XLOC_016925


Basic Information

Item Value
gene id XLOC_016925
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 52100990 ~ 52103610 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033966
ATTTATGAGTCAACAAAgGCAACAGCTTCAGCTAAAATCATCTTCAAAGTCCTACTGGAGAAAAAAATACATCTTGATGATCTGaagttgaataaatgaacaactaaTCGTTATTTTTTTGGAGGTGAACTTTCCAATTAAGACATTGTTTTTCTGACACATTGATCAAAAGTGAGACTTTACTAAAGAATGTAATAAACATCCGCCAGTGAGATATGAAAAATTAAGATGAAAACCATACTGTTAAACATTCTCAACATTTGTAAGCAAAAACTCTTTCATTTTGatcaaatgaaaattctgtcatcgtttgcgcaactttgacttgttccaaacccgttTCTTGTTatattgaagatattttgaagaaagctgaagaaCTCTAATCATTCatttccatattatttgtttttcctacaatagatgtcaatggttacaggtttccagcattcttcaaaatatcttcttttgtgttcaactgaagaaagaatcACATAAAAGTTTGAACCCCCTTGCAggcgagtaaatagtgagtaaatgttaatgtTTTGGTAAATTATTccttaatgtaattttaattaccAAGATTTAAGAAACTTTAGACATTTATCAAAAGCTAAAATCACGTTTTGCAGTCTAAATGCAGGATTTCCATCATGTGCGACTAAATAAATCCCCAAAAATCTTTATAATTTCAAAGCTGTTCACCATATCATTCACTATACAGCAGGAGCTTGTGTTTCTTCACAGGAAAAATACTCATTACTTTAGCATTAACAGAAAAATATGCTAAATCTTTGGGTACTATCTTAAAGATTAtcttattaaaacattacaataacTCCAAAA
>TCONS_00033967
gtcTGTGTCATGAGCTACTGTGAAGCCTTTTATACTTGATGCATTTCTCATGGGACATTGCCAACTGTGCAGATGAATATCAAATAtcgcaaattagaaaaggttggtcagttaaattatgctactgaaagtaatgtttattcagcaataattctctAGTAGCAGAATTGTAGACAATTAACGTCAGAGCTAATCGATACTTTTATAATTTAGCACCAATAACGATAAAGTATTGAGTTTCGgtactcctggagggccgcagctctgcacagtttagttccaaccctaattgtCTCTGAAAGTATTGTTACAATTAACTTTATGACTCAACAAGAaacacagtttcagctaaaaaaaaaaaaaacaaacatcttcaCTGAAGAAAAAATACACCTTGATGATTTGaagttgaataaatgaacaacttaTCATTGTTTTTGGGggtaaactatccatttaagacATTGTTTTTCTCACACATTGATCAAAAGTGAGACTTTGCTAAAGAATGTAATAAACATCTGCAAGTAAGGTATGAAAAATTAAAGGGAAAACCGTGCCATATTGCTAAATATTCTTTATATTTTTAAGCAAAAACTCACTAATTTtaatcagaaaacaaaacaaaagagatagttcacccaaaaatgaatatacaGTCTTCATTTACATTAGCTCGACTTGCTCCACTTGTATGAGCTTCTTTCTTATTAtattgaagatattttgtagaaagctAACTCTTACTATccacttccatattatttgtttttcctactacagatgccaatggttacaggtttccagcattcttcaaaatatcttcttttgtgttcaacagaagaaagaatcacataaaagtttgaaaccccttgggggtgagtaaatattcatttttgggtgaattatccctttatgTAATATTCATTACCAAGATTTAAGAAACTTTAGACATTTATGGAAAACTAAAATCACAGTCTAAATGCAGGATTTCCATCAAGTGCGACTAGCTTTAAATTTATGAGTCAACAAAggccacagtttcagctaaaaaccaTCTTCAAAGTCCTACTGAAGAAAAAACATACATCTTGATGATCTGAagttgaataaattaacaatgaattattataatttgttttgtgGGGACTATTCATTTAAGACAGATTGATCAAATGTGAGACTTTACTAAAGAGTGGAATAAAATCCGCCAGTTAGGTATGAAAAACTAAAGGGAAAACCATGTCATACTGCTaaataatttgtacattttaagcAAAAACTCAATCATTTTAATCAGAAAACAAGGCTTAAtatcttaaaggaacagttcaccccacaaaatgaatattctgtcatttacATTAGCTTGACTTGCTCCACCTGTATGAGCTTCTTTCTTAATAcattgaagatattttgtagaaagctGGACAACTGTAAACAATCATTTCCATAGCATTTTTTTTCTACTACAGATGCCAATGGTTACAGtattccagcattcttcaaaatatcttcttttgtgtttaacagaagaaagaatcacGTACAATCTTGAAACCTGCTTCAggtgagtaaatattcattttgttGGCTAATTATCCCTTTATGTCATTTTCATTATAAAGATAAAAGAAAGTTTAGACATTTATGGAAAACTAAAATCAAGGTTTGCACTCTAAATGCAGGATTTCCATCACGTGCGACTAAATAAATCCCAAAAATCACCaaaacttctttttttaattctcaaaGCATTGTTAGCTTTAAATTATGAGTCAACAAAGGCAACAGCTTCAGCTAAAATCATCTTCAAAGTCCTACTGGAGAAAAAAATACATCTTGATGATCTGaagttgaataaatgaacaactaaTCGTTATTTTTTTGGAGGTGAACTTTCCAATTAAGACATTGTTTTTCTGACACATTGATCAAAAGTGAGACTTTACTAAAGAATGTAATAAACATCCGCCAGTGAGATATGAAAAATTAAGATGAAAACCATACTGTTAAACATTCTCAACATTTGTAAGCAAAAACTCTTTCATTTTGatcaaatgaaaattctgtcatcgtttgcgcaactttgacttgttccaaacccgttTCTTGTTatattgaagatattttgaagaaagctgaagaaCTCTAATCATTCatttccatattatttgtttttcctacaatagatgtcaatggttacaggtttccagcattcttcaaaatatcttcttttgtgttcaactgaagaaagaatcACATAAAAGTTTGAACCCCCTTGCAggcgagtaaatagtgagtaaatgttaatgtTTTGGTAAATTATTccttaatgtaattttaattaccAAGATTTAAGAAACTTTAGACATTTATCAAAAGCTAAAATCACGTTTTGCAGTCTAAATGCAGGATTTCCATCATGTGCGACTAAATAAATCCCCAAAAATCTTTATAATTTCAAAGCTGTTCACCATATCATTCACTATACAGCAGGAGCTTGTGTTTCTTCACAGGAAAAATACTCATTACTTTAGCATTAACAGAAAAATATGCTAAATCTTTGGGTACTATCTTAAAGATTAtcttattaaaacattacaataacTCCAAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033966 False 849 lncRNA 0.30 2 52100990 52102594
TCONS_00033967 True 2621 lncRNA 0.31 1 52100990 52103610

