72919 51850157 ~ 51850271 (-)
XLOC_016924 scn12aa coding upstream 110795 51888033 ~ 52020049 (-)
XLOC_016925 NA coding upstream 323752 52100990 ~ 52103610 (-)
XLOC_016926 NA coding upstream 424881 52202119 ~ 52204072 (-)
XLOC_016909 NA non-coding downstream 289738 51483547 ~ 51484324 (-)
XLOC_016907 NA non-coding downstream 297007 51473913 ~ 51477055 (-)
XLOC_016905 BX677667.3 non-coding downstream 315834 51458113 ~ 51458228 (-)
XLOC_016903 BX677667.1 non-coding downstream 344572 51429173 ~ 51429490 (-)
XLOC_016902 BX677667.2 non-coding downstream 358251 51415503 ~ 51415811 (-)
XLOC_016929 NA non-coding upstream 688297 52465535 ~ 52468939 (-)
XLOC_016931 NA non-coding upstream 851014 52628252 ~ 52681788 (-)

Expression


Co-expression Network