Neighbor

gene id symbol gene type direction distance location
XLOC_016924 scn12aa coding downstream 80941 51888033 ~ 52020049 (-)
XLOC_016923 BX908782.1 coding downstream 250719 51850157 ~ 51850271 (-)
XLOC_016922 ly97.3 coding downstream 306518 51790494 ~ 51794472 (-)
XLOC_016921 ly97.2 coding downstream 323752 51774062 ~ 51777238 (-)
XLOC_016920 BX908782.2 coding downstream 328552 51765179 ~ 51772438 (-)
XLOC_016926 NA coding upstream 98509 52202119 ~ 52204072 (-)
XLOC_016927 tle2c coding upstream 228412 52332022 ~ 52365251 (-)
XLOC_016928 chico coding upstream 302955 52406565 ~ 52455525 (-)
XLOC_016929 NA coding upstream 361925 52465535 ~ 52468939 (-)
XLOC_016930 gna11b coding upstream 366244 52469854 ~ 52550135 (-)
XLOC_016909 NA non-coding downstream 616666 51483547 ~ 51484324 (-)
XLOC_016907 NA non-coding downstream 623935 51473913 ~ 51477055 (-)
XLOC_016905 BX677667.3 non-coding downstream 642762 51458113 ~ 51458228 (-)
XLOC_016903 BX677667.1 non-coding downstream 671500 51429173 ~ 51429490 (-)
XLOC_016931 NA non-coding upstream 524642 52628252 ~ 52681788 (-)
XLOC_016934 NA non-coding upstream 824086 52927696 ~ 52929721 (-)
XLOC_016944 NA non-coding upstream 2049840 54153450 ~ 54155169 (-)

Expression


Co-expression Network